View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18985_high_8 (Length: 251)
Name: NF18985_high_8
Description: NF18985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18985_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 55174848 - 55175065
Alignment:
| Q |
19 |
aatgtcaacaatgttgctcagatttcagccgagttggaaagggaaaggaagaagaatgcggagctcatggaaaaaatatctatgctcgaagctcaggtaa |
118 |
Q |
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| T |
55174848 |
aatgtcaacgatgtttctcagatttcagccgagttggaaagggaaaggaagaagaatgcggagctcatggaaaaaatatctatgctcgaagctcaggtaa |
55174947 |
T |
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| Q |
119 |
gggaaagaaacaccgaaactcaagtaacattatcttttttatttgtactttgcttaaataagtgttgacttgtttatattcaataaaagctgacatctag |
218 |
Q |
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| T |
55174948 |
gggaaagaaacaccgaaactcaagtaacattatcttttttatttgtactttgcttaaataagtgttgacttgtttatattcaataaaagctgacatctag |
55175047 |
T |
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| Q |
219 |
agtgaaagaatgacacag |
236 |
Q |
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| T |
55175048 |
agtgaaagaatgacacag |
55175065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 55178544 - 55178669
Alignment:
| Q |
30 |
tgttgctcagatttcagccgagttggaaagggaaaggaagaagaatgcggagctcatggaaaaaatatctatgctcgaagctcaggtaagggaaagaaac |
129 |
Q |
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| T |
55178544 |
tgttgctgagatttcattggagttggaaagggaaaggctgaaaaatgcggagctcatggaaaaaatatcaatgcacgaagctcagataagggaaagaaac |
55178643 |
T |
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| Q |
130 |
accgaaactcaagtaacattatcttttt |
157 |
Q |
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| T |
55178644 |
accgaaactc--gtaacattatcttttt |
55178669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 50906770 - 50906856
Alignment:
| Q |
21 |
tgtcaacaatgttgctcagatttcagccgagttggaaagggaaaggaagaagaatgcggagctcatggaaaaaatatctatgctcgaa |
108 |
Q |
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| T |
50906770 |
tgtcaacgttgttgctcgtatttcagccgagttggaaagggaaaggcagaagaatgtggagatcatgg-aaaaatatcgatgctcgaa |
50906856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 50906872 - 50906959
Alignment:
| Q |
147 |
attatcttttttatttgtactttgcttaaataagtgttgacttgttt-atattcaataaaagctgacatctagagtgaaagaatgaca |
233 |
Q |
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| T |
50906872 |
attatctttcttattcgtactttacttaaataagtgttgactcattttataatcaacaaaagctaacatctagagtgaaagaatgaca |
50906959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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