View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18985_low_6 (Length: 330)
Name: NF18985_low_6
Description: NF18985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18985_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 87 - 316
Target Start/End: Original strand, 18514826 - 18515056
Alignment:
| Q |
87 |
taaacatgtctaaa-cgttactcactttggtccttctcctagtgtatgttcattaaggaagcctactatggtcacaaatacactgccaattggtccatat |
185 |
Q |
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| T |
18514826 |
taaacatgtctaaaacgttactcactttggtccttctcctagtgtatgttcattaaggaagcctactatggtcacaaatacactgccaattggtccatat |
18514925 |
T |
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| Q |
186 |
atatactattcactattaattttcttgaaaatatgcactagctattgaattcataagtcacatctaagatttttcttatgatggaaccaggtttgccgat |
285 |
Q |
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| T |
18514926 |
atatactattcactattaattttcttgaaaatatgcactagctattaaattcataagtcacatctgagatttttcttatgatcggaccaggtttgccgat |
18515025 |
T |
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| Q |
286 |
gatgtaatagaagcatcagatggaaatatat |
316 |
Q |
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| T |
18515026 |
gatgtaatagaagcatcagatggaaatatat |
18515056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 18514306 - 18514378
Alignment:
| Q |
17 |
cttttataaaagagatcttatttaaggaaaccgtcaaaagtcaaaaaagttttgatttcgtatacatccataa |
89 |
Q |
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| T |
18514306 |
cttttttaaaagagatcttatttaaggaaaccgtcaaaagtcaaaacagtcttgatttcgtatatgtccataa |
18514378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 18490357 - 18490402
Alignment:
| Q |
269 |
gaaccaggtttgccgatgatgtaatagaagcatcagatggaaatat |
314 |
Q |
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| T |
18490357 |
gaaccaggtttgcagatgatgtaatagaagcatcagatggaaatat |
18490402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 316
Target Start/End: Original strand, 18508866 - 18508905
Alignment:
| Q |
277 |
tttgccgatgatgtaatagaagcatcagatggaaatatat |
316 |
Q |
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| T |
18508866 |
tttgcagatgatataatagaagcatcagatggaaatatat |
18508905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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