View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18985_low_10 (Length: 247)
Name: NF18985_low_10
Description: NF18985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18985_low_10 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 14878300 - 14878069
Alignment:
| Q |
1 |
caacttccaaaaggttactatggtaatgctatagcacttcccgttgcggttacaactgcaggaaaactaattgaaaatccgttggcttatgcattgaatt |
100 |
Q |
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| T |
14878300 |
caacttccatatggttactatggtaacgctatagtatttcccgttgcggttacaactgcaggaaaactaattgaaaatccgttggcttatgcattgaatt |
14878201 |
T |
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| Q |
101 |
tagttaagaaagcaaaagctagtgtcaacaaagagtatatgcattcagtggcagatttaatggttatcaagggtcgtcctcctttaactactgcaggatt |
200 |
Q |
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| T |
14878200 |
tagttaagaaagcaaaagctagtgtcaacaaagagtatatgcattcagtggcagatttaatggttatcaagggtcgtcctcctttaactactgcaggatt |
14878101 |
T |
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| Q |
201 |
atatttagtgtctgatattacacgtgctggat |
232 |
Q |
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| T |
14878100 |
gtatctagtgtctgatgttacacgagctggat |
14878069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 14759440 - 14759670
Alignment:
| Q |
1 |
caacttccaaaaggttactatggtaatgctatagcacttcccgttgcggttacaactgcaggaaaactaattgaaaatccgttggcttatgcattgaatt |
100 |
Q |
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||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| |
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| T |
14759440 |
caacttccaaaaggttattatggtaacgctatagcgtttcccgttgcggttacaactgcaggaaaacttattgaaaatccactggagtatgcattgaatt |
14759539 |
T |
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| Q |
101 |
tagttaagaaagcaaaagctagtgtcaacaaagagtatatgcattcagtggcagatttaatggttatcaagggtcgtcctcctttaactactgcaggatt |
200 |
Q |
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| T |
14759540 |
tagttaagaaagcaaaagctaatgtcaacaaagagtatatgcattcagtggcagatttaatggttatcaagggtcgtcctcctttaactactgctggatt |
14759639 |
T |
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| Q |
201 |
atatttagtgtctgatattacacgtgctgga |
231 |
Q |
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| T |
14759640 |
atatttagtgtctgatattacacgtgctgga |
14759670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 14786436 - 14786265
Alignment:
| Q |
10 |
aaaggttactatggtaatgctatagcacttcccgttgcggttacaactgcaggaaaactaattgaaaatccgttggcttatgcattgaatttagttaaga |
109 |
Q |
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| T |
14786436 |
aaaggttactatggtaacgctttagcaaattcagctatggtaacaaccgcgggaaaacttattgaaaatccattggcgtacgcgttgaatttagttaaga |
14786337 |
T |
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| Q |
110 |
aagcaaaagctagtgtcaacaaagagtatatgcattcagtggcagatttaatggttatcaagggtcgtcctc |
181 |
Q |
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| T |
14786336 |
aagcaaaagctaatgtcacccaagagtacatgcattcgattgcggatttaatggttatcaagggtcgacctc |
14786265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 14767356 - 14767187
Alignment:
| Q |
7 |
ccaaaaggttactatggtaatgctatagcacttcccgttgcggttacaactgcaggaaaactaattgaaaatccgttggcttatgcattgaatttagtta |
106 |
Q |
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| T |
14767356 |
ccaaacggttactacggtaatgcttttgcatttcctgtcgcggttacaaccgcggggaaactaatggaaaatccattagggtatgcactagagttagtta |
14767257 |
T |
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| Q |
107 |
agaaagcaaaagctagtgtcaacaaagagtatatgcattcagtggcagatttaatggttatcaagggtcg |
176 |
Q |
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| T |
14767256 |
aaaaagctaaatctgatgtaactcaagaatacatgcattcagttgcagatttaatggttatcaagggtcg |
14767187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 84354 - 84129
Alignment:
| Q |
7 |
ccaaaaggttactatggtaatgctatagcacttcccgttgcggttacaactgcaggaaaactaattgaaaatccgttggcttatgcattgaatttagtta |
106 |
Q |
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||||| |||||||||||||| |||||||| ||||||| ||| ||||||||| |||||||||||||||||| || ||| | |||||| || ||||||||| |
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| T |
84354 |
ccaaatggttactatggtaacgctatagcgcttcccgctgcaattacaactgtaggaaaactaattgaaaacccattgacgtatgcactggatttagtta |
84255 |
T |
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| Q |
107 |
agaaagcaaaagctagtgtcaacaaagagtatatgcattcagtggcagatttaatggttatcaagggtcgtcctcctttaactactgcaggat-tatatt |
205 |
Q |
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| T |
84254 |
agaaagcaaaagctaatgtcaccgaagagtacatgcattccatggcagatttattggtaatcaagggtagacctcattttactacagc-gaatgcttgtt |
84156 |
T |
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| Q |
206 |
tagtgtctgatattacacgtgctggat |
232 |
Q |
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| T |
84155 |
tagtgtctgatgttacacgtgctggat |
84129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 50 - 232
Target Start/End: Complemental strand, 11999903 - 11999721
Alignment:
| Q |
50 |
ttacaactgcaggaaaactaattgaaaatccgttggcttatgcattgaatttagttaagaaagcaaaagctagtgtcaacaaagagtatatgcattcagt |
149 |
Q |
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| T |
11999903 |
ttacaaccgcaggaaaactaattgaaaatccgttggcatatgctttagatttagttaagaaagaaaaaactaatgttactaaagagtatatgcaatcaac |
11999804 |
T |
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| Q |
150 |
ggcagatttaatggttatcaagggtcgtcctcctttaactactgcaggattatatttagtgtctgatattacacgtgctggat |
232 |
Q |
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| T |
11999803 |
gacagatttaatggttataaagggtcgaccgtattttaataagtcgagattatatttagtttctgatgttacacgtgctggat |
11999721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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