View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18986_low_15 (Length: 272)
Name: NF18986_low_15
Description: NF18986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18986_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 10793732 - 10793969
Alignment:
| Q |
19 |
aatggtaacaatggatcctctcgtcttaacccacaacccatctcaaattcttctataggactaccgttccttaaggctgagaccgaggcagccttcgaac |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
10793732 |
aatggtgacaatggatcctctcgtcttaacccacaaccgatctcaaattcttctataggactaccgttccttagggctgagaccgaggcagccttcaaac |
10793831 |
T |
|
| Q |
119 |
attctaagatccattccctccatctactatgaaatcccattttctccatgacataatccagatacttccaa-tcaatagattcataagcctttcctcc-g |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10793832 |
attctaagatccattccctccatctaccatgaaatcccattttctccatgacataatccagatacttccaattcaatagattcataagcctttcctccaa |
10793931 |
T |
|
| Q |
217 |
aattcactttaaacatcaccacctcttttttcattctt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10793932 |
aattcactttaaacatcaccacctcttttttcattctt |
10793969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University