View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18984_high_4 (Length: 260)
Name: NF18984_high_4
Description: NF18984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18984_high_4 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 37119852 - 37120103
Alignment:
| Q |
9 |
gaaaagaacagccgaagaactgaccattccatgcaacccgaaaggagtgaagtcgttgaagttttcgggtttggctttgattagaccggcgattactatg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37119852 |
gaaaagaacagccgaagaactgaccattccatgcaacccgaaaggagtgaagtcattgaagttttcgggtttggctttgattagaccggcgattactatg |
37119951 |
T |
|
| Q |
109 |
aagataatgacagccatgtggaacattgtggctatgtagttgaagatggaagaacctttggtgctgtaaactgcaagggctgtgatggctactagggctc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37119952 |
aagataatgacagccatgtggaacattgtggctatgtagttgaagatggaagaacctttggtgctgtaaactgcaagagctgtgatggctactagggctc |
37120051 |
T |
|
| Q |
209 |
caatagcaatagggtcaagatggccataatcaggattcatattgtgaactat |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37120052 |
caatagcaatagggtcaagatggccataatcaggattcatattgtgaactat |
37120103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 9 - 260
Target Start/End: Original strand, 37111597 - 37111848
Alignment:
| Q |
9 |
gaaaagaacagccgaagaactgaccattccatgcaacccgaaaggagtgaagtcgttgaagttttcgggtttggctttgattagaccggcgattactatg |
108 |
Q |
| |
|
|||||| ||||| |||| | ||||||| || || | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37111597 |
gaaaagtacagcggaagcattgaccataccgtgaagcccgaaaggagtgaagtcattgaagttttcgggtttggctttgattagaccggcgataactatg |
37111696 |
T |
|
| Q |
109 |
aagataatgacagccatgtggaacattgtggctatgtagttgaagatggaagaacctttggtgctgtaaactgcaagggctgtgatggctactagggctc |
208 |
Q |
| |
|
|||||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37111697 |
aagataatgacagccatgtgtaagagtgtggctatgtagttgaagatggaagagcctttggtgctgtaaactgcaagggctgtgatggctactagagctg |
37111796 |
T |
|
| Q |
209 |
caatagcaatagggtcaagatggccataatcaggattcatattgtgaactat |
260 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
37111797 |
caatagcaatagggtcaagatggccatagtcagggttcatattgtgaactat |
37111848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 37136218 - 37136156
Alignment:
| Q |
192 |
gatggctactagggctccaatagcaatagggtcaagatggccataatcaggattcatattgtg |
254 |
Q |
| |
|
|||||||| |||||| || |||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
37136218 |
gatggctatgagggctataacagcaatagggtcaagatgaccataatcagggttcatattgtg |
37136156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University