View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18986_low_12 (Length: 304)
Name: NF18986_low_12
Description: NF18986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18986_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 2034628 - 2034342
Alignment:
| Q |
1 |
ttacgtcatctattgatacttccaactaaaatcttaaaatccaaaccagagattaaagacatcaattcctatcagtttgagggatatagcttacttggaa |
100 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2034628 |
ttacgttatctattgatacttctaactaaaatcttaaaatccaaaccagagattaaagacaccaattcctatcagtttgagggatatagcttacttggaa |
2034529 |
T |
|
| Q |
101 |
ctagtcaaatagtaaagtaagcaataataaaaggcacgcaatacataacacctcaaataagatggattatggaatataacgccggctatatgcttgaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2034528 |
ctagtcaaatagtaaagtaagcaataataaaaggcacgcaatacataacacctcaaataagatggattatggaatataacgccggctatatgcttgaaac |
2034429 |
T |
|
| Q |
201 |
caagttgaaaatgcaagagatttgataaactagtctaactctaaatatacatcaaatggcttaatgtgttctattttattacctttg |
287 |
Q |
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| T |
2034428 |
caagttgaaaatgcaagagatttgataaactagtctaactctaaatatacatcaaatggcttaatgtgttctattttattacctttg |
2034342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 2058651 - 2058618
Alignment:
| Q |
185 |
gctatatgcttgaaaccaagttgaaaatgcaaga |
218 |
Q |
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| T |
2058651 |
gctatatgcttgaaaccaagttaaaaatgcaaga |
2058618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 2051187 - 2051147
Alignment:
| Q |
185 |
gctatatgcttgaaaccaagttgaaaatgcaagagatttga |
225 |
Q |
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| T |
2051187 |
gctatatgcttgaagccaagttgaaaatgcaggagacttga |
2051147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 17183007 - 17183074
Alignment:
| Q |
194 |
ttgaaaccaagttgaaaatgcaagagatttgataaactagtctaactctaaatatacatcaaatggct |
261 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17183007 |
ttgaaaccaagttgaaaatgcaagagatttgattaactagtctaactctaaatatacatcaaatggct |
17183074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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