View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18986_high_17 (Length: 239)
Name: NF18986_high_17
Description: NF18986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18986_high_17 |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 33674579 - 33674368
Alignment:
| Q |
21 |
agctgcagcaacagccccacggtcattaaattccacaacaaaaataaaaaccaccgccatagctgccaccacaacgatgtttccaccatgcaaaaggttc |
120 |
Q |
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||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33674579 |
agctgcagcaacaaccctgccgtcattaaattccacaacaaaaataaaaaccaccgccatagctgccaccacaacgatgtttccaccatgcaaaaggttc |
33674480 |
T |
|
| Q |
121 |
tagaaatcctcaatgatgttgatgctactttttcttctccttctcctttagtggcatttcctggatttggaaagagtcccattgggaaaaagattagagt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33674479 |
tagaaatcctcaatgatgttgatgctactttttcttctccttctcctttagtggcatttcctggatttggaaagagtcccattgggaaaaaaattagagt |
33674380 |
T |
|
| Q |
221 |
caccgattcacc |
232 |
Q |
| |
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||| |||||||| |
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|
| T |
33674379 |
cactgattcacc |
33674368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 33692996 - 33692779
Alignment:
| Q |
21 |
agctgcagcaacagccccacggtcattaaattccacaacaaaaataaaaaccaccgccatagctgccaccacaacgatgtttccaccatgcaaaaggttc |
120 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||||||||||| |||||||||| |
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| T |
33692996 |
agctgcagcaacagccccgcgttcattaaattccacaacaaaaataaaaaccaccaccatggtcgccaccgcaacgatgtttccaccattcaaaaggttc |
33692897 |
T |
|
| Q |
121 |
tagaaatcctcaatgatgttgatgctact---ttttcttctccttctcctttagtggcatttcctggatttggaaagagtcccattgggaaaaagattag |
217 |
Q |
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| |||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||| |
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| T |
33692896 |
ttgaaatcctcaatgatgttgatgcttcttcattttcttctccttctcctttagtgacatttcctggatttggaaaaactcccattgggaaaaaaattag |
33692797 |
T |
|
| Q |
218 |
agtcaccgattcaccatt |
235 |
Q |
| |
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|||||| ||||| ||||| |
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| T |
33692796 |
agtcactgattcgccatt |
33692779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 33685769 - 33685552
Alignment:
| Q |
21 |
agctgcagcaacagccccacggtcattaaattccacaacaaaaataaaaaccaccgccatagctgccaccacaacgatgtttccaccatgcaaaaggttc |
120 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| ||||||||| ||| | | || || ||||||||||||||||||| ||||| |||||||||| |
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| T |
33685769 |
agctgcagcaacagccccactgccattaaattccacagcaaaaataataactatcaccgcggccgccaccacaacgatgtttcaaccattcaaaaggttc |
33685670 |
T |
|
| Q |
121 |
tagaaatcctcaatgatgttgatg---ctactttttcttctccttctcctttagtggcatttcctggatttggaaagagtcccattgggaaaaagattag |
217 |
Q |
| |
|
||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |
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|
| T |
33685669 |
tagaaatcctcaatgatattgatgtttcttctttttcttctccttctcctttagtggcatttcctggttttggaaaaagtcccattgggaaaaaaattag |
33685570 |
T |
|
| Q |
218 |
agtcaccgattcaccatt |
235 |
Q |
| |
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|||||| ||||| ||||| |
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| T |
33685569 |
agtcactgattctccatt |
33685552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 33663979 - 33663762
Alignment:
| Q |
21 |
agctgcagcaacagccccacggtcattaaattccacaacaaaaataaaaaccaccgccatagctgccaccacaacgatgtttccaccatgcaaaaggttc |
120 |
Q |
| |
|
|||||||||||||||||| | | |||||||||||||||||||||||| ||| | | || || ||||||||||||||||||||||||| |||||||||| |
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| T |
33663979 |
agctgcagcaacagccccgccgccattaaattccacaacaaaaataataactatcaccgcggccgccaccacaacgatgtttccaccattcaaaaggttc |
33663880 |
T |
|
| Q |
121 |
tagaaatcctcaatgatgttgatgctactt---tttcttctccttctcctttagtggcatttcctggatttggaaagagtcccattgggaaaaagattag |
217 |
Q |
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|
||||||| || |||||||||||| || ||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
33663879 |
tagaaattcttaatgatgttgattcttcttctttttcttctccttctcctttagtgacatttcctggatttggaaaaagtcccattgggaaaaaaattag |
33663780 |
T |
|
| Q |
218 |
agtcaccgattcaccatt |
235 |
Q |
| |
|
|||| | ||||||||||| |
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| T |
33663779 |
agtcgctgattcaccatt |
33663762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 86782 - 86993
Alignment:
| Q |
21 |
agctgcagcaacagccccacggtcattaaattccacaacaaaaataaaaaccaccgccatagctgccaccacaacgatgtttccaccatgcaaaaggttc |
120 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||||| |
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|
| T |
86782 |
agctgcagcaacagccccgccgtcattaaattccataacaaaaataaaaaccaccatcatggccgccaccacaacgatgtttccaccattcaaaaggttc |
86881 |
T |
|
| Q |
121 |
tagaaatcctcaatgatgttgatgctac---tttttcttctccttctcctttagtggcatttcctggatttggaaagagtcccattgggaaaaagattag |
217 |
Q |
| |
|
|||||||||| ||||| ||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||| |
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| T |
86882 |
tagaaatccttaatgaagttgatgcttcttttttttcttctccttctcctttagtgacatttcctggatttggaaaaagtcccattggaaaaaaaattag |
86981 |
T |
|
| Q |
218 |
agtcaccgattc |
229 |
Q |
| |
|
|||||||||||| |
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|
| T |
86982 |
agtcaccgattc |
86993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 103451 - 103668
Alignment:
| Q |
21 |
agctgcagcaacagccccacggtcattaaattccacaacaaaaataaaaaccaccgccatagctgccaccacaacgatgtttccaccatgcaaaaggttc |
120 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| ||||||||||||||||| | || ||||||||||| | |||||||||||||| ||||||||| |
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|
| T |
103451 |
agctgcagcaacagccccgccgtcattaaattccttaacaaaaataaaaaccatcaccgcggctgccaccacgatgatgtttccaccattcaaaaggttt |
103550 |
T |
|
| Q |
121 |
tagaaatcctcaatgatgttgatgctacttttt---cttctccttctcctttagtggcatttcctggatttggaaagagtcccattgggaaaaagattag |
217 |
Q |
| |
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||||||| |||||| | ||||||||| ||| || |||||||||||||||||||| |||||||||| |||||||| |||||| |||| ||||| |||| |
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| T |
103551 |
tagaaattctcaataaagttgatgcttcttctttctcttctccttctcctttagtgacatttcctgggtttggaaaaagtcccgttggaaaaaaatttag |
103650 |
T |
|
| Q |
218 |
agtcaccgattcaccatt |
235 |
Q |
| |
|
|||||| ||||| ||||| |
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|
| T |
103651 |
agtcactgattctccatt |
103668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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