View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18986_high_6 (Length: 470)

Name: NF18986_high_6
Description: NF18986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18986_high_6
NF18986_high_6
[»] chr7 (4 HSPs)
chr7 (1-464)||(1375257-1375720)
chr7 (138-286)||(19028289-19028438)
chr7 (138-286)||(20726198-20726347)
chr7 (274-332)||(6445316-6445373)
[»] chr5 (8 HSPs)
chr5 (113-341)||(28421368-28421593)
chr5 (119-309)||(31022291-31022482)
chr5 (121-197)||(31393138-31393214)
chr5 (31-111)||(15135112-15135199)
chr5 (292-367)||(15394637-15394712)
chr5 (185-232)||(23167001-23167048)
chr5 (207-307)||(23927011-23927111)
chr5 (185-251)||(31477360-31477426)
[»] chr6 (9 HSPs)
chr6 (121-369)||(10345426-10345673)
chr6 (113-286)||(22607792-22607966)
chr6 (169-251)||(7099213-7099295)
chr6 (119-231)||(3754441-3754552)
chr6 (274-353)||(19885979-19886057)
chr6 (143-231)||(6109419-6109507)
chr6 (138-246)||(14480094-14480201)
chr6 (119-206)||(31344214-31344301)
chr6 (143-232)||(7412455-7412544)
[»] chr2 (8 HSPs)
chr2 (121-342)||(23150797-23151018)
chr2 (121-342)||(23562054-23562275)
chr2 (205-367)||(19031588-19031751)
chr2 (205-347)||(30463509-30463650)
chr2 (203-341)||(12094254-12094393)
chr2 (113-286)||(10886704-10886880)
chr2 (127-248)||(25880916-25881037)
chr2 (151-270)||(5356615-5356735)
[»] chr3 (10 HSPs)
chr3 (119-286)||(15242820-15242988)
chr3 (206-367)||(3824387-3824548)
chr3 (119-249)||(15203837-15203967)
chr3 (208-309)||(3559049-3559150)
chr3 (184-288)||(50097855-50097958)
chr3 (182-343)||(36639739-36639903)
chr3 (114-248)||(17782025-17782158)
chr3 (114-248)||(19090652-19090785)
chr3 (185-286)||(11578742-11578844)
chr3 (209-246)||(44451563-44451600)
[»] chr4 (5 HSPs)
chr4 (199-337)||(16643421-16643559)
chr4 (123-251)||(14331920-14332048)
chr4 (205-343)||(8974385-8974523)
chr4 (138-251)||(13033571-13033684)
chr4 (151-243)||(34845452-34845544)
[»] scaffold0091 (1 HSPs)
scaffold0091 (272-353)||(1148-1228)
[»] chr8 (8 HSPs)
chr8 (199-247)||(1565432-1565480)
chr8 (113-251)||(37296485-37296622)
chr8 (207-282)||(1038936-1039012)
chr8 (113-190)||(31178408-31178485)
chr8 (113-190)||(31178920-31178997)
chr8 (113-190)||(31179432-31179509)
chr8 (208-249)||(9251659-9251700)
chr8 (274-343)||(37296386-37296454)
[»] chr1 (4 HSPs)
chr1 (145-287)||(31066266-31066408)
chr1 (119-238)||(14746682-14746801)
chr1 (207-287)||(16517592-16517670)
chr1 (208-307)||(30894082-30894182)
[»] scaffold0213 (1 HSPs)
scaffold0213 (203-309)||(25919-26025)
[»] scaffold0233 (1 HSPs)
scaffold0233 (138-249)||(15981-16093)
[»] scaffold0039 (1 HSPs)
scaffold0039 (316-353)||(113402-113439)


Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 1375257 - 1375720
Alignment:
Q  1 aatatatttaaaataagatatcattaagatataactaatcattattggttgtattacattacatcctttaacagcagcgctagcattggatattgatcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1375257 aatatatttaaaataagatatcattaagatataactaatcattattggttgtattacattacatcctttaacagcagcgctagcattggatattgatcca 1375356  T
Q  101 agtacaatgtgagtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaa 200  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  1375357 agtacaatgtgagtgttagcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtgtaatcgtcggggagagattcgcggaaa 1375456  T
Q  201 cgtgggaaagagacgttacagttcgtttgaaccggtctctgttgctccgagtactctctcgcggggaaggagagtgttgcgagtaatagtaccaaatgca 300  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1375457 catgggaaagagacgttacagttcgtttgaaccggtctctgttgctccgagtactccctcgcggggaaggagagtgttgcgagtaatagtaccaaatgca 1375556  T
Q  301 gtatttgggttgtaattgttattgggcctaagcaattgggccttaggtgtttggccagtccagaacactaacaaatccaaaactcttttaaaactagact 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  1375557 gtatttgggttgtaattgttattgggcctaagcaattgggccttaggtgtttggccggtccaaaacactaacaaatccaaaactcttttaaaactagact 1375656  T
Q  401 attacttttcccaccctcctctgtgaagcctaatcagatttactttatatgtttttgatgatgt 464  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1375657 attacttttaccaccctcctctgtgaagcctaatcagatttactttatatgtttttgatgatgt 1375720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 286
Target Start/End: Complemental strand, 19028438 - 19028289
Alignment:
Q  138 cacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaa-gagacgttacagttcgtttgaaccggt 236  Q
    |||| ||||||||||||||  ||||  || ||||| ||| ||  || |||| |||| ||| ||||||||||| || | |||||  ||||||||||| |||    
T  19028438 cacgtgtgtccggcggttataaaatcgtaagaagtgtaaccgctggtgagatattcgcgggaacgtgggaaaagacatgttactattcgtttgaacaggt 19028339  T
Q  237 ctctgttgctccgagtactctctcgcggggaaggagagtgttgcgagtaa 286  Q
    ||| ||||||||||| || |  ||||||||||||||  ||||||||||||    
T  19028338 ctcagttgctccgagcaccccatcgcggggaaggagtctgttgcgagtaa 19028289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 286
Target Start/End: Original strand, 20726198 - 20726347
Alignment:
Q  138 cacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaa-gagacgttacagttcgtttgaaccggt 236  Q
    |||| ||||||||||||||  ||||  || ||||| ||| ||  || |||| |||| ||| ||||||||||| || | |||||  ||||||||||| |||    
T  20726198 cacgtgtgtccggcggttataaaatcgtaagaagtgtaaccgctggtgagatattcgcgggaacgtgggaaaagacatgttactattcgtttgaacaggt 20726297  T
Q  237 ctctgttgctccgagtactctctcgcggggaaggagagtgttgcgagtaa 286  Q
    ||| ||||||||||| || |  ||||||||||||||  ||||||||||||    
T  20726298 ctcagttgctccgagcaccccatcgcggggaaggagtctgttgcgagtaa 20726347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 332
Target Start/End: Original strand, 6445316 - 6445373
Alignment:
Q  274 gtgttgcgagtaatagtaccaaatgcagtatttgggttgtaattgttattgggcctaag 332  Q
    ||||||||||||||| |||||||||||| ||||||| |||| ||| |||||||||||||    
T  6445316 gtgttgcgagtaatattaccaaatgcagaatttgggctgtatttg-tattgggcctaag 6445373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 113 - 341
Target Start/End: Complemental strand, 28421593 - 28421368
Alignment:
Q  113 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagag 212  Q
    ||||| ||| ||||| |||||| | |||| |||  ||||||||||||| || |||||||| ||| |  || |||||||||   || |||||||| | |||    
T  28421593 gtgtttgcatagccgctgtaaggcacacgtgtgctcggcggttacgaatttgtaggaagtgtaaccaccgaggagagatttgtgggaacgtgggca-gag 28421495  T
Q  213 acgttacagttcgtttgaaccggtctctgttgctccgagtactctctcgcggggaaggagagtgttgcgagtaatagtaccaaatgcagtatttgggttg 312  Q
    |||||||||||||||||||| |||||| ||||||||||| || | ||| ||| ||||| | ||||||||||||||| | |||||||| | ||||||||||    
T  28421494 acgttacagttcgtttgaactggtctcagttgctccgagcaccccctcacggagaaggggtgtgttgcgagtaatattgccaaatgc-ggatttgggttg 28421396  T
Q  313 taattgttattgggcctaagcaattgggc 341  Q
    |||||| ||||||||||||| ||||||||    
T  28421395 taattg-tattgggcctaagtaattgggc 28421368  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 119 - 309
Target Start/End: Complemental strand, 31022482 - 31022291
Alignment:
Q  119 gcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtggg-aaagagacgtt 217  Q
    |||||| ||||||||| | |||| ||| | |||||||||||||| |   ||||| ||| |||||| || | |||  ||| |||||||| ||||| |||||    
T  31022482 gcagagtcgttgtaaggcacacgtgtggctggcggttacgaaatcactagaagtataaccgtcggtgatatatttgcgggaacgtgggtaaagacacgtt 31022383  T
Q  218 acagttcgtttgaaccggtctctgttgctccgagta-ctctctcgcggggaaggagagtgttgcgagtaatagtaccaaatgcagtatttggg 309  Q
    || |||||||||||| |||||| ||||||||| | | | | ||||||||||||| | ||||||||||||||  | ||||||||||||||||||    
T  31022382 actgttcgtttgaacaggtctcagttgctccgtgcacccccctcgcggggaaggggtgtgttgcgagtaat-ttgccaaatgcagtatttggg 31022291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 31393138 - 31393214
Alignment:
Q  121 agagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacgg 197  Q
    |||||||||||||| | |||||||| || ||||||||||||| || |||||| ||| ||||||||| ||||||||||    
T  31393138 agagccgttgtaaggcacacgcgtgccctgcggttacgaaatcatgggaagtgtaaccgtcggggaaagattcacgg 31393214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 15135112 - 15135199
Alignment:
Q  31 ataactaatcattattggttgtattacattacatcctttaacagcagc-------gctagcattggatattgatccaagtacaatgtg 111  Q
    |||| |||| |||||||| ||| ||||||||||||||| |||||||||       ||||||||||||| |||||||||||||||||||    
T  15135112 ataattaataattattggctgttttacattacatccttaaacagcagcagcagaagctagcattggatgttgatccaagtacaatgtg 15135199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 367
Target Start/End: Original strand, 15394637 - 15394712
Alignment:
Q  292 ccaaatgcagtatttgggttgtaattgttattgggcctaagcaattgggccttaggtgtttggccagtccagaaca 367  Q
    |||||||| ||||||||| | |  ||||||||||||||||||||| |||||| |||| |||| || ||||||||||    
T  15394637 ccaaatgcggtatttgggctctgtttgttattgggcctaagcaatcgggcctaaggtctttgaccggtccagaaca 15394712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 23167001 - 23167048
Alignment:
Q  185 gagagattcacggaaacgtgggaaagagacgttacagttcgtttgaac 232  Q
    |||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  23167001 gagatattcgcgggaacgtgggaaagagacgttacagttcgtttgaac 23167048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 207 - 307
Target Start/End: Complemental strand, 23927111 - 23927011
Alignment:
Q  207 aaagagacgttacagttcgtttgaaccggtctctgttgctccgagtactctctc-gcggggaaggagagtgttgcgagtaatagtaccaaatgcagtatt 305  Q
    ||||||||||||| ||||||||||||  ||||| |||||||||||||| | |||   |||||||| | ||||||||||||| | || ||||||||| |||    
T  23927111 aaagagacgttactgttcgtttgaacaagtctcagttgctccgagtaccccctcatgggggaaggggtgtgttgcgagtaa-attatcaaatgcagcatt 23927013  T
Q  306 tg 307  Q
    ||    
T  23927012 tg 23927011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 31477426 - 31477360
Alignment:
Q  185 gagagattcacggaaacgtgggaaagagacgttacagttcgtttgaaccggtctctgttgctccgag 251  Q
    |||| |||| ||| ||||||||||||| ||||||| |||| |||||||  ||||| |||||||||||    
T  31477426 gagatattcgcgggaacgtgggaaagaaacgttactgttcatttgaacatgtctcagttgctccgag 31477360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 121 - 369
Target Start/End: Original strand, 10345426 - 10345673
Alignment:
Q  121 agagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttaca 220  Q
    |||||||||||||| | |||| ||| | | || ||| |||||| | | |||||||| || ||||||||||||   || ||| |||||||||||| |||||    
T  10345426 agagccgttgtaagtcacacgtgtgcctgacgattaggaaattgtggaaagtttaaccgccggggagagattggggggaacatgggaaagagacattaca 10345525  T
Q  221 gttcgtttgaaccggtctctgttgctccgagtactctctcgcggggaaggagagtgttgcgagtaatagtaccaaatgcagtatttgggttgtaattgtt 320  Q
     ||||||||||| ||||| |||||||||||| |  | ||||| ||||||||| ||||||||||||| | | || ||||| ||||||||     |||||||    
T  10345526 attcgtttgaactggtctttgttgctccgagcatcccctcgcagggaaggagtgtgttgcgagtaa-aatgccgaatgcggtatttggaccagaattgtt 10345624  T
Q  321 attgggcctaagcaattgggccttaggtgtttggccagtccagaacact 369  Q
    ||||||||||| |||||||||| ||||| || | || ||||| ||||||    
T  10345625 attgggcctaaacaattgggccctaggtcttcgaccggtccataacact 10345673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 286
Target Start/End: Original strand, 22607792 - 22607966
Alignment:
Q  113 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagag 212  Q
    ||||| |||||||||||||||| | ||   |||  || ||||||| ||||  | |||||| |||||| ||||||||||||| ||| ||||| ||||||||    
T  22607792 gtgtttgcagagccgttgtaaggcacaaatgtgctcgacggttacaaaatcgtgggaagtgtaatcgccggggagagattcgcgggaacgttggaaagag 22607891  T
Q  213 acgttacagttcgtttgaaccggtctctgttgctccgagta-ctctctcgcggggaaggagagtgttgcgagtaa 286  Q
    ||||||||||||||||||||  |||||| || ||||||| | | | ||||| ||||||| | |||||||||||||    
T  22607892 acgttacagttcgtttgaactagtctctattactccgagcacccccctcgcagggaaggtgtgtgttgcgagtaa 22607966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 7099295 - 7099213
Alignment:
Q  169 aagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaaccggtctctgttgctccgag 251  Q
    |||| ||| |||||| |||| |||| ||  ||||||||||||||||||||  |||||||||||| |||||| |||||||||||    
T  7099295 aagtgtaaccgtcggtgagatattcgcgagaacgtgggaaagagacgttattgttcgtttgaacaggtctcagttgctccgag 7099213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 231
Target Start/End: Original strand, 3754441 - 3754552
Alignment:
Q  119 gcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgtta 218  Q
    |||||||| ||||||||| |||| |||  | ||||||||||| || |||||||| ||| || || |||||||||| ||| ||||| ||  |||||| |||    
T  3754441 gcagagccattgtaagacacacgtgtgctctgcggttacgaatttgtaggaagtgtaaccgccgaggagagattcgcgggaacgtagg-cagagacatta 3754539  T
Q  219 cagttcgtttgaa 231  Q
    |||||||||||||    
T  3754540 cagttcgtttgaa 3754552  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 353
Target Start/End: Original strand, 19885979 - 19886057
Alignment:
Q  274 gtgttgcgagtaatagtaccaaatgcagtatttgggttgtaattgttattgggcctaagcaattgggccttaggtgtttg 353  Q
    ||||||||||||||  | |||||||||||||||||| |||  |||||||||||| |||||||| |||||| |||| ||||    
T  19885979 gtgttgcgagtaatt-tcccaaatgcagtatttgggctgtgtttgttattgggcttaagcaatagggcctaaggtctttg 19886057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 6109507 - 6109419
Alignment:
Q  143 gtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaa 231  Q
    ||||| ||||||||||||||  | | |||| |||  ||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||    
T  6109507 gtgtctggcggttacgaaatcgtggaaagtgtaactgtcggcgagagattcgcgagaacgtggaaaagagatgttacagttcgtttgaa 6109419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 14480094 - 14480201
Alignment:
Q  138 cacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaaccggtc 237  Q
    |||| ||||||||| ||||||||||  | | || | ||| |||||| |||| | |||||| |||||||||| ||| |||| |||||||||||||| ||||    
T  14480094 cacgtgtgtccggcagttacgaaatcgtggaaaatgtaaccgtcggagagaaactcacgggaacgtgggaa-gaggcgttgcagttcgtttgaactggtc 14480192  T
Q  238 tctgttgct 246  Q
    ||| |||||    
T  14480193 tcttttgct 14480201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 31344301 - 31344214
Alignment:
Q  119 gcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtggg 206  Q
    |||||||||||||||| | |||| ||| ||| ||||||||||||  || ||||| ||| || ||| |||| |||||||| ||||||||    
T  31344301 gcagagccgttgtaaggcacacgtgtgaccgacggttacgaaatcgtaagaagtgtaaccgccggtgagatattcacgggaacgtggg 31344214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 7412455 - 7412544
Alignment:
Q  143 gtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaac 232  Q
    ||||||| ||||||||||||  || ||||| ||| || ||| |||| |||| ||| ||| ||||||| |||||||||  |||||||||||    
T  7412455 gtgtccgccggttacgaaatcgtaagaagtgtaaccgccggtgagatattcgcgggaacttgggaaatagacgttactattcgtttgaac 7412544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 121 - 342
Target Start/End: Original strand, 23150797 - 23151018
Alignment:
Q  121 agagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttaca 220  Q
    |||||||||||| | | |||| ||||||| ||||||||||||  | ||||||  || |  | | ||||||||||||| ||||||||||||||||||||||    
T  23150797 agagccgttgtatggcacacgtgtgtccgacggttacgaaatcgtgggaagtgaaacctccagtgagagattcacgggaacgtgggaaagagacgttaca 23150896  T
Q  221 gttcgtttgaaccggtctctgttgctccgagta-ctctctcgcggggaaggagagtgttgcgagtaatagtaccaaatgcagtatttgggttgtaattgt 319  Q
     || |||||||| |||||| |||||| |  | | | | ||| ||||||||| | ||||||||||||| | | |||||||| ||||||||| || ||||||    
T  23150897 tttagtttgaacgggtctcagttgcttcatgcacccccctctcggggaaggggtgtgttgcgagtaa-actgccaaatgcggtatttgggctggaattgt 23150995  T
Q  320 tattgggcctaagcaattgggcc 342  Q
    |||| ||||||||||| ||||||    
T  23150996 tattcggcctaagcaactgggcc 23151018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 121 - 342
Target Start/End: Original strand, 23562054 - 23562275
Alignment:
Q  121 agagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttaca 220  Q
    |||||||||||| | | |||| ||||||| ||||||||||||  | ||||||  || |  | | ||||||||||||| ||||||||||||||||||||||    
T  23562054 agagccgttgtatggcacacgtgtgtccgacggttacgaaatcgtgggaagtgaaacctccagtgagagattcacgggaacgtgggaaagagacgttaca 23562153  T
Q  221 gttcgtttgaaccggtctctgttgctccgagta-ctctctcgcggggaaggagagtgttgcgagtaatagtaccaaatgcagtatttgggttgtaattgt 319  Q
     || |||||||| |||||| |||||| |  | | | | ||| ||||||||| | ||||||||||||| | | |||||||| ||||||||| || ||||||    
T  23562154 tttagtttgaacgggtctcagttgcttcatgcacccccctctcggggaaggggtgtgttgcgagtaa-actgccaaatgcggtatttgggctggaattgt 23562252  T
Q  320 tattgggcctaagcaattgggcc 342  Q
    |||| ||||||||||| ||||||    
T  23562253 tattcggcctaagcaactgggcc 23562275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 205 - 367
Target Start/End: Original strand, 19031588 - 19031751
Alignment:
Q  205 ggaaagagacgttacagttcgtttgaaccggtctctgttgctccgagtactctc-tcgcggggaaggagagtgttgcgagtaatagtaccaaatgcagta 303  Q
    |||||||||||||| ||||||||  ||  |||||||||||||||||| || | | ||| |||||||| | ||||||||||||||| |  | ||||| |||    
T  19031588 ggaaagagacgttatagttcgttaaaattggtctctgttgctccgagcacccccgtcgtggggaaggggtgtgttgcgagtaatattgtctaatgcggta 19031687  T
Q  304 tttgggttgtaattgttattgggcctaagcaattgggccttaggtgtttggccagtccagaaca 367  Q
    |||||  ||||||||||||||||||||| |||||||| ||||||| |||| || ||| ||||||    
T  19031688 tttggactgtaattgttattgggcctaaacaattgggtcttaggtctttgaccggtcaagaaca 19031751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 205 - 347
Target Start/End: Complemental strand, 30463650 - 30463509
Alignment:
Q  205 ggaaagagacgttacagttcgtttgaaccggtctctgttgctccgagtactctctcgcggggaaggagagtgttgcgagtaatagtaccaaatgcagtat 304  Q
    |||||| ||||||||||||| |||||||  ||| || |||||| ||| || | ||||| ||||||| |  |||||||||||||| | |||||||||| ||    
T  30463650 ggaaagtgacgttacagttcatttgaacttgtcgcttttgctctgagcaccccctcgcagggaaggggtatgttgcgagtaatattgccaaatgcagaat 30463551  T
Q  305 ttgggttgtaattgttattgggcctaagcaattgggccttagg 347  Q
    |||||||||  ||| |||||||| |||||||||||||| ||||    
T  30463550 ttgggttgtgtttg-tattgggcttaagcaattgggccatagg 30463509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 203 - 341
Target Start/End: Original strand, 12094254 - 12094393
Alignment:
Q  203 tgggaaagagacgttacagttcgtttgaaccggtctctgttgctccgagtactctc--tcgcggggaaggagagtgttgcgagtaatagtaccaaatgca 300  Q
    ||||||||||||  ||||||||| |||||| | |||||||| ||| ||| || | |  |||||| ||||| | ||||||||||||||| | ||||||| |    
T  12094254 tgggaaagagacagtacagttcgattgaactgatctctgtttctctgagcaccccccctcgcggagaaggggtgtgttgcgagtaatattgccaaatgta 12094353  T
Q  301 gtatttgggttgtaattgttattgggcctaagcaattgggc 341  Q
    |||||||||||||   || ||||||||||||||||||||||    
T  12094354 gtatttgggttgt-ggtggtattgggcctaagcaattgggc 12094393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 286
Target Start/End: Complemental strand, 10886880 - 10886704
Alignment:
Q  113 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtggg-aaaga 211  Q
    ||||| |||||||||||| ||| | || | ||| ||| || |||||||||  | |||||| |||  ||||||||||||||| ||  |||||||| |||||    
T  10886880 gtgtttgcagagccgttgaaaggcacatgtgtgcccgacgattacgaaatcgtgggaagtgtaacagtcggggagagattcgcgagaacgtggggaaaga 10886781  T
Q  212 gacgttacagttcgtttgaaccggtctctgttgctccgagta--ctctctcgcggggaaggagagtgttgcgagtaa 286  Q
    ||  ||||||||||||||||| | ||||| |||||| | | |  | ||||||||||||| | | |||||||||||||    
T  10886780 gattttacagttcgtttgaactgttctctattgctctgtgcaccccctctcgcggggaaagggtgtgttgcgagtaa 10886704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 248
Target Start/End: Complemental strand, 25881037 - 25880916
Alignment:
Q  127 gttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgt 226  Q
    |||||||| | |||| |||||||||||| || |||| |   ||||| ||| || | | |||| |||| ||| ||||||||||||||||||||| ||||||    
T  25881037 gttgtaaggcacacgtgtgtccggcggtcacaaaatcagtagaagtgtaaccgccagtgagatattcgcgggaacgtgggaaagagacgttactgttcgt 25880938  T
Q  227 ttgaaccggtctctgttgctcc 248  Q
    ||||||   |||||||||||||    
T  25880937 ttgaacatatctctgttgctcc 25880916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 270
Target Start/End: Original strand, 5356615 - 5356735
Alignment:
Q  151 cggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtggg-aaagagacgttacagttcgtttgaaccggtctctgttgctccg 249  Q
    ||||||||||||  | || ||| ||| |||||||||||||||| ||| | | |||| ||||||||||| |||||||||||||| ||||||  ||||||      
T  5356615 cggttacgaaatcgtgggtagtgtaaccgtcggggagagattcgcgggatcatgggtaaagagacgttgcagttcgtttgaactggtctcaattgctcta 5356714  T
Q  250 agtactctctcgcggggaagg 270  Q
     |||| | |||||||||||||    
T  5356715 tgtaccccctcgcggggaagg 5356735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 119 - 286
Target Start/End: Complemental strand, 15242988 - 15242820
Alignment:
Q  119 gcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgtta 218  Q
    ||||||||||| |||| | |||| ||||||||||||||||||||||   ||||| ||| |||||| |||| ||||  || ||||||||||||||| ||||    
T  15242988 gcagagccgttttaaggcacacgtgtgtccggcggttacgaaattagtagaagtgtaaccgtcggtgagatattcgtgggaacgtgggaaagagatgtta 15242889  T
Q  219 cagttcgtttgaaccggtctctgttgctccgagtactct-ctcgcggggaaggagagtgttgcgagtaa 286  Q
    | |||||||||||| |||||| ||||||||  | || || ||||||| ||||| | |||||||||||||    
T  15242888 ctgttcgtttgaacaggtctcagttgctccatgcaccctcctcgcggagaaggggtgtgttgcgagtaa 15242820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 206 - 367
Target Start/End: Original strand, 3824387 - 3824548
Alignment:
Q  206 gaaagagacgttacagttcgtttgaaccggtctctgttgctccgagtactctc--tcgcggggaaggagagtgttgcgagtaatagtaccaaatgcagta 303  Q
    |||||||| ||||||| | |||||||||||| | |||||||||| | || | |  ||||| |||||| | |||||||||||||   |||||||||| |||    
T  3824387 gaaagagatgttacagattgtttgaaccggtgtttgttgctccgtgcaccccccatcgcgcggaaggggtgtgttgcgagtaacc-taccaaatgcggta 3824485  T
Q  304 tttgggttgtaattgttattgggcctaagcaattgggccttaggtgtttggccagtccagaaca 367  Q
    |||||| || | ||||||||||||||||||||||||||||||||| |||| |||||||| ||||    
T  3824486 tttgggctgga-ttgttattgggcctaagcaattgggccttaggtctttgaccagtccataaca 3824548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 15203967 - 15203837
Alignment:
Q  119 gcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgtta 218  Q
    ||||||||||| |||| | |||| |||||||| ||||||||||| |   ||||| ||| |||||| |||| ||||  || ||||||||||||||| ||||    
T  15203967 gcagagccgttttaaggcacacgtgtgtccggtggttacgaaatcagtagaagtgtaaccgtcggtgagatattcgtgggaacgtgggaaagagatgtta 15203868  T
Q  219 cagttcgtttgaaccggtctctgttgctccg 249  Q
    | |||||||||||  |||||| |||||||||    
T  15203867 ctgttcgtttgaataggtctcagttgctccg 15203837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 309
Target Start/End: Complemental strand, 3559150 - 3559049
Alignment:
Q  208 aagagacgttacagttcgtttgaaccggtctctgttgctccgagtactctctcgcggggaaggagagtgttgcgagtaatagtaccaaatgcagtatttg 307  Q
    |||||| ||| |||||||||||||||||||||  |||||| | | || | ||||||||||||| | ||||||||||||||  | |||||||| |||||||    
T  3559150 aagagatgttgcagttcgtttgaaccggtctcgtttgctctgtgcaccccctcgcggggaaggggtgtgttgcgagtaatgttgccaaatgcggtatttg 3559051  T
Q  308 gg 309  Q
    ||    
T  3559050 gg 3559049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 288
Target Start/End: Complemental strand, 50097958 - 50097855
Alignment:
Q  184 ggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaaccggtctctgttgctccgagta-ctctctcgcggggaaggagagtgttgcga 282  Q
    |||||||||| ||| ||| |||  ||| |||| |||||||||||||||| |||||| ||||||||||| | ||||||| ||| ||||| | |||||||||    
T  50097958 ggagagattcgcgggaacatgg--aagggacgctacagttcgtttgaactggtctcagttgctccgagcacctctctcacggagaaggggtgtgttgcga 50097861  T
Q  283 gtaata 288  Q
    ||||||    
T  50097860 gtaata 50097855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 343
Target Start/End: Original strand, 36639739 - 36639903
Alignment:
Q  182 ggggagagattcacggaaacgtgggaaa-gagacgttacagttcgtttgaaccggtctctgttgctccgagtactctctcgcggggaaggagagtgttgc 280  Q
    ||||||| |||| ||||||||||||||| |||||||||| ||||||||||||  ||||  |||||| |||| || | ||||| | ||||| | ||||| |    
T  36639739 ggggagatattcgcggaaacgtgggaaaagagacgttacggttcgtttgaacatgtcttagttgcttcgagcaccccctcgcagagaaggggtgtgttac 36639838  T
Q  281 gagtaatagtaccaaat---gcagtatttgggttgtaattgttattgggcctaagcaattgggcct 343  Q
    |||||| | | ||||||   || | ||||||| |  | ||||||||| ||||||||||||||||||    
T  36639839 gagtaa-actgccaaatgcggcggcatttgggcttgatttgttattgagcctaagcaattgggcct 36639903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 248
Target Start/End: Complemental strand, 17782158 - 17782025
Alignment:
Q  114 tgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagaga 213  Q
    |||| |||||||| ||||| | | |||| |||||||| ||||||||||| ||   |||| |||  |   ||||||||||| ||| | |||||||||||||    
T  17782158 tgtttgcagagccattgtatggcacacgtgtgtccggtggttacgaaatcatgacaagtgtaacagctagggagagattcgcggga-cgtgggaaagaga 17782060  T
Q  214 cgttacagttcgtttgaaccggtctctgttgctcc 248  Q
    ||||||| ||||||||||| |||||  ||||||||    
T  17782059 cgttacaattcgtttgaactggtcttagttgctcc 17782025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 248
Target Start/End: Complemental strand, 19090785 - 19090652
Alignment:
Q  114 tgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagaga 213  Q
    |||| |||||||| ||||| | | |||| |||||||| ||||||||||| ||   |||| |||  |   ||||||||||| ||| | |||||||||||||    
T  19090785 tgtttgcagagccattgtatggcacacgtgtgtccggtggttacgaaatcatgacaagtgtaacagctagggagagattcgcggga-cgtgggaaagaga 19090687  T
Q  214 cgttacagttcgtttgaaccggtctctgttgctcc 248  Q
    ||||||| ||||||||||| |||||  ||||||||    
T  19090686 cgttacaattcgtttgaactggtcttagttgctcc 19090652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 11578844 - 11578742
Alignment:
Q  185 gagagattcacggaaacgtgggaaagagacgttacagttcgtttgaaccggtctctgttgctccgagta-ctctctcgcggggaaggagagtgttgcgag 283  Q
    ||||||||| ||| ||||||||||||| || || |||||||||||||| |||||  |||||| || ||| | | ||||||| |||||   ||||||||||    
T  11578844 gagagattcgcgggaacgtgggaaagaaacattgcagttcgtttgaactggtcttagttgcttcgtgtacccccctcgcggagaaggtatgtgttgcgag 11578745  T
Q  284 taa 286  Q
    |||    
T  11578744 taa 11578742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 44451600 - 44451563
Alignment:
Q  209 agagacgttacagttcgtttgaaccggtctctgttgct 246  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  44451600 agagacgttacagttcgtttgaactggtctcagttgct 44451563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 199 - 337
Target Start/End: Complemental strand, 16643559 - 16643421
Alignment:
Q  199 aacgtggg-aaagagacgttacagttcgtttgaaccggtctctgttgctccgagtactctctcgcggggaaggagagtgttgcgagtaatagtaccaaat 297  Q
    |||||||| |||||||||||   |||| ||||||| |||||| ||||||||||| || ||||||||| ||||| | ||||||||||||||  | ||||||    
T  16643559 aacgtgggtaaagagacgtttatgttcatttgaacaggtctcagttgctccgagcaccctctcgcggagaaggggtgtgttgcgagtaat-ttcccaaat 16643461  T
Q  298 gcagtatttgggttgtaattgttattgggcctaagcaatt 337  Q
    |||| ||||||| |  | ||||||||||||||||| ||||    
T  16643460 gcagcatttgggcttgatttgttattgggcctaagtaatt 16643421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 14332048 - 14331920
Alignment:
Q  123 agccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagt 222  Q
    |||| ||||| ||| ||||  |||||||||||||||||||  | ||| || ||| ||  || ||||||| ||| ||||| ||||||||||||||||||||    
T  14332048 agcctttgtacgacacacgtatgtccggcggttacgaaatcgtgggatgtataaccgctggtgagagatacacagaaacatgggaaagagacgttacagt 14331949  T
Q  223 tcgtttgaaccggtctctgttgctccgag 251  Q
    ||||| |||| |||||| ||| |||||||    
T  14331948 tcgttcgaactggtctcagttactccgag 14331920  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 343
Target Start/End: Original strand, 8974385 - 8974523
Alignment:
Q  205 ggaaagagacgttacagttcgtttgaaccggtctctgttgctccgagtac-tctctcgcggggaaggagagtgttgcgagtaatagtaccaaatgcagta 303  Q
    |||||||||| ||||||||||||||||| |||||| |||||||||||  | || | || || ||||| | ||||||||||||||| |  ||||| ||  |    
T  8974385 ggaaagagacattacagttcgtttgaactggtctcagttgctccgagcccatcccccgtggagaaggggtgtgttgcgagtaatattgtcaaattcataa 8974484  T
Q  304 tttgggttgtaattgttattgggcctaagcaattgggcct 343  Q
    |||||| |||| ||| ||||||| ||||| ||||||||||    
T  8974485 tttgggctgtatttg-tattgggtctaagtaattgggcct 8974523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 13033684 - 13033571
Alignment:
Q  138 cacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaaccggtc 237  Q
    |||| ||||||||||||||||||||    |||||| ||| |||| | |||| |||| ||| |||||| |||| ||||||||| |||||||||||  ||||    
T  13033684 cacgtgtgtccggcggttacgaaatcgggggaagtgtaaccgtcagtgagatattcgcgggaacgtgagaaatagacgttactgttcgtttgaataggtc 13033585  T
Q  238 tctgttgctccgag 251  Q
    || |||||| ||||    
T  13033584 tcagttgctacgag 13033571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 34845544 - 34845452
Alignment:
Q  151 cggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaaccggtctctgtt 243  Q
    ||||||||||||  | |||||| ||| || ||| |||| |||  ||| || ||||||||||||||||| ||||| ||||||| ||||||||||    
T  34845544 cggttacgaaatcgtgggaagtgtaaccgccggtgagatatttgcgggaatgtgggaaagagacgttaaagttcatttgaactggtctctgtt 34845452  T

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Target: scaffold0091 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 1148 - 1228
Alignment:
Q  272 gagtgttgcgagtaatagtaccaaatgcagtatttgggttgtaattgttattgggcctaagcaattgggccttaggtgtttg 353  Q
    ||||||||||||||| | |||||||||| ||||||||| ||   ||||||||||||||||| ||||||||||||||| ||||    
T  1148 gagtgttgcgagtaaaa-taccaaatgcggtatttgggctgagtttgttattgggcctaagaaattgggccttaggtatttg 1228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 1565480 - 1565432
Alignment:
Q  199 aacgtgggaaagagacgttacagttcgtttgaaccggtctctgttgctc 247  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||    
T  1565480 aacgtgggaaagagacgttacagttcgtttgaactggtctcagttgctc 1565432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 113 - 251
Target Start/End: Complemental strand, 37296622 - 37296485
Alignment:
Q  113 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagag 212  Q
    ||||| |||||||||||||||| | || | |||  ||||||||| ||| |  |||||||| ||| ||||| ||||||||||  || || ||||| | |||    
T  37296622 gtgtttgcagagccgttgtaaggcacatgtgtgctcggcggttatgaattcgtaggaagtgtaaccgtcgaggagagattcgagggaatgtgggca-gag 37296524  T
Q  213 acgttacagttcgtttgaaccggtctctgttgctccgag 251  Q
    |||||||| ||||||||||| | |||| |||||||||||    
T  37296523 acgttacaattcgtttgaactgatctcagttgctccgag 37296485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 282
Target Start/End: Complemental strand, 1039012 - 1038936
Alignment:
Q  207 aaagagacgttacagttcgtttgaaccggtctctgttgctccgagta-ctctctcgcggggaaggagagtgttgcga 282  Q
    ||||||||||||||||||||||||||  ||||||||||||||| | | | | ||||||||||||| | |||||||||    
T  1039012 aaagagacgttacagttcgtttgaactagtctctgttgctccgtgcacccccctcgcggggaaggggtgtgttgcga 1038936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 31178408 - 31178485
Alignment:
Q  113 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagaga 190  Q
    ||||| |||||||||||||||| | |||| ||| ||| ||||||| |||| || |||||| ||| |||||||||||||    
T  31178408 gtgtttgcagagccgttgtaaggcacacgtgtgcccgacggttacaaaatcatgggaagtgtaaacgtcggggagaga 31178485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 31178920 - 31178997
Alignment:
Q  113 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagaga 190  Q
    ||||| |||||||||||||||| | |||| ||| ||| ||||||| |||| || |||||| ||| |||||||||||||    
T  31178920 gtgtttgcagagccgttgtaaggcacacgtgtgcccgacggttacaaaatcatgggaagtgtaaacgtcggggagaga 31178997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 31179432 - 31179509
Alignment:
Q  113 gtgttggcagagccgttgtaagacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagaga 190  Q
    ||||| |||||||||||||||| | |||| ||| ||| ||||||| |||| || |||||| ||| |||||||||||||    
T  31179432 gtgtttgcagagccgttgtaaggcacacgtgtgcccgacggttacaaaatcatgggaagtgtaaacgtcggggagaga 31179509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 9251659 - 9251700
Alignment:
Q  208 aagagacgttacagttcgtttgaaccggtctctgttgctccg 249  Q
    ||||||||||||||| ||||||||| |||||| |||||||||    
T  9251659 aagagacgttacagtacgtttgaactggtctcagttgctccg 9251700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 37296454 - 37296386
Alignment:
Q  274 gtgttgcgagtaatagtaccaaatgcagtatttgggttgtaattgttattgggcctaagcaattgggcct 343  Q
    ||||||||||||||| |  |||||||  |||||||| |||| |||| |||| ||||||||||||||||||    
T  37296454 gtgttgcgagtaatattgtcaaatgcgctatttgggatgtagttgt-attgagcctaagcaattgggcct 37296386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 145 - 287
Target Start/End: Complemental strand, 31066408 - 31066266
Alignment:
Q  145 gtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgttacagttcgtttgaaccggtctctgttg 244  Q
    |||| ||||||||||||| |  | |||| ||| || ||| |||| |||| ||  |||||||||||||||| |||  ||||||||||||  ||||| ||||    
T  31066408 gtccagcggttacgaaatcagggaaagtgtaaccgccggtgagatattcgcgagaacgtgggaaagagacattattgttcgtttgaacaagtctcagttg 31066309  T
Q  245 ctccgagtactctctcgcggggaaggagagtgttgcgagtaat 287  Q
    ||||||| || | | ||||| ||||| | ||||||||||||||    
T  31066308 ctccgagcacccccccgcggagaaggggtgtgttgcgagtaat 31066266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 14746801 - 14746682
Alignment:
Q  119 gcagagccgttgtaa-gacccacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtgggaaagagacgtt 217  Q
    ||||||||||||||| ||| |||| ||||||| ||||||| |||| | || |||| ||| |  |||  ||| ||||| || ||||||| |||||||||||    
T  14746801 gcagagccgttgtaatgacacacgtgtgtccgacggttacaaaatcagagaaagtgtaaccaccggtaagatattcatgggaacgtgg-aaagagacgtt 14746703  T
Q  218 acagttcgtttgaaccggtct 238  Q
    ||||||||||||||| |||||    
T  14746702 acagttcgtttgaactggtct 14746682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 207 - 287
Target Start/End: Original strand, 16517592 - 16517670
Alignment:
Q  207 aaagagacgttacagttcgtttgaaccggtctctgttgctccgagtactctctcgcggggaaggagagtgttgcgagtaat 287  Q
    ||||||||||||| |||||||||||| |||||| |||||||||||  | | ||||||| ||||  | ||||||||||||||    
T  16517592 aaagagacgttactgttcgtttgaacaggtctcagttgctccgag--ccccctcgcggagaagaggtgtgttgcgagtaat 16517670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 30894082 - 30894182
Alignment:
Q  208 aagagacgttacagttcgtttgaaccggtctctgttgctccgagtactctctcgcggggaaggagagtgttgcgagtaatag-taccaaatgcagtattt 306  Q
    |||||||||| ||||| ||||||||  |||||  |||||||| | || | |||||| |||||| | |||||||||||||| | || ||||||| ||||||    
T  30894082 aagagacgttgcagtttgtttgaacatgtctcatttgctccgtgcaccccctcgcgaggaaggggtgtgttgcgagtaattgttatcaaatgcggtattt 30894181  T
Q  307 g 307  Q
    |    
T  30894182 g 30894182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 309
Target Start/End: Original strand, 25919 - 26025
Alignment:
Q  203 tgggaaagagacgttacagttcgtttgaaccggtctctgttgctccgagta-ctctctcgcggggaaggagagtgttgcgagtaatagtaccaaatgcag 301  Q
    |||||||||||||||| ||||||||| ||| |||||||||| |||| || | ||| ||| ||||||| | | ||||||| |||||||| |||||||| ||    
T  25919 tgggaaagagacgttaaagttcgtttcaactggtctctgttcctccaagcatctc-ctcccggggaaagggtgtgttgcaagtaatagcaccaaatgtag 26017  T
Q  302 tatttggg 309  Q
     |||||||    
T  26018 aatttggg 26025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 249
Target Start/End: Complemental strand, 16093 - 15981
Alignment:
Q  138 cacgcgtgtccggcggttacgaaattataggaagtttaatcgtcggggagagattcacggaaacgtggg-aaagagacgttacagttcgtttgaaccggt 236  Q
    |||| |||| |||||||||||||||  | |||||| ||| || ||| |||| ||||  || |||||||  ||||| |||||||||||||||||||| |||    
T  16093 cacgtgtgttcggcggttacgaaatcgtgggaagtgtaaccgccggtgagatattcgtgggaacgtggataaagatacgttacagttcgtttgaactggt 15994  T
Q  237 ctctgttgctccg 249  Q
    |  ||||||||||    
T  15993 caatgttgctccg 15981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 113439 - 113402
Alignment:
Q  316 ttgttattgggcctaagcaattgggccttaggtgtttg 353  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  113439 ttgttattgagcctaagcaattgggccttaggtctttg 113402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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