View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18985_low_13 (Length: 227)

Name: NF18985_low_13
Description: NF18985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18985_low_13
NF18985_low_13
[»] chr2 (2 HSPs)
chr2 (14-157)||(37215954-37216097)
chr2 (154-200)||(19713461-19713506)
[»] scaffold0657 (1 HSPs)
scaffold0657 (154-201)||(8525-8572)
[»] chr6 (1 HSPs)
chr6 (154-201)||(19814690-19814737)
[»] chr5 (1 HSPs)
chr5 (154-200)||(25043916-25043964)
[»] chr7 (1 HSPs)
chr7 (154-192)||(7646713-7646751)
[»] chr4 (1 HSPs)
chr4 (154-192)||(41951137-41951175)
[»] chr1 (1 HSPs)
chr1 (154-200)||(20600464-20600514)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 37216097 - 37215954
Alignment:
Q  14 agatgaagggtggagaaagaggtgggattacatgttataaagggagtccgcgtgtggtaaggaaggtgttaatgttgtcaaaggggttgtagagagggaa 113  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37216097 agatgaagggtggagaaagaggggggattacatgttataaagggagtccgcgtgtggtaaggaaggtgttaattttgtcaaaggggttgtagagagggaa 37215998  T
Q  114 gtgaggacatgtgagtagtggtggttgttagtgtgaagggtggt 157  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  37215997 gtgagggcatgtgagtagtggtggttgttagtgtgaagggtggt 37215954  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 19713506 - 19713461
Alignment:
Q  154 tggtatcagagcaataatcctcggacaaatatttttggggtgggacg 200  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  19713506 tggtatcagagcaataatcctcggaaaaata-ttttggggtgggacg 19713461  T

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Target: scaffold0657 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 8572 - 8525
Alignment:
Q  154 tggtatcagagcaataatcctcggacaaatatttttggggtgggacgt 201  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  8572 tggtatcagagcaataatcctcggactaatatttttggggtgggacgt 8525  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 19814737 - 19814690
Alignment:
Q  154 tggtatcagagcaataatcctcggacaaatatttttggggtgggacgt 201  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  19814737 tggtatcagagcaataatcctcggactaatatttttggggtgggacgt 19814690  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 25043964 - 25043916
Alignment:
Q  154 tggtatcagagcaataatcctcggac--aaatatttttggggtgggacg 200  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  25043964 tggtatcagagcaataatcctcggacaaaaatatttttggggtgggacg 25043916  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 7646713 - 7646751
Alignment:
Q  154 tggtatcagagcaataatcctcggacaaatatttttggg 192  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  7646713 tggtatcagagcaataatcctcggacaaatgtttttggg 7646751  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 41951175 - 41951137
Alignment:
Q  154 tggtatcagagcaataatcctcggacaaatatttttggg 192  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  41951175 tggtataagagcaatagtcctcggacaaatatttttggg 41951137  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 20600514 - 20600464
Alignment:
Q  154 tggtatcagagcaataatcctcggac----aaatatttttggggtgggacg 200  Q
    |||||||||||| |||||||||||||    |||||||||||||||||||||    
T  20600514 tggtatcagagcgataatcctcggacaaaaaaatatttttggggtgggacg 20600464  T

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