View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18986_low_19 (Length: 234)

Name: NF18986_low_19
Description: NF18986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18986_low_19
NF18986_low_19
[»] chr2 (15 HSPs)
chr2 (15-218)||(32534099-32534288)
chr2 (15-218)||(32174106-32174307)
chr2 (59-218)||(32147545-32147702)
chr2 (59-216)||(32156374-32156529)
chr2 (93-218)||(32212188-32212311)
chr2 (69-218)||(32118463-32118611)
chr2 (15-159)||(32182135-32182279)
chr2 (121-218)||(32182298-32182393)
chr2 (37-157)||(2821410-2821529)
chr2 (67-218)||(32152314-32152458)
chr2 (125-216)||(32157550-32157639)
chr2 (149-218)||(32110280-32110347)
chr2 (121-218)||(32153370-32153465)
chr2 (110-218)||(2821309-2821414)
chr2 (107-218)||(32207113-32207222)


Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 32534099 - 32534288
Alignment:
Q  15 caaaggatgagagtatttacttattagcttagcttaatgttttatagtacagaaccaaacatggcctatatattttctctacctaattcaccttcttctt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32534099 caaaggatgagagtatttacttattagcttagcttaatgttttatagtacagaaccaaacatggcctatatattttctctacctaattcaccttcttctt 32534198  T
Q  115 tgatactttcttcattccttacctcttctttgatcattttcttggcttggagagggatttgataaggtcttgtaggcattctgtagcatcaacatccttt 214  Q
    ||||| |||||||||||||||||||||||            ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32534199 tgatattttcttcattccttacctcttct------------ttggcttg--gagggatttgataaggtcttgtaggcattctgtagcatcaacatccttt 32534284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 32174106 - 32174307
Alignment:
Q  15 caaaggatgagagtatttacttattagcttagcttaatgttttatagtacagaaccaaacatggcctatatattttctctacctaattcaccttcttctt 114  Q
    |||||||||||| | | ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  32174106 caaaggatgagaatgtctacttatgagcttagcttaatgttttacagtacagaaccaaacatgacctatatattttctctacctagttcaccttcttctt 32174205  T
Q  115 tgatactttcttcattccttacctcttctttgatcattttcttggcttggagagggatttgataaggtcttgtaggcattctgtagcatcaacatccttt 214  Q
    | ||  ||||||||||  |||||||||| |||||||||||||| |||||  |||| || | ||||||||||||||||||||||||||||||  ||||||     
T  32174206 taatgttttcttcattttttacctcttccttgatcattttctttgcttg--gaggaatattataaggtcttgtaggcattctgtagcatcacaatccttg 32174303  T
Q  215 gtta 218  Q
    ||||    
T  32174304 gtta 32174307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 32147545 - 32147702
Alignment:
Q  59 tagtacagaaccaaacatggcctatatattttctctacctaattcaccttcttctttgatactttcttcattccttacctcttctttgatcattttcttg 158  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| || ||| |||||| |||||||||||||||    
T  32147545 tagtacataaccaaacatggcctatatattttctctacctagttcaccttcttctttgttattttcttcaatctttatctcttccttgatcattttcttg 32147644  T
Q  159 gcttggagagggatttgataaggtcttgtaggcattctgtagcatcaacatcctttgtta 218  Q
    |||||  |||| |||||||||||||||||||||||||||||||||||  |||||||||||    
T  32147645 gcttg--gaggaatttgataaggtcttgtaggcattctgtagcatcacaatcctttgtta 32147702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 59 - 216
Target Start/End: Original strand, 32156374 - 32156529
Alignment:
Q  59 tagtacagaaccaaacatggcctatatattttctctacctaattcaccttcttctttgatactttcttcattccttacctcttctttgatcattttcttg 158  Q
    ||||||| ||||||||||||||||||||||||| || |||| ||||  ||||||||||| | ||||||| ||| ||| |||||| ||  ||||||||||     
T  32156374 tagtacataaccaaacatggcctatatattttcactccctagttcagattcttctttgacattttcttccttctttatctcttcctttttcattttcttt 32156473  T
Q  159 gcttggagagggatttgataaggtcttgtaggcattctgtagcatcaacatcctttgt 216  Q
     |||||||  | ||||||||||||||||||||||||||||||||||||||||||||||    
T  32156474 acttggag--gaatttgataaggtcttgtaggcattctgtagcatcaacatcctttgt 32156529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 32212311 - 32212188
Alignment:
Q  93 ctacctaattcaccttcttctttgatactttcttcattccttacctcttctttgatcattttcttggcttggagagggatttgataaggtcttgtaggca 192  Q
    ||||||| ||||  ||||||||||||| ||||||||||  ||| |||||| || || |||||||||||||||||  ||||||||||||||||||||||||    
T  32212311 ctacctagttcatgttcttctttgatattttcttcattttttatctcttccttcatgattttcttggcttggag--ggatttgataaggtcttgtaggca 32212214  T
Q  193 ttctgtagcatcaacatcctttgtta 218  Q
    ||||||||||||||||||||||||||    
T  32212213 ttctgtagcatcaacatcctttgtta 32212188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 69 - 218
Target Start/End: Original strand, 32118463 - 32118611
Alignment:
Q  69 ccaaacatggcctatatattttctctacctaattcaccttcttctttgatactttcttcattc-cttacctcttctttgatcattttcttggcttggaga 167  Q
    ||||||||| ||||||||||||||||| ||| ||||  ||||||||||||| |||||||||||  | | |||||| ||||||||||||||||||||  ||    
T  32118463 ccaaacatgacctatatattttctctatctagttcatgttcttctttgatattttcttcattctatcatctcttccttgatcattttcttggcttg--ga 32118560  T
Q  168 gggatttgataaggtcttgtaggcattctgtagcatcaacatcctttgtta 218  Q
    ||||||  ||||||||||||||||||||||||||||||  |||||| ||||    
T  32118561 gggattcaataaggtcttgtaggcattctgtagcatcacaatccttcgtta 32118611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 32182135 - 32182279
Alignment:
Q  15 caaaggatgagagtatttacttattagcttagcttaatgttttatagtacagaaccaaacatggcctatatattttctctacctaattcaccttcttctt 114  Q
    |||||||||||| |   ||||||| || ||||||||||||||||  ||||| ||||||||||  ||||||||||||| ||||||| ||||||||||||||    
T  32182135 caaaggatgagaatgactacttatgagtttagcttaatgttttacggtacataaccaaacataacctatatattttcactacctagttcaccttcttctt 32182234  T
Q  115 tgatactttcttcattccttacctcttctttgatcattttcttgg 159  Q
    ||||| ||||||||||| ||  |||||| | ||||||||||||||    
T  32182235 tgatattttcttcattctttgtctcttcctcgatcattttcttgg 32182279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 32182298 - 32182393
Alignment:
Q  121 tttcttcattccttacctcttctttgatcattttcttggcttggagagggatttgataaggtcttgtaggcattctgtagcatcaacatcctttgtta 218  Q
    ||||||||||| |||||||||| |||||||||||||||||||| ||  | |||||||||||||||||||||||||||||||||||  |||||||||||    
T  32182298 tttcttcattctttacctcttccttgatcattttcttggcttgcag--gaatttgataaggtcttgtaggcattctgtagcatcacaatcctttgtta 32182393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 37 - 157
Target Start/End: Complemental strand, 2821529 - 2821410
Alignment:
Q  37 attagcttagcttaatgttttatagtacagaaccaaacatggcctatatattttctctacctaattcaccttcttctttgatactttcttcattccttac 136  Q
    |||||||||||||| | |||  ||||||| ||||||||||||||||||||||||||||||||| ||||  |||||||| |||| ||||||||||| |||     
T  2821529 attagcttagcttattatttc-tagtacataaccaaacatggcctatatattttctctacctagttcagattcttcttggatattttcttcattctttat 2821431  T
Q  137 ctcttctttgatcattttctt 157  Q
    ||| || | ||||||||||||    
T  2821430 ctcatcctcgatcattttctt 2821410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 32152314 - 32152458
Alignment:
Q  67 aaccaaacatggcctatatattttctctacctaattcaccttcttctttgatactttcttcattccttacctcttctttgatcattttcttggcttggag 166  Q
    |||||||||| ||||||||||||||||||| || ||||  |||| |||||||| ||||||||||  | |  ||||| ||||||||||||||||||||  |    
T  32152314 aaccaaacatagcctatatattttctctacatagttcatgttctcctttgataatttcttcatttttaatgtcttccttgatcattttcttggcttg--g 32152411  T
Q  167 agggatttgataaggtcttgtaggcattctgtagcatcaacatcctttgtta 218  Q
    | ||||||     ||||||||||||||||||||||||||  |||||||||||    
T  32152412 aaggattt-----ggtcttgtaggcattctgtagcatcacaatcctttgtta 32152458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 32157550 - 32157639
Alignment:
Q  125 ttcattccttacctcttctttgatcattttcttggcttggagagggatttgataaggtcttgtaggcattctgtagcatcaacatcctttgt 216  Q
    ||||||||| | |||||| |||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||  |||||||||    
T  32157550 ttcattcctaatctcttccttgatcattttcttggcttggag--gaatttgataaggtcttgtaggcattctgtagcatcacaatcctttgt 32157639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 32110280 - 32110347
Alignment:
Q  149 cattttcttggcttggagagggatttgataaggtcttgtaggcattctgtagcatcaacatcctttgtta 218  Q
    ||||||||||||||||||  | |||||||||||||||||| |||||||||||||||||||||||||||||    
T  32110280 cattttcttggcttggag--gaatttgataaggtcttgtaagcattctgtagcatcaacatcctttgtta 32110347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 32153370 - 32153465
Alignment:
Q  121 tttcttcattccttacctcttctttgatcattttcttggcttggagagggatttgataaggtcttgtaggcattctgtagcatcaacatcctttgtta 218  Q
    ||||||||||| ||| ||| | |||||| |||||||||||||||||  | |||||||||||| |||||||||||||| ||||||||| ||||||||||    
T  32153370 tttcttcattctttatctcatgtttgatgattttcttggcttggag--gaatttgataaggtattgtaggcattctgcagcatcaacctcctttgtta 32153465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 2821414 - 2821309
Alignment:
Q  110 ttctttgatactttcttcattccttacctcttctttgatcattttcttggcttggagagggatttgataaggtcttgtaggcattctgtagcatcaacat 209  Q
    |||||||||  ||||||||||| ||| |||||| || ||| ||| ||||||||||||  | |||||||||||||||||||||||| ||||||||||  ||    
T  2821414 ttctttgatgttttcttcattctttatctcttccttcatcgttt-cttggcttggag--gaatttgataaggtcttgtaggcattttgtagcatcacaat 2821318  T
Q  210 cctttgtta 218  Q
    |||||||||    
T  2821317 cctttgtta 2821309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 32207222 - 32207113
Alignment:
Q  107 ttcttctttgatactttcttcattccttacctcttctttgatcattttcttggcttggagagggatttgataaggtcttgtaggcattctgtagcatcaa 206  Q
    ||||||||||| | ||||||||||  | |  ||||| |||||||||||||||||||||||  ||||||||||||||||| ||| |||||||| ||||||     
T  32207222 ttcttctttgacattttcttcattattaatgtcttccttgatcattttcttggcttggag--ggatttgataaggtcttctagacattctgttgcatcac 32207125  T
Q  207 catcctttgtta 218  Q
      ||||||||||    
T  32207124 agtcctttgtta 32207113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University