View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18986_low_11 (Length: 377)

Name: NF18986_low_11
Description: NF18986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18986_low_11
NF18986_low_11
[»] chr6 (14 HSPs)
chr6 (19-367)||(896902-897250)
chr6 (79-221)||(1193133-1193275)
chr6 (103-223)||(1182207-1182330)
chr6 (121-222)||(1237479-1237580)
chr6 (240-314)||(1182389-1182464)
chr6 (242-300)||(896558-896617)
chr6 (146-223)||(793878-793956)
chr6 (314-367)||(1237201-1237254)
chr6 (16-69)||(1182092-1182145)
chr6 (314-367)||(1193486-1193539)
chr6 (18-69)||(1193022-1193073)
chr6 (132-186)||(1176683-1176737)
chr6 (314-367)||(1182508-1182561)
chr6 (239-284)||(1237368-1237414)
[»] chr4 (3 HSPs)
chr4 (116-221)||(10203758-10203863)
chr4 (314-367)||(12857204-12857257)
chr4 (16-69)||(10203494-10203547)
[»] scaffold0302 (1 HSPs)
scaffold0302 (314-367)||(19741-19794)
[»] chr7 (1 HSPs)
chr7 (314-357)||(20257183-20257226)


Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 896902 - 897250
Alignment:
Q  19 acaaatattaccttcagtctagaatattaatgatgtttagaagtttgatatgacaatagatattttgttctaactcacaagtattttgttccaacactta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  896902 acaaatattaccttcagtctagaatattaatgatgtttagaagtttgatatgacaatagatattttgttctaactcacaagtattttgttccaacactta 897001  T
Q  119 taaaaaacagtattgtgccttctttgttgcattgtggatgtatatggtttcttagaaattttttacttgctctctaatgagtatgtggttaagaaaatgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  897002 taaaaaacagtattgtgccttctttgttgcattgtggatgtatatggtttcttagaaattttttacttgctctctaatgagtatgtggttaagaaaatgt 897101  T
Q  219 gataagtgctctctagtgagcatattgaatacttaggatatgttattgcatattgagtacaaatggggttttggatgagatgctggagtccttgatttta 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  897102 gataagtgctctctagtgagcatattgaatacttaggatatgttattgcatattgagtacaaatggggttttggatgagatgctggagtccttgatttta 897201  T
Q  319 ggcctaagatttgttattggtagtgctctggtgtgttattaggtgatga 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  897202 ggcctaagatttgttattggtagtgctctggtgtgttattaggtgatga 897250  T

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Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 1193133 - 1193275
Alignment:
Q  79 tattttgttctaactcacaagtattttgttccaacacttataaaaaacagtattgtgccttctttgttgcattgtggatgtatatggtttcttagaaatt 178  Q
    |||||||||| || || |||||||||||||||||||||||||||  |||||| |||||||||||| |||||| || |||| ||||| ||||| |||| ||    
T  1193133 tattttgttccaagtcccaagtattttgttccaacacttataaattacagtaatgtgccttctttattgcatcgtagatgaatatgatttctaagaattt 1193232  T
Q  179 ttttacttgctctctaatgagtatgtggttaagaaaatgtgat 221  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1193233 ttttacttgctctctaatgagtatgtggttaagaaaatgtgat 1193275  T

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Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 103 - 223
Target Start/End: Original strand, 1182207 - 1182330
Alignment:
Q  103 tttgttccaacacttataaaaaacagtattgtgccttctttgttgcattgtggatgtatatggtttcttagaaattttttacttgctct---ctaatgag 199  Q
    ||||||||||||||||||||| || ||| |||||||||||| ||| |||||||||||||||||||||| |||| |||||||||||||||   |||||||     
T  1182207 tttgttccaacacttataaaataccgtactgtgccttctttattgtattgtggatgtatatggtttctaagaatttttttacttgctctctactaatgaa 1182306  T
Q  200 tatgtggttaagaaaatgtgataa 223  Q
    ||||||||||||||||||||||||    
T  1182307 tatgtggttaagaaaatgtgataa 1182330  T

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Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 1237580 - 1237479
Alignment:
Q  121 aaaaacagtattgtgccttctttgttgcattgtggatgtatatggtttcttagaaattttttacttgctctctaatgagtatgtggttaagaaaatgtga 220  Q
    |||||| ||| || ||||||||| |||||||||||||||||||||||||| |||| | |||||||||| |||||||||||||||||||||||||||||||    
T  1237580 aaaaactgtactgcgccttctttattgcattgtggatgtatatggtttctaagaattattttacttgcactctaatgagtatgtggttaagaaaatgtga 1237481  T
Q  221 ta 222  Q
    ||    
T  1237480 ta 1237479  T

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Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 240 - 314
Target Start/End: Original strand, 1182389 - 1182464
Alignment:
Q  240 atattgaatacttaggatat-gttattgcatattgagtacaaatggggttttggatgagatgctggagtccttgat 314  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||  |||||||||||||    
T  1182389 atattgaatacttaggatattgttattgcatattgagtacaaatggggttttggatcagataatggagtccttgat 1182464  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 896558 - 896617
Alignment:
Q  242 attgaatacttaggatat-gttattgcatattgagtacaaatggggttttggatgagatg 300  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  896558 attgaatacttaggatattgttattgcatattgagtacaaatggggttttggatgagatg 896617  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 793956 - 793878
Alignment:
Q  146 tgcattgtggatgtatatggtttcttagaaa-ttttttacttgctctctaatgagtatgtggttaagaaaatgtgataa 223  Q
    |||||||||| |||||||||||||| ||||  ||||||||||||| | |||||| ||||||||||||||||||||||||    
T  793956 tgcattgtggttgtatatggtttctaagaatcttttttacttgctttttaatgaatatgtggttaagaaaatgtgataa 793878  T

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Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 1237254 - 1237201
Alignment:
Q  314 ttttaggcctaagatttgttattggtagtgctctggtgtgttattaggtgatga 367  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1237254 ttttatgcctaagatttgttattggtagtgctctggtgttttattaggtgatga 1237201  T

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Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 1182092 - 1182145
Alignment:
Q  16 caaacaaatattaccttcagtctagaatattaatgatgtttagaagtttgatat 69  Q
    |||||||||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  1182092 caaacaaatattaccttcaggctagaattttaatgttgtttagaagtttgatat 1182145  T

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Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 314 - 367
Target Start/End: Original strand, 1193486 - 1193539
Alignment:
Q  314 ttttaggcctaagatttgttattggtagtgctctggtgtgttattaggtgatga 367  Q
    |||||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  1193486 ttttaggcctaagatttgttataggtagtattctggtgtgttattaggtgatga 1193539  T

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Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 1193022 - 1193073
Alignment:
Q  18 aacaaatattaccttcagtctagaatattaatgatgtttagaagtttgatat 69  Q
    |||||||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  1193022 aacaaatattaccttcaggctagaattttaatgttgtttagaagtttgatat 1193073  T

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Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 1176683 - 1176737
Alignment:
Q  132 tgtgccttctttgttgcattgtggatgtatatggtttcttagaaattttttactt 186  Q
    |||||||||||| ||||||||||| |||||||||||||| |||| ||||||||||    
T  1176683 tgtgccttctttattgcattgtggttgtatatggtttctaagaatttttttactt 1176737  T

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Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 367
Target Start/End: Original strand, 1182508 - 1182561
Alignment:
Q  314 ttttaggcctaagatttgttattggtagtgctctggtgtgttattaggtgatga 367  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||||| ||||    
T  1182508 ttttaggcctaagatttggtattgttagtgttctggtgtgttattaggtaatga 1182561  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 1237414 - 1237368
Alignment:
Q  239 catattgaatacttaggatat-gttattgcatattgagtacaaatgg 284  Q
    |||||||| |||||||||||| ||||||||||||||||| |||||||    
T  1237414 catattgagtacttaggatattgttattgcatattgagttcaaatgg 1237368  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 10203758 - 10203863
Alignment:
Q  116 ttataaaaaacagtattgtgccttctttgttgcattgtggatgtatatggtttcttagaaattttttacttgctctctaatgagtatgtggttaagaaaa 215  Q
    |||||||| |||| | |||||||||||| || ||| || |||| ||||| ||||| |||| || ||||||||||||||||||||||||||||||| ||||    
T  10203758 ttataaaatacaggaatgtgccttctttttttcatcgtagatgaatatgatttctaagaatttgtttacttgctctctaatgagtatgtggttaaaaaaa 10203857  T
Q  216 tgtgat 221  Q
    ||||||    
T  10203858 tgtgat 10203863  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 367
Target Start/End: Original strand, 12857204 - 12857257
Alignment:
Q  314 ttttaggcctaagatttgttattggtagtgctctggtgtgttattaggtgatga 367  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  12857204 ttttaggcctaagatttgttataggtagtgttctggtgtgttattaggtgatga 12857257  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 10203494 - 10203547
Alignment:
Q  16 caaacaaatattaccttcagtctagaatattaatgatgtttagaagtttgatat 69  Q
    |||||||||||||||||||  ||||||| |||||  ||||||||||||| ||||    
T  10203494 caaacaaatattaccttcaagctagaattttaattttgtttagaagtttaatat 10203547  T

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Target: scaffold0302 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 314 - 367
Target Start/End: Original strand, 19741 - 19794
Alignment:
Q  314 ttttaggcctaagatttgttattggtagtgctctggtgtgttattaggtgatga 367  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||    
T  19741 ttttagacctaagatttgttataggtagtgttctggtgtgttattaggtgatga 19794  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 20257226 - 20257183
Alignment:
Q  314 ttttaggcctaagatttgttattggtagtgctctggtgtgttat 357  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||    
T  20257226 ttttaggcctaagatttgttataggtagtgttctagtgtgttat 20257183  T

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