View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18985_high_2 (Length: 475)
Name: NF18985_high_2
Description: NF18985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18985_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 38829453 - 38829885
Alignment:
| Q |
1 |
tcagaagcaaactttgccgcagcctccatgccaaagtttgacggcgactacgatcattggagcatggtcatggagaatctccttcgatccaaagagtatt |
100 |
Q |
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| T |
38829453 |
tcagaagcaaactttgctgcaacctccataccgaagtttgacggcgactacgatcattgga-------------gaatctccttcgatacaaagagtatt |
38829539 |
T |
|
| Q |
101 |
gggttgttgtcgaatcaggatacacagagccaacaagtagagatgggatgaccgcagtgcaaataaagaatctggatgagatgaagctgaaggatttgaa |
200 |
Q |
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| T |
38829540 |
gggttgctgccgaatcaggatacacagtgccaacaagtagagatgggatgaccgcagtgcaaataaagaatctggatgacatgaagctgaaggatttgaa |
38829639 |
T |
|
| Q |
201 |
ggctaagaattacttgtttcagtcaattgacaagtcaattctgaagaccatcacgcagaaggagacatctaaacagctatgggattccatgaagttgaag |
300 |
Q |
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| T |
38829640 |
ggctaagaattacttgtttcagttaattgacaagtcaattctgaagacgaacacgcagaaggagacatctaaacggctatgggattccatgaagttgaag |
38829739 |
T |
|
| Q |
301 |
tgtcgcggcaatgctcgagtgaagagagcacagctcaatcgtctacgccgagactttgaggtcttagcaatgaagcagggtgaatcaatcactgattatt |
400 |
Q |
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||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38829740 |
tgtcgcgacaatgctcgagtgaagagagcacaactcaatcatctacgccgagactttgaggtcttagcaatgaagcagggtgaatcaatcactgattatt |
38829839 |
T |
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| Q |
401 |
ttggtcgggtaatgacggttgcaaacgacatgaggaattatgggga |
446 |
Q |
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| T |
38829840 |
ttggtcgagtaatgacggttgcaaacgacatgaggaattatgggga |
38829885 |
T |
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