View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18985_low_4 (Length: 382)

Name: NF18985_low_4
Description: NF18985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18985_low_4
NF18985_low_4
[»] chr8 (14 HSPs)
chr8 (18-363)||(12646173-12646518)
chr8 (18-358)||(12651310-12651650)
chr8 (204-335)||(18140242-18140373)
chr8 (184-325)||(12704847-12704988)
chr8 (184-319)||(12723982-12724120)
chr8 (204-335)||(18095534-18095665)
chr8 (235-338)||(12721466-12721569)
chr8 (192-338)||(37829923-37830069)
chr8 (222-335)||(18081329-18081442)
chr8 (193-325)||(6116947-6117079)
chr8 (212-340)||(27183067-27183195)
chr8 (212-259)||(27231090-27231137)
chr8 (199-263)||(4027088-4027152)
chr8 (184-308)||(12712641-12712765)
[»] chr1 (3 HSPs)
chr1 (184-338)||(22536036-22536190)
chr1 (194-338)||(17747257-17747401)
chr1 (199-263)||(51869182-51869246)
[»] chr4 (2 HSPs)
chr4 (199-255)||(4876033-4876089)
chr4 (199-308)||(1326388-1326497)
[»] chr3 (1 HSPs)
chr3 (200-257)||(5387623-5387680)
[»] chr7 (1 HSPs)
chr7 (199-267)||(25627367-25627435)


Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 12646518 - 12646173
Alignment:
Q  18 aagaatgccattaacactagctgaacaccaacaacgaacaaatggacaaccctctcgttgaaaatgaagaggaggtagcaactctaatctgactctattc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12646518 aagaatgccattaacactagctgaacaccaacaacgaacaaatggacaaccctctcgttgaaaatgaagaggaggtggcaactctaatctgactctattc 12646419  T
Q  118 tcaaaattctcaccgtaaaatgtgcacagagtgttgtaatttaggataagattcgtgctgtcttcttcctcattatgtttggatatgaaattagtgcgga 217  Q
    |||||| |||||||| |||||||||||||||||| ||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  12646418 tcaaaactctcaccggaaaatgtgcacagagtgtcgtaatctaggagaagattcttgttgtcttcttcctcattatgtttggatatgaaattagtgcgga 12646319  T
Q  218 acaagttcatgaaatgtgggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttgtgagggatttaagaggcaatttggagagtattga 317  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12646318 acaagttcatgaaatgagggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttgtgagggatttaagaggcaatttggagagtattga 12646219  T
Q  318 gagagcaatgtcatcgtgtatatgcgagggagtactaaccttcttc 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12646218 gagagcaatgtcatcgtgtatatgcgagggagtactaaccttcttc 12646173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 12651650 - 12651310
Alignment:
Q  18 aagaatgccattaacactagctgaacaccaacaacgaacaaatggacaaccctctcgttgaaaatgaagaggaggtagcaactctaatctgactctattc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  12651650 aagaatgccattaacactagctgaacaccaacaacgaacaaatggacaaccctctcgttgaaaatgaagaggatgtggcaactctaatctgactctattc 12651551  T
Q  118 tcaaaattctcaccgtaaaatgtgcacagagtgttgtaatttaggataagattcgtgctgtcttcttcctcattatgtttggatatgaaattagtgcgga 217  Q
    |||||| ||||| || |||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12651550 tcaaaactctcatcggaaaatgtgcaaagagtgtcgtaatttaggataagattcgtgttgtcttcttcctcattatgtttggatatgaaattagtgcgga 12651451  T
Q  218 acaagttcatgaaatgtgggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttgtgagggatttaagaggcaatttggagagtattga 317  Q
    |||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||| || |||||| |||||||||||||||||||||||||| ||    
T  12651450 acaagttcatgaaatgagggttttgaaataaaagagaccattatttcttagcacaggtgagtcgtgtgagagatttaagaggcaatttggagagtataga 12651351  T
Q  318 gagagcaatgtcatcgtgtatatgcgagggagtactaacct 358  Q
    || ||||| ||||||||||||||||||||||||||||||||    
T  12651350 gaaagcaacgtcatcgtgtatatgcgagggagtactaacct 12651310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 335
Target Start/End: Original strand, 18140242 - 18140373
Alignment:
Q  204 gaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttgtgagggatttaagaggcaat 303  Q
    |||||| |||||||||| |||||||||||  |||||||| |||||||| ||||||| ||| ||||||||||| || | | |||| ||||||| |||||||    
T  18140242 gaaattggtgcggaacatgttcatgaaattagggttttggaataaaagtgaccatgattttttagcacaggtaaaacgtttgagagatttaataggcaat 18140341  T
Q  304 ttggagagtattgagagagcaatgtcatcgtg 335  Q
    || ||||| || |||| |||||||||||||||    
T  18140342 ttagagagaatggagaaagcaatgtcatcgtg 18140373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 184 - 325
Target Start/End: Complemental strand, 12704988 - 12704847
Alignment:
Q  184 tcctcattatgtttggatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttg 283  Q
    ||||| || ||||||||||||||||| || ||||||| |||||| ||||  ||| ||||||||||||| ||  ||| ||| ||| |||| ||||||| |     
T  12704988 tcctcgttgtgtttggatatgaaattggttcggaacatgttcataaaatcagggctttgaaataaaagggaaaatgattttttaacacatgtgaatcgtt 12704889  T
Q  284 tgagggatttaagaggcaatttggagagtattgagagagcaa 325  Q
    ||||||||||||||||||||||||| || || |||| |||||    
T  12704888 tgagggatttaagaggcaatttggaaagaatagagaaagcaa 12704847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 184 - 319
Target Start/End: Complemental strand, 12724120 - 12723982
Alignment:
Q  184 tcctcattatgtttggatat---gaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatggtttcttagcacaggtgaatc 280  Q
    ||||||| |||||||||||    |||||| |||||||||| ||||||||||   | |||||| || ||||||||||||| ||| | |||||| ||||| |    
T  12724120 tcctcatcatgtttggatagtaagaaattggtgcggaacatgttcatgaaaatagagttttggaacaaaagagaccatgatttttgagcacaagtgaaac 12724021  T
Q  281 ttgtgagggatttaagaggcaatttggagagtattgaga 319  Q
     |||||| ||||||||||||||||||||||| |||||||    
T  12724020 gtgtgagagatttaagaggcaatttggagagaattgaga 12723982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 335
Target Start/End: Complemental strand, 18095665 - 18095534
Alignment:
Q  204 gaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttgtgagggatttaagaggcaat 303  Q
    |||||| |||||||||| |||||||||||  |||||||| || | ||| ||||||| ||| |||||||||||||| | | |||| ||||| ||||| |||    
T  18095665 gaaattggtgcggaacatgttcatgaaattagggttttggaaaagaagtgaccatgatttgttagcacaggtgaaacgtttgagtgatttgagaggtaat 18095566  T
Q  304 ttggagagtattgagagagcaatgtcatcgtg 335  Q
    |||||||| || |||| ||||||||| |||||    
T  18095565 ttggagagaatggagaaagcaatgtcttcgtg 18095534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 338
Target Start/End: Complemental strand, 12721569 - 12721466
Alignment:
Q  235 gggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttgtgagggatttaagaggcaatttggagagtattgagagagcaatgtcatcgt 334  Q
    |||||||| ||||||||| |||||| ||| ||| |||| ||||||| | |||| |||||||| |||||||||||||| || |||| ||||||||| ||||    
T  12721569 gggttttggaataaaagaaaccatgattttttaacacaagtgaatcgtttgagagatttaagcggcaatttggagagaatagagaaagcaatgtcgtcgt 12721470  T
Q  335 gtat 338  Q
    ||||    
T  12721469 gtat 12721466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 338
Target Start/End: Complemental strand, 37830069 - 37829923
Alignment:
Q  192 atgtttggatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttgtgagggat 291  Q
    ||||||||||| ||||||| || |  |||  |||||||||   |||||||| |||||||||||| ||||||| | | | || || || | ||||||||||    
T  37830069 atgtttggataagaaattattgtgttacatattcatgaaaaaagggttttggaataaaagagacaatggtttttgaacgcaagtaaaacgtgtgagggat 37829970  T
Q  292 ttaagaggcaatttggagagtattgagagagcaatgtcatcgtgtat 338  Q
    |||||||||||||||||||| ||  |||  |||||||||||||||||    
T  37829969 ttaagaggcaatttggagagaataaagattgcaatgtcatcgtgtat 37829923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 335
Target Start/End: Complemental strand, 18081442 - 18081329
Alignment:
Q  222 gttcatgaaatgtgggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttgtgagggatttaagaggcaatttggagagtattgagaga 321  Q
    |||||||||||  ||||||||||| | ||||||||||| ||| |||||||| ||||| | |||||| |||||   ||| ||||| || || || |||| |    
T  18081442 gttcatgaaattagggttttgaaaaagaagagaccatgattttttagcacaagtgaaacgtgtgagagatttgtaaggtaatttagaaagaatggagaaa 18081343  T
Q  322 gcaatgtcatcgtg 335  Q
    ||||||||||||||    
T  18081342 gcaatgtcatcgtg 18081329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 325
Target Start/End: Complemental strand, 6117079 - 6116947
Alignment:
Q  193 tgtttggatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttgtgagggatt 292  Q
    ||||||||||||||||| ||||| |||| | |||| ||||  ||| |||  || ||||| ||  ||| ||| ||| |||| ||||||| | |||||||||    
T  6117079 tgtttggatatgaaattggtgcgaaacatgctcataaaatcagggctttcgaacaaaagggaaaatgattttttaacacatgtgaatcgtttgagggatt 6116980  T
Q  293 taagaggcaatttggagagtattgagagagcaa 325  Q
    |||||||||||||||| || || |||| |||||    
T  6116979 taagaggcaatttggaaagaatagagaaagcaa 6116947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 212 - 340
Target Start/End: Complemental strand, 27183195 - 27183067
Alignment:
Q  212 tgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttgtgagggatttaagaggcaatttggagag 311  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||| |||   | |||| || ||||   |||| ||||||| ||| | ||| |||||    
T  27183195 tgcggaacaagttgatgaaattagggttttgaaataaaagagaccatgatttggaaacacaagtaaatcgcttgagagatttaatagggagtttagagag 27183096  T
Q  312 tattgagagagcaatgtcatcgtgtatat 340  Q
     || || | ||||||||||||||| ||||    
T  27183095 aatagataaagcaatgtcatcgtggatat 27183067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 27231090 - 27231137
Alignment:
Q  212 tgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatg 259  Q
    ||||||||||||| |||||||  |||||||||||||||||||||||||    
T  27231090 tgcggaacaagttgatgaaattagggttttgaaataaaagagaccatg 27231137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 4027152 - 4027088
Alignment:
Q  199 gatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatggttt 263  Q
    |||||||||||||| | ||||| | | ||||||| | |||||| |||||| ||||||||||||||    
T  4027152 gatatgaaattagtcccgaacatggtgatgaaatattggttttcaaataagagagaccatggttt 4027088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 308
Target Start/End: Original strand, 12712641 - 12712765
Alignment:
Q  184 tcctcattatgtttggatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttg 283  Q
    ||||| || ||||| ||||| ||||| || || |||| |||||| ||||  ||| ||||||||||||| ||  ||| ||| ||| |||| ||||||| |     
T  12712641 tcctcgttgtgtttagatattaaattggtacgaaacatgttcataaaatcagggctttgaaataaaagggaaaatgattttttaacacatgtgaatcgtt 12712740  T
Q  284 tgagggatttaagaggcaatttgga 308  Q
    |||| ||||| ||||||| ||||||    
T  12712741 tgagtgatttgagaggcagtttgga 12712765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 338
Target Start/End: Original strand, 22536036 - 22536190
Alignment:
Q  184 tcctcattatgtttggatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttg 283  Q
    ||||||| || |||||||| ||||||| || |||||| |||||  |||   |||||||  |||||||||||||||| ||| | | | || || |||| ||    
T  22536036 tcctcatcatctttggataagaaattattgtggaacatgttcacaaaaaaagggttttcgaataaaagagaccatgatttttgaacgcaagtaaatcgtg 22536135  T
Q  284 tgagggatttaagaggcaatttggagagtattgagagagcaatgtcatcgtgtat 338  Q
     ||||||||||||||||||||||||||| ||  |||  |||||||| ||||||||    
T  22536136 cgagggatttaagaggcaatttggagagaataaagactgcaatgtcgtcgtgtat 22536190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 194 - 338
Target Start/End: Complemental strand, 17747401 - 17747257
Alignment:
Q  194 gtttggatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttgtgagggattt 293  Q
    ||||||||||||||||  | || ||||  ||||||||||   | ||||| || | || |||||||| ||| |||||||| || |||| |||||| |||||    
T  17747401 gtttggatatgaaattgtttcgaaacatattcatgaaataaagcttttggaaaagaaaagaccatgattttttagcacatgtaaatcatgtgagagattt 17747302  T
Q  294 aagaggcaatttggagagtattgagagagcaatgtcatcgtgtat 338  Q
    || ||||| ||||||||| || |||| ||||||||| ||||||||    
T  17747301 aataggcagtttggagagaatagagaaagcaatgtcgtcgtgtat 17747257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 51869246 - 51869182
Alignment:
Q  199 gatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatggttt 263  Q
    |||||||||||||||| |||   |||||||||||| |||| || |||||| ||||||||||||||    
T  51869246 gatatgaaattagtgcagaagttgttcatgaaatgagggtcttcaaataagagagaccatggttt 51869182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 4876089 - 4876033
Alignment:
Q  199 gatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagac 255  Q
    ||||||||||| |||||||||| |||||||||||  |||||||||||||||||||||    
T  4876089 gatatgaaattggtgcggaacatgttcatgaaattagggttttgaaataaaagagac 4876033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 308
Target Start/End: Complemental strand, 1326497 - 1326388
Alignment:
Q  199 gatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatggtttcttagcacaggtgaatcttgtgagggatttaagag 298  Q
    ||||||||||| ||||| ||||    ||||||||  ||||||||||||||||||||| |||||||    ||||| || |||| | |||| ||||| ||||    
T  1326497 gatatgaaattggtgcgaaacataggcatgaaataagggttttgaaataaaagagactatggtttgcatgcacacgtaaatcgtttgagagatttgagag 1326398  T
Q  299 gcaatttgga 308  Q
    | ||||||||    
T  1326397 gtaatttgga 1326388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 5387680 - 5387623
Alignment:
Q  200 atatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagacca 257  Q
    |||||||||| ||||||||||| | ||||||||  |||||||||||||||||||||||    
T  5387680 atatgaaattggtgcggaacaattgcatgaaattagggttttgaaataaaagagacca 5387623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 25627435 - 25627367
Alignment:
Q  199 gatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatggtttctta 267  Q
    |||||||||||| ||||||||| | ||||||||   ||||||| |||||| |||||||||| |||||||    
T  25627435 gatatgaaattattgcggaacatggtcatgaaagaagggttttcaaataagagagaccatgatttctta 25627367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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