View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18985_low_11 (Length: 247)
Name: NF18985_low_11
Description: NF18985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18985_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 1470558 - 1470328
Alignment:
| Q |
17 |
aagtttgaaagaaaatctacaaaggactgagttagttattcataaatcaactctggaaaatgcaaagcaataataatttgaacaatttgtatcgtaatga |
116 |
Q |
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| T |
1470558 |
aagtttgaaagaaaatctacaaaggaatgagttagttattcataaatcaactctggaaaatgcaaagcaataataatttgaacaatttgtatcgtaatga |
1470459 |
T |
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| Q |
117 |
tgcatattcaaattatattatcattatcattacaataatctaaacaaggaatcaaaataacctaagttgaaaattgatcgatgcggagtaatagaaattt |
216 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1470458 |
tgcatattgaaattatattatcattatcattacaataatctaaacaaggaatcaaaataacctaagttgaaaattgatcgatgcggagtaatagaaattt |
1470359 |
T |
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| Q |
217 |
gaaagaaagaatgagaaaatgaggtaccgat |
247 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
1470358 |
gaaagaaagaatgagaaaatgaggtaccgat |
1470328 |
T |
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