View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18984_low_7 (Length: 203)

Name: NF18984_low_7
Description: NF18984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18984_low_7
NF18984_low_7
[»] chr4 (24 HSPs)
chr4 (9-203)||(1548453-1548647)
chr4 (29-202)||(1552797-1552973)
chr4 (126-203)||(1524515-1524592)
chr4 (128-203)||(558493-558568)
chr4 (117-203)||(546897-546983)
chr4 (117-203)||(8187120-8187206)
chr4 (129-203)||(55908757-55908831)
chr4 (126-202)||(1508033-1508109)
chr4 (126-202)||(1513437-1513513)
chr4 (81-199)||(3438599-3438716)
chr4 (126-203)||(553472-553549)
chr4 (126-202)||(12121487-12121563)
chr4 (128-203)||(8184059-8184134)
chr4 (117-203)||(640899-640985)
chr4 (28-177)||(566084-566233)
chr4 (159-203)||(12116604-12116648)
chr4 (119-203)||(55505137-55505221)
chr4 (130-203)||(532186-532259)
chr4 (148-203)||(659726-659779)
chr4 (147-203)||(1519171-1519227)
chr4 (126-202)||(1537797-1537873)
chr4 (117-203)||(570335-570421)
chr4 (117-199)||(7307844-7307926)
chr4 (64-158)||(53761844-53761937)
[»] chr8 (7 HSPs)
chr8 (29-203)||(27922404-27922578)
chr8 (126-203)||(18315302-18315379)
chr8 (126-203)||(32151294-32151371)
chr8 (126-203)||(34936192-34936269)
chr8 (81-203)||(17628043-17628165)
chr8 (128-168)||(44736530-44736570)
chr8 (121-203)||(17636430-17636512)
[»] chr5 (6 HSPs)
chr5 (39-199)||(32267381-32267541)
chr5 (126-203)||(37937880-37937957)
chr5 (26-203)||(41901564-41901741)
chr5 (128-203)||(38267585-38267660)
chr5 (81-203)||(41889583-41889705)
chr5 (126-203)||(20478111-20478188)
[»] chr3 (4 HSPs)
chr3 (16-195)||(51113818-51113997)
chr3 (121-203)||(51120922-51121004)
chr3 (81-203)||(13470761-13470883)
chr3 (81-177)||(51764495-51764591)
[»] chr6 (20 HSPs)
chr6 (81-199)||(6585270-6585388)
chr6 (37-203)||(6394768-6394934)
chr6 (128-202)||(6402855-6402929)
chr6 (126-203)||(6432154-6432231)
chr6 (139-203)||(28935055-28935119)
chr6 (128-203)||(6603231-6603306)
chr6 (37-203)||(14818287-14818452)
chr6 (126-203)||(6409999-6410076)
chr6 (128-203)||(7119152-7119227)
chr6 (128-203)||(7131630-7131705)
chr6 (117-203)||(9411339-9411425)
chr6 (128-202)||(14802331-14802405)
chr6 (126-203)||(6415959-6416036)
chr6 (126-203)||(6423210-6423287)
chr6 (81-158)||(19632387-19632464)
chr6 (39-203)||(7994211-7994375)
chr6 (128-203)||(10579765-10579840)
chr6 (37-203)||(14820597-14820763)
chr6 (126-203)||(11936304-11936381)
chr6 (126-203)||(11948284-11948361)
[»] chr2 (3 HSPs)
chr2 (126-203)||(45245114-45245191)
chr2 (129-203)||(1037693-1037767)
chr2 (128-203)||(32785801-32785876)
[»] chr1 (6 HSPs)
chr1 (38-199)||(7554393-7554554)
chr1 (134-203)||(52082582-52082651)
chr1 (126-203)||(9586632-9586709)
chr1 (47-203)||(19468528-19468684)
chr1 (117-200)||(43634891-43634974)
chr1 (81-199)||(29718956-29719074)
[»] scaffold0295 (1 HSPs)
scaffold0295 (132-203)||(653-724)
[»] scaffold0041 (1 HSPs)
scaffold0041 (125-203)||(39176-39254)
[»] scaffold0014 (1 HSPs)
scaffold0014 (116-172)||(88822-88878)
[»] chr7 (2 HSPs)
chr7 (126-203)||(10614586-10614663)
chr7 (126-203)||(15092180-15092257)
[»] scaffold0807 (1 HSPs)
scaffold0807 (140-176)||(1523-1559)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 8e-97; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 1548647 - 1548453
Alignment:
Q  9 acatcatcatgcaattgaaaacaaccttccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttac 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  1548647 acatcatcatgcaattgaaaacaaccttccaaattaatttctctcagttgcgagcagttttcttctatatgtttcactcccttctctgtgatatttttac 1548548  T
Q  109 aacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548547 aacgtttttgtaacaagtgcaaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 1548453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 29 - 202
Target Start/End: Complemental strand, 1552973 - 1552797
Alignment:
Q  29 acaaccttccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttt---tacaacgttttagtaacaag 125  Q
    |||||||| |||||| || ||||| |||||| || | |||||| | | ||| |||||||||||||| |||| ||  |   ||||  ||| ||||||||      
T  1552973 acaacctttcaaattgatctctcttagttgcaagcaattttctccgacatgcttcactcccttctcggtgacataataattacattgttctagtaacagc 1552874  T
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacac 202  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||| |||| ||||||||||||| ||||||||    
T  1552873 tgcaaaagcccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacac 1552797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 1524592 - 1524515
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||| ||||||| |||||||||    
T  1524592 tgcaaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacc 1524515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 558493 - 558568
Alignment:
Q  128 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||  |||   ||||||||||||||||    
T  558493 caaaagcccacgacaactctttgagatcacatggagtgcttcatcatcaatatatgttaatgacaagttcaacacc 558568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 546897 - 546983
Alignment:
Q  117 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||| | ||||||||||| |||||||||||||||||||| ||||||||||||||  | | ||||| |||||||||||| ||||    
T  546897 agtaacaattccaaaagcccacaacaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacc 546983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 8187206 - 8187120
Alignment:
Q  117 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||| ||||||||||||| |||||||||||| ||  |||  ||||||| ||||||||  ||||||||||||||||||||||||    
T  8187206 agtaacaactgcaaaagcccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacc 8187120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 55908831 - 55908757
Alignment:
Q  129 aaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||||| |||| |||||||||||| || ||||||||||||||||| || ||||||||||||||| ||||||    
T  55908831 aaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacc 55908757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 1508109 - 1508033
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacac 202  Q
    ||||||||||||||||||| ||||||||| |||   |||||||||||||||| | | ||||||||||||||||||||    
T  1508109 tgcaaaagcccacgacaacactttgagattacacacagtgtttcatcatcaacattggtatgtgacaagttcaacac 1508033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 1513513 - 1513437
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacac 202  Q
    ||||||||||||||||||| ||||||||| || | ||||||||||||||||| | |||||  |||||||||||||||    
T  1513513 tgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacac 1513437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 3438716 - 3438599
Alignment:
Q  81 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 180  Q
    |||||||||||| |||||| |  |||||||  ||  |||||||  ||||||||||||| ||||||||||||||| |||| |||| ||| ||||||||  |    
T  3438716 ttcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtattt-atcatcaactc 3438618  T
Q  181 ttgtatgtgacaagttcaa 199  Q
    |||||||||||||| ||||    
T  3438617 ttgtatgtgacaagctcaa 3438599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 553472 - 553549
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||||||||||  |||||||||||| |||||||| |||| |||||||||||  ||||||  ||||||||||||||||    
T  553472 tgcaaaagcccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacc 553549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 12121563 - 12121487
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacac 202  Q
    |||||||||||||| |||| ||||||||| ||   ||||||||||||||||| | |||||| |||||||||||||||    
T  12121563 tgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacac 12121487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 8184134 - 8184059
Alignment:
Q  128 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||||||||| |||||||||||||||  ||| ||||| |  ||||||||  ||||||||||||||||||||||||    
T  8184134 caaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacc 8184059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 640899 - 640985
Alignment:
Q  117 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||  |||||||| ||||| ||| |||||||| |||| | |||||||||||||||||   |||||| ||||||||||||||||    
T  640899 agtaacagatgcaaaagaccacggcaattctttgaggtcacgtagagtgtttcatcatcaacgtttgtatctgacaagttcaacacc 640985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 566084 - 566233
Alignment:
Q  28 aacaaccttccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtg 127  Q
    ||||||| ||||| || |||||||||||||| | | |||||||  | |  || ||||||||||||||||| | ||||| |  |  ||  ||| |||  ||    
T  566084 aacaaccctccaacttgatttctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgtaacattttgattatattgcagtgacagctg 566183  T
Q  128 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaa 177  Q
    |||||||||||||||   |||||||||||||| |||||||||||||||||    
T  566184 caaaagcccacgacagtactttgagatcacatagagtgtttcatcatcaa 566233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 12116648 - 12116604
Alignment:
Q  159 ttgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  12116648 ttgagtgattcatcatcaacacttgtatgtgacaagttcaacacc 12116604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 55505221 - 55505137
Alignment:
Q  119 taacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||| |||||||| ||||||||| |||||||| ||||||  |||||| |||| ||||   |||||| ||||||||||||||||    
T  55505221 taacaaatgcaaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacc 55505137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 532186 - 532259
Alignment:
Q  130 aaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||| |||||||| |||||||| ||||||  ||  |||||||||||||  |||||| ||||||||||||||||    
T  532186 aaagctcacgacaattctttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacc 532259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 659726 - 659779
Alignment:
Q  148 ttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||||||||||  |||||||||| || || |||||||||||||||||||||||||    
T  659726 ttgagatcacat--agtgtttcattattaacacttgtatgtgacaagttcaacacc 659779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 1519227 - 1519171
Alignment:
Q  147 tttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||||||||||| ||||| ||  |||||||  ||||||||||||||||||||||||    
T  1519227 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacc 1519171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 1537873 - 1537797
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacac 202  Q
    ||||||||||||||||||| ||||||||| |||   |||||||  |||| || | |||||| |||||||||||||||    
T  1537873 tgcaaaagcccacgacaacactttgagattacacacagtgttttgtcattaacatttgtatatgacaagttcaacac 1537797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 570335 - 570421
Alignment:
Q  117 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||  ||||||||||| |||||||||||||| |||| || ||||  ||| | |||||  | ||||| ||||||||||||||||    
T  570335 agtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacc 570421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 7307844 - 7307926
Alignment:
Q  117 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaa 199  Q
    ||||||| ||||||||||| || ||||||||||||||||| |   |||| |||||||||||    ||||| ||||||||||||    
T  7307844 agtaacaggtgcaaaagcctacaacaactctttgagatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaa 7307926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 158
Target Start/End: Complemental strand, 53761937 - 53761844
Alignment:
Q  64 agttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcaca 158  Q
    |||||||||| | ||| ||||||||||| || |||| ||| | |||| |||| ||||| |  |||||||||||||||||| |||| |||||||||    
T  53761937 agttttcttccacatgtttcactcccttgtccgtgacattatcacaatgtttcagtaatat-tgcaaaagcccacgacaattcttcgagatcaca 53761844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 3e-25; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 27922404 - 27922578
Alignment:
Q  29 acaaccttccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgc 128  Q
    |||||| |||||| |||| | ||||||||| | | |||||||| | | ||||||||||||||||| ||||| ||  ||||||  ||  ||| |||| | |    
T  27922404 acaaccatccaaactaatctttctcagttgagtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttc 27922503  T
Q  129 aaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||||| ||||||||||||||||| ||  |||| ||||||||||| | |||||| ||||||||||||||||    
T  27922504 aaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacc 27922578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 18315379 - 18315302
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||||||||||   |||||||||||||||||||||||    
T  18315379 tgcaaaagcctacgacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacc 18315302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 32151294 - 32151371
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||  ||||||  ||||||||| ||||||    
T  32151294 tgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacc 32151371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 34936269 - 34936192
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||||||||||||||||||||||| |||  ||| |||||||| ||||||||  ||||||| |||||||| |||||||    
T  34936269 tgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacc 34936192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 17628165 - 17628043
Alignment:
Q  81 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 180  Q
    ||||||||||| ||||||| |  |||||||  || |||||| |  | ||| ||||||  |||| ||||||||||||||  ||||| || ||||||||  |    
T  17628165 ttcactcccttgtctgtgacacctttacaaaattctagtaatagtttcaagagcccaaaacaattctttgagatcacacggagtgctttatcatcaactc 17628066  T
Q  181 ttgtatgtgacaagttcaacacc 203  Q
    | |||||||||||||||||||||    
T  17628065 tagtatgtgacaagttcaacacc 17628043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 44736530 - 44736570
Alignment:
Q  128 caaaagcccacgacaactctttgagatcacattgagtgttt 168  Q
    ||||||||||| ||||||||||||||||||| |||||||||    
T  44736530 caaaagcccacaacaactctttgagatcacaatgagtgttt 44736570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 17636512 - 17636430
Alignment:
Q  121 acaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||| |||||||| | | |||||||||||||||||||||  | || |||||| ||||  | ||| ||||||||||||||||||    
T  17636512 acaattgcaaaagtctaagacaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacc 17636430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 39 - 199
Target Start/End: Original strand, 32267381 - 32267541
Alignment:
Q  39 aaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccac 138  Q
    |||||||| | ||| ||||||| | |||||||| ||| ||| ||||||||||||| ||||||||  ||||||  ||| ||| |||| | |||||||||||    
T  32267381 aaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatttcaaaagcccac 32267480  T
Q  139 gacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaa 199  Q
     ||||||||||||||||| ||  |||| |||||||||||   |||| ||||||||||||||    
T  32267481 aacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaa 32267541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 37937880 - 37937957
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||||||||||||  |||||||||| |||| |||||||| ||||||||| |||||||||| ||||| |||||||    
T  37937880 tgcaaaagcccacgacacatctttgagattacatagagtgtttgatcatcaattcttgtatgtgtcaagtccaacacc 37937957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 41901741 - 41901564
Alignment:
Q  26 aaaacaaccttccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaag 125  Q
    ||||||||| | |||| |||| | ||||| |||||   |||||||| | | ||| ||||||||||||| ||||| ||  ||||||  ||  ||| ||||     
T  41901741 aaaacaaccattcaaactaatctttctcaattgcgtacagttttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaat 41901642  T
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    | |||||| |||| ||||||||||||||||| ||  |||| |||||||||||   |||||| ||||||||||||||||    
T  41901641 ttcaaaagtccacaacaactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacc 41901564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 38267660 - 38267585
Alignment:
Q  128 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||||||| ||  |||||||||| |||| |||||| ||||||||||  |||||||||| ||||| |||||||    
T  38267660 caaaagcccacggcacgtctttgagattacatagagtgtgtcatcatcaactcttgtatgtgtcaagtccaacacc 38267585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 41889705 - 41889583
Alignment:
Q  81 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 180  Q
    ||||||||||||| ||||| ||  | ||||  ||| |||||||| | | ||||||| | ||||||||||||||||  ||  ||||||||||||||||       
T  41889705 ttcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaagtgtttcatcatcaactt 41889606  T
Q  181 ttgtatgtgacaagttcaacacc 203  Q
    |||||| ||| ||||||||||||    
T  41889605 ttgtatatgataagttcaacacc 41889583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 20478188 - 20478111
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||||||||||| |||| || |||||||||||   | |||||| ||||||| | |||||| ||||||||||||||||    
T  20478188 tgcaaaagcccacaacaattccttgagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacc 20478111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 51113997 - 51113818
Alignment:
Q  16 catgcaattgaaaacaaccttccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttt 115  Q
    |||||| || ||||||||| |  |||||||| ||||| ||||  | | | |||||| | | ||| ||||||||||||||||||| ||  | ||||  |||    
T  51113997 catgcactttaaaacaaccctttaaattaatctctcttagttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaattttt 51113898  T
Q  116 tagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagt 195  Q
     |||||||  ||||||||||||| ||||||||| |||||||||| |||||||||||||||||   |||||| ||||||||    
T  51113897 cagtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagt 51113818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 51121004 - 51120922
Alignment:
Q  121 acaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||| ||||||||||||||||||||||||||||| ||||  ||| ||||||||||||  |||||||| |||||||||||||||    
T  51121004 acaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacc 51120922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 13470883 - 13470761
Alignment:
Q  81 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 180  Q
    ||||||||||  ||||||| ||| | |||| |||  ||||| |  ||||||||||||| |||| |||||||||||| || |||||||| ||||| ||       
T  13470883 ttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatcatatagagtgttttatcattaacct 13470784  T
Q  181 ttgtatgtgacaagttcaacacc 203  Q
    |||||| ||||||||||||||||    
T  13470783 ttgtatttgacaagttcaacacc 13470761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 51764591 - 51764495
Alignment:
Q  81 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaa 177  Q
    ||||||||||||||  ||| ||| | |||| |||  ||||| |  ||||||||||| | |||| ||||||||||| ||| |||||||| ||||||||    
T  51764591 ttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatcgcatagagtgttttatcatcaa 51764495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 6585388 - 6585270
Alignment:
Q  81 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 180  Q
    |||| |||||||||||||| ||||| ||||| ||| ||||| |  | ||||||| ||  |||||||||||||||||||| |||||||||||||||||       
T  6585388 ttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgtttcatcatcaacct 6585289  T
Q  181 ttgtatgtgacaagttcaa 199  Q
    |||||| ||||||||||||    
T  6585288 ttgtatctgacaagttcaa 6585270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 203
Target Start/End: Original strand, 6394768 - 6394934
Alignment:
Q  37 ccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagccc 136  Q
    |||||||||| ||||||| ||| | | |||||||| | | ||| | ||| ||||| ||||||| ||||||||||   |  |||   || |||||||||||    
T  6394768 ccaaattaatctctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacatttttacaattatcaagttgtaattgcaaaagccc 6394867  T
Q  137 acgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    || |||| ||||||||||||||   || |||||||||||||  ||||||| ||||||||||||||||    
T  6394868 acaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacc 6394934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 6402855 - 6402929
Alignment:
Q  128 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacac 202  Q
    ||||||||||| |||| ||||||||||||||| |||||||||||||||||   | |||| |||||||||||||||    
T  6402855 caaaagcccactacaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacac 6402929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 6432154 - 6432231
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||| |||||||| |||| ||||| |||||||||  ||||||||||||||||  ||||||| ||||||||||||||||    
T  6432154 tgcagaagcccacaacaattctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacacc 6432231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 28935055 - 28935119
Alignment:
Q  139 gacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||||||||||| |||||| |||||| |||||| ||||  ||||||||||||||||||||||||    
T  28935055 gacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacc 28935119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 6603306 - 6603231
Alignment:
Q  128 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||||| ||||||||||||||||| ||| || |||||||||||||| || ||||| || ||||| |||||||    
T  6603306 caaaagcccaggacaactctttgagatcgcatagactgtttcatcatcaacacctgtatctgccaagtccaacacc 6603231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 203
Target Start/End: Original strand, 14818287 - 14818452
Alignment:
Q  37 ccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagccc 136  Q
    ||||||||||| ||||||| || | | |||||||| ||| ||| ||||| ||||||||||||| ||| ||||||  ||  ||||| ||  ||||||||||    
T  14818287 ccaaattaatt-ctctcagctgtgtgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagccc 14818385  T
Q  137 acgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |  |||| |||| ||||||| ||  |||||||||| |||||   |||||| ||| ||||||||||||    
T  14818386 agaacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacc 14818452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 6409999 - 6410076
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||||| || |||| |||||||||||||||  || |||||||||||||  ||||||| |||| |||||||||||    
T  6409999 tgcaaaagccgacaacaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacacc 6410076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 7119152 - 7119227
Alignment:
Q  128 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||||||| | |||| |||| |||||||||| |||||||||||||||||   | |||| ||||||||||||||||    
T  7119152 caaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacc 7119227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 7131630 - 7131705
Alignment:
Q  128 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||||||| | |||| |||| |||||||||| |||||||||||||||||   | |||| ||||||||||||||||    
T  7131630 caaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacc 7131705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 9411339 - 9411425
Alignment:
Q  117 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||  |||||||| ||||||||| ||||||||||| ||| |||| |||||||   || || ||||| ||||||||||||||||    
T  9411339 agtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacc 9411425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 14802331 - 14802405
Alignment:
Q  128 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacac 202  Q
    |||||| |||| |||| ||||||| ||||||| |||||||||||||||||   |||||| |||||| ||||||||    
T  14802331 caaaagaccacaacaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacac 14802405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 6415959 - 6416036
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||||||||| | |||| ||||||||||||||| ||| |||| ||||| ||   |||||| ||||||||||||||||    
T  6415959 tgcaaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacc 6416036  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 6423210 - 6423287
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||||| ||||| |||||||||||||||| ||| |||||||| |||   ||  ||||||| ||||||||||||||||    
T  6423210 tgcaaaatcccacaacaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacc 6423287  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 19632387 - 19632464
Alignment:
Q  81 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcaca 158  Q
    |||||||||||||||||||||||   ||||  ||| ||||| |  ||||||||||||| |||| ||||||||||||||    
T  19632387 ttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgagatcaca 19632464  T

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Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 203
Target Start/End: Complemental strand, 7994375 - 7994211
Alignment:
Q  39 aaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccac 138  Q
    |||| ||| ||| ||||||||| | |||||||| | | ||| |||||||||| ||| || | ||  |||||| |||  ||||| |  |||||||| |||     
T  7994375 aaataaatctctttcagttgcgtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccag 7994276  T
Q  139 gacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
     |||| |||||||||||||||  |||||||| |||| ||  ||||||| ||||| ||||||||||    
T  7994275 aacaattctttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacc 7994211  T

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Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 10579840 - 10579765
Alignment:
Q  128 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||| || |||| |||||||||||  || |||||||| ||||||||   |||||| ||||||||||||||||    
T  10579840 caaaagccgacaacaattctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacc 10579765  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 203
Target Start/End: Original strand, 14820597 - 14820763
Alignment:
Q  37 ccaaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagccc 136  Q
    |||||||||| |||||||| || | | |||||| | | | ||| ||||| ||||||||||||| ||  |||||   ||  ||||| ||  ||||||||||    
T  14820597 ccaaattaatctctctcagctgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagccc 14820696  T
Q  137 acgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    || |||| |||| ||||||| ||  |||||||||| |||||   |||||| ||| ||||||||||||    
T  14820697 acaacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacc 14820763  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 11936381 - 11936304
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||||||||||| ||||||||||||||||  || ||||| || ||| ||||  ||||||  |||||||| |||||||    
T  11936381 tgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacc 11936304  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 11948361 - 11948284
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||||||||||| ||||||||||||||||  || ||||| || ||| ||||  ||||||  |||||||| |||||||    
T  11948361 tgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacc 11948284  T

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Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 45245191 - 45245114
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||   |||| | |||||| |||||||||    
T  45245191 tgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacc 45245114  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 1037767 - 1037693
Alignment:
Q  129 aaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||||| |||| |||||||||||| || ||||||||||||||||| || ||||||||||||||| ||||||    
T  1037767 aaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacc 1037693  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 32785876 - 32785801
Alignment:
Q  128 caaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||||| || ||||  ||||||||||||  |||| |||||||||||| ||||||||||||||||||||||||    
T  32785876 caaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacc 32785801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 38 - 199
Target Start/End: Original strand, 7554393 - 7554554
Alignment:
Q  38 caaattaatttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagccca 137  Q
    ||||||||| ||| | ||| ||| | |||||||| | | ||| ||||||||||| ||||||| ||| | ||| | ||| |||||||  || ||||| |||    
T  7554393 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtcca 7554492  T
Q  138 cgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaa 199  Q
    | ||||||||||||||||| || ||||| ||||||||||| |||||||| ||| ||||||||    
T  7554493 ccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatatgataagttcaa 7554554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 52082582 - 52082651
Alignment:
Q  134 cccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||| ||||||||||||||||||||  | |||||||||||||||  |||| | ||||||||||||||||    
T  52082582 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacc 52082651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 9586632 - 9586709
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||| ||||||||| || ||||| ||||||  ||||||||||||| || |  ||||| ||||||||||||||||    
T  9586632 tgcaaaagtccacgacaattcattgaggtcacataaagtgtttcatcattaacatctgtatatgacaagttcaacacc 9586709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 203
Target Start/End: Complemental strand, 19468684 - 19468528
Alignment:
Q  47 ttctctcagttgcgaggagttttcttctatatggttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactc 146  Q
    |||||||||||| ||| | |||||||  | ||| |||||||| |||||||||| ||  |||||||  |  |  || || | |||||| |||| |||  ||    
T  19468684 ttctctcagttgtgagcaattttctttcacatgtttcactcctttctctgtgacatcattacaaccgtccacaaataattccaaaagtccacaacagttc 19468585  T
Q  147 tttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||||||||  ||||||||||||||||   |||||| |||||| |||||||||    
T  19468584 tttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacc 19468528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 43634891 - 43634974
Alignment:
Q  117 agtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaac 200  Q
    |||||||| | |||||| ||||||||| |||||||| ||||||  |||||| |||| ||||   |||||| |||||||||||||    
T  43634891 agtaacaaattcaaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaac 43634974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 29719074 - 29718956
Alignment:
Q  81 ttcactcccttctctgtgatatttttacaacgttttagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatac 180  Q
    |||||||| |||||||||| |||  |||||| ||  |||||||| |||||||| |||| ||||||| |||| || | || ||||| || ||||||||       
T  29719074 ttcactccattctctgtgacattcatacaactttccagtaacaattgcaaaaggccacaacaactcgttgatatgatatggagtgatttatcatcaacgt 29718975  T
Q  181 ttgtatgtgacaagttcaa 199  Q
    | |||| ||||||||||||    
T  29718974 tggtatatgacaagttcaa 29718956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 724 - 653
Alignment:
Q  132 agcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||||| |||| |||| ||||||| || ||||||||||||||| | |||||||||||||||||| ||||||    
T  724 agcccacaacaattcttcgagatcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacc 653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 39176 - 39254
Alignment:
Q  125 gtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    |||||||||||||| ||||||||||||||||||||  ||||||||||||| ||   |||||  || |||||||||||||    
T  39176 gtgcaaaagcccactacaactctttgagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacacc 39254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 88822 - 88878
Alignment:
Q  116 tagtaacaagtgcaaaagcccacgacaactctttgagatcacattgagtgtttcatc 172  Q
    |||| |||| |||||||||||| |||| |||||||||||||||| ||||| ||||||    
T  88822 tagttacaattgcaaaagcccatgacacctctttgagatcacatggagtgcttcatc 88878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 10614586 - 10614663
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||||||||||| |||  |||| |||||||||| |||||||| ||||| ||   | |||| ||||||||||||||||    
T  10614586 tgcaaaagcccactacagttcttcgagatcacatagagtgttttatcattaaccttcgtatttgacaagttcaacacc 10614663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 15092257 - 15092180
Alignment:
Q  126 tgcaaaagcccacgacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacc 203  Q
    ||||||||||||| |||| ||||||||||| ||| |||||||| ||||| ||   |||| | |||||| |||||||||    
T  15092257 tgcaaaagcccacaacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacc 15092180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 1559 - 1523
Alignment:
Q  140 acaactctttgagatcacattgagtgtttcatcatca 176  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  1559 acaattctttgagatcacatagagtgtttcatcatca 1523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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