View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18985_low_5 (Length: 370)
Name: NF18985_low_5
Description: NF18985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18985_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 2795269 - 2795611
Alignment:
| Q |
11 |
cacagaaacagatggaagagactcaaattattgtcacaactcctgagaagtgggatattattacacgaaagtcgggtgatcgaatttatactcagcttgt |
110 |
Q |
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| T |
2795269 |
cacagaaacagatggaagagactcaaattattgtcacaactcctgagaagtgggatattattacacgaaagtcgggtgatcgaatttatactcagcttgt |
2795368 |
T |
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| Q |
111 |
gaagcttcttatcattgatgagattcatcttcttcatgataacagagggcctgttcttgaaagtatcattgctagaacagtcaggcagattgaaacaacg |
210 |
Q |
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| T |
2795369 |
gaagcttcttatcattgatgagattcatcttcttcatgataacagagggcctgttcttgaaagtatcattgctagaacagtcaggcagattgaaacaacg |
2795468 |
T |
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| Q |
211 |
aaggactatattcggttggtgggattgtctgctacactccctaattttgaagacgtggcacggttcttgcgtgttgatcataataaggggttgttttact |
310 |
Q |
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| T |
2795469 |
aaggactatattcggttggtgggattgtctgctacactccctaattttgaagacgtggcgcggttcttgcgtgttgatcataataaggggttgttttact |
2795568 |
T |
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| Q |
311 |
ttgataatagttatagacccgttcctctttctcagcagtttat |
353 |
Q |
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| T |
2795569 |
ttgataatagttatagacccgttcctctttctcagcagtttat |
2795611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 29262790 - 29263120
Alignment:
| Q |
19 |
cagatggaagagactcaaattattgtcacaactcctgagaagtgggatattattacacgaaagtcgggtgatcgaatttatactcagcttgtgaagcttc |
118 |
Q |
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| T |
29262790 |
cagatcgaagagactcaaattattgtgacaactcctgagaagtgggatattatcacccgaaagtcgggagatcgaacttatacgcagcttgtgaagcttg |
29262889 |
T |
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| Q |
119 |
ttatcattgatgagattcatcttcttcatgataacagagggcctgttcttgaaagtatcattgctagaacagtcaggcagattgaaacaacgaaggacta |
218 |
Q |
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| T |
29262890 |
tcatcattgatgaaattcatctccttcatgataacagagggcctgttcttgaaagtattgttgctagaacagttaggcagattgaaacatctaaggatta |
29262989 |
T |
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| Q |
219 |
tattcggttggtgggattgtctgctacactccctaattttgaagacgtggcacggttcttgcgtgttgatcataataaggggttgttttactttgataat |
318 |
Q |
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|||||| |||||||||||||| ||||| |||||||||| |||||| ||||||| |||| |||||||||||| || ||||| || ||||| |||||||| |
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| T |
29262990 |
tattcgtttggtgggattgtcggctactctccctaattatgaagatgtggcactgttcctgcgtgttgatctgaacaagggtttattttattttgataac |
29263089 |
T |
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| Q |
319 |
agttatagacccgttcctctttctcagcagt |
349 |
Q |
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| T |
29263090 |
agttatagacctgttcctctttctcagcagt |
29263120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 29189413 - 29189353
Alignment:
| Q |
17 |
aacagatggaagagactcaaattattgtcacaactcctgagaagtgggatattattacacg |
77 |
Q |
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||||||| ||||||| ||| ||||| || |||||||||||||| || || ||||||||||| |
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| T |
29189413 |
aacagatagaagagagtcagattatggtgacaactcctgagaaatgagacattattacacg |
29189353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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