View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18986_low_2 (Length: 663)
Name: NF18986_low_2
Description: NF18986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18986_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 37 - 648
Target Start/End: Original strand, 2055599 - 2056205
Alignment:
| Q |
37 |
gatggtatctgattaagaaacacaataattgttgtatctcttcaaaagaatcaaaacaagtaaagtaaaagttacaaatgtctttgatatgtaacatttt |
136 |
Q |
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| T |
2055599 |
gatggtatct-attaagaaacacaataattgttgtatatcttcaaaagaatcaaaacaagtaaagtaaaagttacaaatgcctttgatatgtaacatttt |
2055697 |
T |
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| Q |
137 |
ttgttttccatctaaaaatttgatttcattaattaattaaatgtgctttggacatgctgcattttggctcttgaattggatagaacacatattattagac |
236 |
Q |
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| T |
2055698 |
ttgttttccatctaaaaatttgatttcattaattaattcaatgtgctttggacatgctgcatttttgctcttgaattggatagaacacatattattagac |
2055797 |
T |
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| Q |
237 |
tatcataaaaatatttgtaccacaaagaataaaaacaaagtgacaatcattacaacaaacatataagggaaattatacagtatatgaagatatatattag |
336 |
Q |
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| T |
2055798 |
tatcataaaaagatttgtaccacaaagaatagaaacaaagtgacaatcattacaacaaacatataagggaaattatatagtatatgaagatatatattag |
2055897 |
T |
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| Q |
337 |
caagtttacattaaatccaagcaagatttttcataaattagtgatgcaaactgtataaaatccaggatgtgctaacttggcttgatatgttacttcttcc |
436 |
Q |
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| T |
2055898 |
caagtttacattaaatcaaagcaagatttttcataaattagtgatgcaaactgtataaaatccaggatgtgctaacttggcttgatatgttacttcttcc |
2055997 |
T |
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| Q |
437 |
attgaggaatcctttgaacaacaacctaaaagccatcatagaaaatataatatatgaatccactagaactattgtacttatgaaaaacagtctttataat |
536 |
Q |
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| T |
2055998 |
attgaggaatcctttgaacaacaacctaaaagccatcatagaaaatataatatatgaatccattagaactattgtacttatgaaaaacagtcttgataat |
2056097 |
T |
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| Q |
537 |
tttagaataaatcattagnnnnnnnnnnnnnnngaagataatcatacaggttgaagaagattccctagtcactatttcgtttgcattaggtaaaaaagac |
636 |
Q |
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| T |
2056098 |
tttagaataaatcattag----ttttttcttttgaagataaccatacaggtttaaaaagattccctagtcactatttcttttgcattaggtaaaaaagac |
2056193 |
T |
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| Q |
637 |
aagcatgttcat |
648 |
Q |
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| T |
2056194 |
aagcatgttcat |
2056205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 390 - 511
Target Start/End: Original strand, 44379596 - 44379717
Alignment:
| Q |
390 |
tataaaatccaggatgtgctaacttggcttgatatgttacttcttccattgaggaatcctttgaacaacaacctaaaag-ccatcatagaaaatataata |
488 |
Q |
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| T |
44379596 |
tatagaatccaggatgtgcta-cttggcttggtatgttatttcttccattgaggaatcctttgaacgacaatctaaatgcccatcatagaaaatataata |
44379694 |
T |
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| Q |
489 |
tatgaatccactagaactattgt |
511 |
Q |
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| T |
44379695 |
tgtgaatcaaatagaactattgt |
44379717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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