View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18984_low_3 (Length: 337)
Name: NF18984_low_3
Description: NF18984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18984_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 30900011 - 30900331
Alignment:
| Q |
17 |
agtaacatgcgttgcatttgatataaatacacatttaacatctcattttaactatatctcattttaacactctctttttctctttctctcgaggtgtaca |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30900011 |
agtaacatgcgttgcacttgatataaatacacatttaacatctcattttaactatatctcattttaacactctctttttctctttctctcgaggtgtaca |
30900110 |
T |
|
| Q |
117 |
catcc--atatataacattttccataaatttatcattggaagaaaattattctggtgggacaatatgtattatatataatgtctacaaagaattatgaat |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30900111 |
catccatatatataacattttccataaatttatcattggaagaaaattattctggtgggacaatatgtattatatataaagtctacaaagaattatgaat |
30900210 |
T |
|
| Q |
215 |
cgg-agtaactttatagaaatttattttcggagcaagtttatcatcacccatatatatcatttcatctctaattcaatttttccctctatatataatcaa |
313 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30900211 |
cggaagtaactctatagaaatttattttcggagcaagtttatcgtcacccatatatatcatttcatctctaattcaatttttccctctatatataatcaa |
30900310 |
T |
|
| Q |
314 |
tctcctcacttagtggaataa |
334 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
30900311 |
tctcctcacttagtgggataa |
30900331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University