View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18985_low_3 (Length: 414)
Name: NF18985_low_3
Description: NF18985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18985_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 41088224 - 41087841
Alignment:
| Q |
19 |
attttctcaaagtcaaaatcaagacttgctcaaagtaaactgtgcagattagatatttaagacttgggtcactgcatgcactgctttggattaggacgta |
118 |
Q |
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| T |
41088224 |
atttgctcaaagtcaaaatcaagacttgctcaaagtaaactgtgcagattagatatttaagacttgggtcactgcatgcactgctttggattaggacgta |
41088125 |
T |
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| Q |
119 |
atcgtcataatgcattatatggaaaagtcacaatattgttttagcaaacaatttaggcaccaaatttgaatgcatgtacatctttaggatgattgatgtg |
218 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41088124 |
atcgtcataatgcattatatggaaaaatcacaatattgttttagcaaacaatttaggcaccaaatttgaatgcatgtgcatctttaggatgattgatgtg |
41088025 |
T |
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| Q |
219 |
tatatgaaaccaaattgctgcaattttccattcatgatcaagacagacaacgacattaaaattcaggagcaacaagaaaaatatgctctcatatcctaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41088024 |
tatatgaaaccaaattgctgcaattttccattcatgatcaagacagacaacgacattaaaattcaggagcaacaagaaaaatatgctctcatatcctaca |
41087925 |
T |
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| Q |
319 |
atttgccaccccattaattggcacaccaaaacttttggtggcgtcgcttcttttagtttctagaggtcactacactaaattctg |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41087924 |
atttgccaccccattaattggcacaccaaaacttttggtggcgtcgcttcttttagtttctagaggtcactacactaaattctg |
41087841 |
T |
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