View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18986_low_3 (Length: 558)
Name: NF18986_low_3
Description: NF18986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18986_low_3 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 20 - 551
Target Start/End: Original strand, 8360431 - 8360955
Alignment:
| Q |
20 |
ctttacatattacttgttgcaaccggtcatcctcaatttagttaaagagtttaatttaattagccttgagtgtgtcctccctctccatcactaagctcaa |
119 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
8360431 |
ctttacatattacttgctgcaaccgatcatcctcaatttagttaaacagtttaatttaattagccttgagtgtgtcctc----tccatcactaagctcaa |
8360526 |
T |
|
| Q |
120 |
ttctttctttcactgcacgaactctcaccctccttcaagcaccaaccggcgtgaagcaatatgctgcataatcacttgaaatttgagaagcttatggatg |
219 |
Q |
| |
|
|| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8360527 |
ttatttctttcactgcacgaactcccacccttcttcaagcaccaaccggcgtgaagcaatatgctgcataatcacttgaaatttgagaagcttatggatg |
8360626 |
T |
|
| Q |
220 |
taaaaagagaagaagcccttgatagtgatacaatgacttaaccaccaaacttagagactttgggttcctannnnnnnnnnnnaattcttcatgggaatcg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
8360627 |
taaaaagagaagaagcccttgatagtgatacaatgacttaaccaccaaacttagagactttgggttacta--ttttttttttaattcttcatgggaatcg |
8360724 |
T |
|
| Q |
320 |
atttttattatctaaatgggattaataaaaataaaatatatgaagtattgtttgctttttgtttctgtcaagcagccagccaagagattacacaaggcaa |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8360725 |
atttttattatctaaatgggattaataaaaataaactatctaaagtattgtttgctttttgtttctgtcaagcagccagccaagagattacacaaggcaa |
8360824 |
T |
|
| Q |
420 |
aagtaaaaaattaagccaacatatatgaattgaatgttacgtactttccgtaaaacaattttgagcaactagacattgaacaagaagaaaataaatgaaa |
519 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
8360825 |
aagtaaaaaattaggtcaacatatatgaattgaatgttacgtacttttcgtaaaacaattttgagcaactagacattgaacaagaag-aaataaatgaaa |
8360923 |
T |
|
| Q |
520 |
ggctcaaaacgaaatagtgatgatgatgtcca |
551 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
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|
| T |
8360924 |
ggctcaaaacgaaatagtgatgatgaagtcca |
8360955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 206 - 551
Target Start/End: Original strand, 38412275 - 38412624
Alignment:
| Q |
206 |
gaagcttatggatgtaaaaagagaagaagcccttgatagtgatacaatgacttaaccaccaaacttagagactttgggttcctannnnnnnnnnnn---- |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
38412275 |
gaagcttatggatgtaaaaagagaagaagcccttgatagtgatacaatgacttaaccaccaaacttagagactttgggttactattttatttttattttt |
38412374 |
T |
|
| Q |
302 |
aattcttcatgggaatcgatttttattatctaaatgggattaataaaaataaaatatatgaagtattgtttgctttttgtttctgtcaagcagccagcca |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38412375 |
aattcttcatgggaatcgatttttattatctaaatgggattaataaaaataaaatatctgaagtattgtttgctttttgtttctgtcaagcagccagcca |
38412474 |
T |
|
| Q |
402 |
agagattacacaaggcaaaagtaaaaaattaagccaacatatatgaattgaatgttacgtactttccgtaaaacaattttgagcaactagacattgaaca |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
38412475 |
agagattacacaaggcaaaagtaaaaaattaagccaacatatatgaattgaatgttatgtacttttcgtaaaacaattttgagcaactagacattgaaca |
38412574 |
T |
|
| Q |
502 |
agaagaaaataaatgaaaggctcaaaacgaaatagtgatgatgatgtcca |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
38412575 |
agaagaaaataaatgaaaggctcaaaacgaaatagtgatgatgaagtcca |
38412624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 38412127 - 38412279
Alignment:
| Q |
20 |
ctttacatattacttgttgcaaccggtcatcctcaatttagttaaagagtttaatttaattagccttgagtgtgtcctccctctccatcactaagctcaa |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
38412127 |
ctttacatattacttgctgcaaccggtcatcctcaatttagttaaatagtttaatttaattagccttgagtgtgtcctc----tccatcactaagctcaa |
38412222 |
T |
|
| Q |
120 |
ttctttctttcactgcacgaactctcaccctccttcaagcaccaaccggcgtgaagc |
176 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38412223 |
ttctttctttcactgcacgaactctcaccttccttcaagcaccaaccggcgtgaagc |
38412279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 206 - 551
Target Start/End: Complemental strand, 34612371 - 34612022
Alignment:
| Q |
206 |
gaagcttatggatgtaaaaagagaagaagcccttgatagtgatacaatgacttaaccaccaaacttagagactttgggttcctannnnnnnnnnnn---- |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34612371 |
gaagcttatggatgtaaaaagagaagaagcccttgatagtgatacaatgacttaaccaccaaacttagagactttgggttactattttatttttattttt |
34612272 |
T |
|
| Q |
302 |
aattcttcatgggaatcgatttttattatctaaatgggattaataaaaataaaatatatgaagtattgtttgctttttgtttctgtcaagcagccagcca |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34612271 |
aattcttcatgggaatcgatttttattatctaaatgggattaataaaaataaaatatctgaagtattgtttgctttttgtttctgtcaagcagccagcca |
34612172 |
T |
|
| Q |
402 |
agagattacacaaggcaaaagtaaaaaattaagccaacatatatgaattgaatgttacgtactttccgtaaaacaattttgagcaactagacattgaaca |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34612171 |
agagattacacaaggcaaaagtaaaaaattaagccaacatatatgaattgaatgttatgtacttttcgtaaaacaattttgagcaactagacattgaaca |
34612072 |
T |
|
| Q |
502 |
agaagaaaataaatgaaaggctcaaaacgaaatagtgatgatgatgtcca |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34612071 |
agaagaaaataaatgaaaggctcaaaacgaaatagtgatgatgaagtcca |
34612022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 34612519 - 34612367
Alignment:
| Q |
20 |
ctttacatattacttgttgcaaccggtcatcctcaatttagttaaagagtttaatttaattagccttgagtgtgtcctccctctccatcactaagctcaa |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34612519 |
ctttacatattacttgctgcaaccggtcatcctcaatttagttaaatagtttaatttaattagccttgagtgtgtcctc----tccatcactaagctcaa |
34612424 |
T |
|
| Q |
120 |
ttctttctttcactgcacgaactctcaccctccttcaagcaccaaccggcgtgaagc |
176 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34612423 |
ttctttctttcactgcacgaactctcaccttccttcaagcaccaaccggcgtgaagc |
34612367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 206 - 551
Target Start/End: Original strand, 26908592 - 26908941
Alignment:
| Q |
206 |
gaagcttatggatgtaaaaagagaagaagcccttgatagtgatacaatgacttaaccaccaaacttagagactttgggttcctannnnnnnnnnnn---- |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26908592 |
gaagcttatggatgtaaaaagagaagaagcccttgatagtgatacaatgacttaaccaccaaacttagagactttgggttactattttatttttattttt |
26908691 |
T |
|
| Q |
302 |
aattcttcatgggaatcgatttttattatctaaatgggattaataaaaataaaatatatgaagtattgtttgctttttgtttctgtcaagcagccagcca |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26908692 |
aattcttcatgggaatcgatttttattatctaaatgggattaataaaaataaaatatctgaagtattgtttgctttttgtttctgtcaagcagccagcca |
26908791 |
T |
|
| Q |
402 |
agagattacacaaggcaaaagtaaaaaattaagccaacatatatgaattgaatgttacgtactttccgtaaaacaattttgagcaactagacattgaaca |
501 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26908792 |
agagattacacaaggcaatagtaaaaaattaagccaacatatatgaattgaatgttatgtacttttcgtaaaacaattttgagcaactagacattgaaca |
26908891 |
T |
|
| Q |
502 |
agaagaaaataaatgaaaggctcaaaacgaaatagtgatgatgatgtcca |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26908892 |
agaagaaaataaatgaaaggctcaaaacgaaatagtgatgatgaagtcca |
26908941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 26908444 - 26908596
Alignment:
| Q |
20 |
ctttacatattacttgttgcaaccggtcatcctcaatttagttaaagagtttaatttaattagccttgagtgtgtcctccctctccatcactaagctcaa |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26908444 |
ctttacatattacttgctgcaaccggtcatcctcaatttagttaaatagtttaatttaattagccttgagtgtgtcctc----tccatcactaagctcaa |
26908539 |
T |
|
| Q |
120 |
ttctttctttcactgcacgaactctcaccctccttcaagcaccaaccggcgtgaagc |
176 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26908540 |
ttctttctttcactgcacgaactctcaccttccttcaagcaccaaccggcgtgaagc |
26908596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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