View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18986_low_10 (Length: 389)
Name: NF18986_low_10
Description: NF18986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18986_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 6232978 - 6232611
Alignment:
| Q |
13 |
tgaaggactcaagtatattcacaaaaaagggtttgttcattgtgatttgaagttgcccaacattctcgtattcgagaacggaaacattaagatttcagat |
112 |
Q |
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| T |
6232978 |
tgaaggactcaagtatattcacaaaaaagggtttgttcattgtgatttgaagttgcccaacattctcgtattcgagaacggaaacattaagatttcagat |
6232879 |
T |
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| Q |
113 |
ttcggccttgcgaaagagataggtgtagaacaaggtgaaaagtggcaaccgagaggaactccgatgattatgtcaccagaagcagtgaatgatagtgttt |
212 |
Q |
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| T |
6232878 |
ttcgggcttgcgaaagagacaggtgtagaacaaggtgaaaagtggcaaccgagaggaactccgatgattatgtcaccagaagcagtgaatgatagtgtgt |
6232779 |
T |
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| Q |
213 |
atgaatcgccagccgatatatgggctcttggttgcgccgtcgtggagatgattaccggagaac---ccgcatggaatgagtcagatatgttaatgttgac |
309 |
Q |
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| T |
6232778 |
atgaatcgtcagccgatatatgggctcttggttgcgccgtcgtggagatgattaccggagaacccgccgcatggaatgaatcagatatgttgatgttgac |
6232679 |
T |
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| Q |
310 |
gattcgaattggggttggagaagaattgccaaagattccagacgaattatcacaagaaggaaaagatt |
377 |
Q |
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| T |
6232678 |
gattcgaattggtgttggagaagaattgccaaaaattccagaggaattatcacaagaaggaaaagatt |
6232611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 262
Target Start/End: Complemental strand, 6222116 - 6221953
Alignment:
| Q |
99 |
ttaagatttcagatttcggccttgcgaaagagataggtgtagaacaaggtgaaaagtggcaaccgagaggaactccgatgattatgtcaccagaagcagt |
198 |
Q |
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| T |
6222116 |
ttaagatttcggattttggccttgctaaggagaaaggtctaaaacatggtggaaaattggaatgtaggggaactccattgtatatgtcaccagaagcggt |
6222017 |
T |
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| Q |
199 |
gaatgatagtgtttatgaatcgccagccgatatatgggctcttggttgcgccgtcgtggagatg |
262 |
Q |
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| T |
6222016 |
gaacgagagtgtttatgaatcaccggcagatatatgggctcttggttgcgctattgtggagatg |
6221953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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