View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18986_high_1 (Length: 840)
Name: NF18986_high_1
Description: NF18986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18986_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 342 - 825
Target Start/End: Original strand, 27839854 - 27840320
Alignment:
| Q |
342 |
ttatttacatgactaaaaattcacaaacacttattttttaggatgatgtcattatgttatcacttatgtgtcgatgtattttttgaataataatatagtc |
441 |
Q |
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| T |
27839854 |
ttatttacatgactaaaaattcacaaacacttattttttatgatgatgtcattatgttatcacttatgtgtcgatgtattttttgtataataatatagcc |
27839953 |
T |
|
| Q |
442 |
ccatatctcggaatttctagattcatacataaaaacattggcgaaacttctaaactaaatgacaccattataaggtgtttactaatatgactgtaatttt |
541 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27839954 |
ccatatctcggaatttctagattcatacataaaaacattggcgaaacttctaaactaaatgacaccattataaggtgtttactaatatgactgtaatttt |
27840053 |
T |
|
| Q |
542 |
ttactatgataggaccaattggccacttcagaagaaataaaaactttgattttttgtgatattgaagaatgccttagaattttatgtgtacctcactaat |
641 |
Q |
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| T |
27840054 |
ttactatgatgggaccaattggccacttcagaagaaataaaaattttgattttttgtgatattgaagaatgccttagaattttatgtgtacctcactaat |
27840153 |
T |
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| Q |
642 |
------gacattgtgatagatcacacgtactctttgacaaggtctacccacttttaaacttgggttttattagggatttgaccaagagattcaccgatat |
735 |
Q |
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| T |
27840154 |
ataatagacattgtgatagaacacacgtactctttg---------------------acttgggttttattagggatttgactaagagattcaccgacat |
27840232 |
T |
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| Q |
736 |
aaacactaacaaagtaacaatatatttcataaatatttttatcataatttattataggaacttgtttaacaagttttagtaatacatatt |
825 |
Q |
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| T |
27840233 |
aaacactaacaaagtaaca--atatttcataaatatttttatcataatttattataggaacttgtttaacaagttttagtaatacatatt |
27840320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 27839579 - 27839855
Alignment:
| Q |
1 |
acgtagagcatgtagatcaggcagatgaatccacctacaagaaagcaggtgttgggacactaaataatggaagattgggtcgcaattcggccaacaattg |
100 |
Q |
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| T |
27839579 |
acgtagagcatgtagaa---gcagatgaatccacctacaagaaagcaggtgttgggacactaaataatggaagattgggtcgcaattcggccaacaattg |
27839675 |
T |
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| Q |
101 |
gatcctcatatgatccactcaaataaccccacaagtagaacaaagaaaatcag---agtgaaaacccaaaagggatt------ggatgctaccccatgct |
191 |
Q |
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| T |
27839676 |
gatcctcatatgatccactcaaataaccccacaagtagaacaaataacatcagactagtgaagacccaaaagggattggatgcggatgctaccccatgct |
27839775 |
T |
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| Q |
192 |
tgcttcaaatattcttttttagtgtagaccatatcaaaactttatcttgcataatatacagaaagtccttttaatttctt |
271 |
Q |
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| T |
27839776 |
tgcttcaaatattcttttttagtgtagaccatatcaaaactttatcttgcataatatacagaaagtccttttaatttctt |
27839855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 783 - 821
Target Start/End: Original strand, 34429161 - 34429199
Alignment:
| Q |
783 |
tttattataggaacttgtttaacaagttttagtaataca |
821 |
Q |
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| T |
34429161 |
tttattatagaaacttgtttaacaagttttagtattaca |
34429199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 51164182 - 51164084
Alignment:
| Q |
139 |
aacaaagaaaatcaga---gtgaaaacccaaaagggattggatgctaccccatgcttgcttcaaatattcttttttagtgtagaccatatcaaaacttt |
234 |
Q |
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| T |
51164182 |
aacaaagaaaatcagactagtgaagacctaaaagggattggatgctgccctaagcttgcttcaaatgtttttttttagtgtggaccatatcaaaacttt |
51164084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 782 - 822
Target Start/End: Original strand, 2067062 - 2067102
Alignment:
| Q |
782 |
atttattataggaacttgtttaacaagttttagtaatacat |
822 |
Q |
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| T |
2067062 |
atttattatagaaacttgttaaacaagttttagtaatacat |
2067102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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