View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18986_low_4 (Length: 553)

Name: NF18986_low_4
Description: NF18986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18986_low_4
NF18986_low_4
[»] chr2 (14 HSPs)
chr2 (1-391)||(35681646-35682036)
chr2 (160-386)||(31635882-31636112)
chr2 (1-168)||(31635535-31635698)
chr2 (253-375)||(22011076-22011198)
chr2 (304-386)||(27952637-27952719)
chr2 (275-363)||(280297-280385)
chr2 (321-391)||(2165636-2165706)
chr2 (265-382)||(33053125-33053241)
chr2 (265-386)||(36648579-36648700)
chr2 (265-389)||(32162225-32162347)
chr2 (254-347)||(18945646-18945739)
chr2 (313-387)||(23457389-23457462)
chr2 (497-542)||(35682142-35682187)
chr2 (310-386)||(36614845-36614921)
[»] chr7 (8 HSPs)
chr7 (1-386)||(4302848-4303234)
chr7 (270-382)||(11001090-11001202)
chr7 (265-385)||(1217473-1217591)
chr7 (274-365)||(1369529-1369620)
chr7 (267-382)||(8915437-8915551)
chr7 (309-385)||(1786424-1786500)
chr7 (265-386)||(13882995-13883117)
chr7 (269-391)||(11228430-11228551)
[»] chr8 (9 HSPs)
chr8 (16-266)||(37192758-37193008)
chr8 (265-391)||(23573240-23573365)
chr8 (321-391)||(22922157-22922227)
chr8 (313-386)||(26377776-26377849)
chr8 (311-386)||(22512360-22512435)
chr8 (247-389)||(2688855-2688999)
chr8 (322-386)||(2188719-2188783)
chr8 (267-363)||(24577813-24577909)
chr8 (335-378)||(37193064-37193107)
[»] chr5 (5 HSPs)
chr5 (253-391)||(21845197-21845335)
chr5 (265-382)||(18252124-18252241)
chr5 (321-363)||(19677630-19677672)
chr5 (357-391)||(21849278-21849312)
chr5 (357-391)||(21857192-21857226)
[»] chr1 (8 HSPs)
chr1 (270-390)||(10926905-10927026)
chr1 (268-391)||(10927811-10927934)
chr1 (270-386)||(13441901-13442015)
chr1 (265-391)||(23988929-23989055)
chr1 (304-376)||(8966022-8966094)
chr1 (264-386)||(31915240-31915365)
chr1 (273-387)||(40805571-40805685)
chr1 (311-374)||(31522584-31522647)
[»] chr6 (15 HSPs)
chr6 (265-391)||(18203141-18203265)
chr6 (265-389)||(12881729-12881852)
chr6 (269-386)||(22888963-22889080)
chr6 (266-382)||(34374051-34374167)
chr6 (321-391)||(30049629-30049699)
chr6 (321-391)||(30051916-30051986)
chr6 (269-386)||(22873520-22873637)
chr6 (269-386)||(22910506-22910623)
chr6 (321-388)||(3541959-3542026)
chr6 (269-391)||(12778664-12778784)
chr6 (341-386)||(11194398-11194443)
chr6 (309-365)||(8047661-8047717)
chr6 (355-391)||(18726879-18726915)
chr6 (311-375)||(32361109-32361173)
chr6 (322-360)||(18720031-18720069)
[»] chr4 (7 HSPs)
chr4 (265-391)||(22716318-22716444)
chr4 (265-391)||(22988773-22988899)
chr4 (265-389)||(10494628-10494752)
chr4 (269-363)||(7634998-7635092)
chr4 (321-391)||(13085398-13085471)
chr4 (330-388)||(6659640-6659697)
chr4 (309-371)||(9260313-9260375)
[»] chr3 (6 HSPs)
chr3 (265-386)||(365863-365983)
chr3 (316-386)||(3064051-3064121)
chr3 (265-374)||(8536655-8536764)
chr3 (310-386)||(2472969-2473045)
chr3 (350-386)||(43304270-43304306)
chr3 (323-368)||(24516698-24516743)
[»] scaffold0110 (1 HSPs)
scaffold0110 (321-391)||(45923-45993)
[»] scaffold0054 (3 HSPs)
scaffold0054 (269-386)||(10359-10476)
scaffold0054 (265-374)||(49018-49127)
scaffold0054 (330-369)||(37484-37523)
[»] scaffold0024 (2 HSPs)
scaffold0024 (269-382)||(145442-145555)
scaffold0024 (269-373)||(144177-144284)


Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 35681646 - 35682036
Alignment:
Q  1 ccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttactgtgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35681646 ccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttactgtgt 35681745  T
Q  101 tggtttcattcattcttacacttcaagtacaaaatgatcaggcatcacttaatagtactctaacttatacagaattatcaagtgagtctgctattgttgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35681746 tggtttcattcattcttacacttcaagtacaaaatgatcaggcatcacttaacagtactctaacttatacagaattatcaagtgagtctgctattgttgg 35681845  T
Q  201 taccatgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatgggatccaggtggtctcttgttcattgaaggagtcaacatgcat 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35681846 taccttgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatgggatccaggtggtctcttgttcattgaaggagtcaacatgcat 35681945  T
Q  301 agaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 391  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35681946 agaaagctctttatcagaaagagaacttggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 35682036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 160 - 386
Target Start/End: Original strand, 31635882 - 31636112
Alignment:
Q  160 ctaacttatacagaattatcaagtgagtctgctattgttggtaccatgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatggg 259  Q
    |||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||||||||| ||||  |||   |||||||||||||    
T  31635882 ctaacttatatagaattatcaagtgagtctgctattgttggtacattgcacagtggctgctctgtccataaaaacggaccttcagagttcaaccaatggg 31635981  T
Q  260 atccaggtggt----ctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggagga 355  Q
    |||| |||||     ||||||||||||| |||||||||||||||| | || | |||||||  || ||||||||||  |||||||||||||||||||||||    
T  31635982 atccgggtgggtgtgctcttgttcattggaggagtcaacatgcatgggaaactctttatctaaatgagaactcggattcgagttcttcagaggtggagga 31636081  T
Q  356 gactgatgcaggagggttttcttagtaattt 386  Q
    |||||||| ||||||||||| ||||||||||    
T  31636082 gactgatgtaggagggttttattagtaattt 31636112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 31635535 - 31635698
Alignment:
Q  1 ccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttactgtgt 100  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||| || |||||    
T  31635535 ccatttggtgttctgc---atgttattaaacctttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcta-tgtgt 31635630  T
Q  101 tggtttcattcattcttacacttcaagtacaaaatgatcaggcatcacttaatagtactctaacttat 168  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||  || |||||||||||    
T  31635631 tggtttcatttattcttatacttcaagtacaaaatgatcaggcatcacttaacggtgctctaacttat 31635698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 253 - 375
Target Start/End: Original strand, 22011076 - 22011198
Alignment:
Q  253 caatgggatccaggtggtctcttgttcattgaaggagtcaacatgcat-agaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtgg 351  Q
    ||||||||||| |||||| |||||||||| |||||||||||||| ||| |||||   |||||| |||| |||||||| ||||||||||||| ||||||||    
T  22011076 caatgggatccgggtggtatcttgttcatcgaaggagtcaacatacatgagaaatt-ctttattagaatgagaactcagggtcgagttctttagaggtgg 22011174  T
Q  352 aggagactgatgcaggagggtttt 375  Q
    |||||| |||||||||||||||||    
T  22011175 aggagagtgatgcaggagggtttt 22011198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 304 - 386
Target Start/End: Complemental strand, 27952719 - 27952637
Alignment:
Q  304 aagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 386  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||    
T  27952719 aagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggttttattaataattt 27952637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 275 - 363
Target Start/End: Complemental strand, 280385 - 280297
Alignment:
Q  275 tgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 363  Q
    ||||||||| |||| |||||||||||   |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  280385 tgttcattggaggattcaacatgcatgtgaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatg 280297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 321 - 391
Target Start/End: Original strand, 2165636 - 2165706
Alignment:
Q  321 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 391  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  2165636 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagagtttccttagtaattttatag 2165706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 382
Target Start/End: Original strand, 33053125 - 33053241
Alignment:
Q  265 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 364  Q
    |||||||||||||| |||  ||||||| ||||| ||   |||| |||||| ||||  ||||| ||||||||||||||||||||||||||||||||||||     
T  33053125 ggtggtctcttgtttattagaggagtcgacatgaatgagaagctctttattagaataagaac-cggggtcgagttcttcagaggtggaggagactgatgt 33053223  T
Q  365 aggagggttttcttagta 382  Q
    || ||||||| |||||||    
T  33053224 agaagggtttccttagta 33053241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 386
Target Start/End: Original strand, 36648579 - 36648700
Alignment:
Q  265 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgcttt-atcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 363  Q
    ||||||||||| ||||||| | |||||| ||||||| ||| || |||| |||||||  |||||| || ||||||||||||| || ||||||||||| |||    
T  36648579 ggtggtctcttattcattggaagagtcatcatgcatggaa-gcacttttatcagaacaagaactgggagtcgagttcttcatagatggaggagactcatg 36648677  T
Q  364 caggagggttttcttagtaattt 386  Q
     |||||||||| |||||||||||    
T  36648678 taggagggtttccttagtaattt 36648700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 389
Target Start/End: Complemental strand, 32162347 - 32162225
Alignment:
Q  265 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 364  Q
    ||||||||||||||||||  || ||||||||||||| | |||| ||||||||||| ||||||||  ||| ||||| ||||||| ||||||||||| |||     
T  32162347 ggtggtctcttgttcattagag-agtcaacatgcatgggaagctctttatcagaatgagaactcaaggttgagtttttcagagatggaggagactaatgt 32162249  T
Q  365 aggagggttttcttagtaattttat 389  Q
    | |||| ||| ||||| ||||||||    
T  32162248 aagaggatttccttag-aattttat 32162225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 254 - 347
Target Start/End: Original strand, 18945646 - 18945739
Alignment:
Q  254 aatgggatccaggtggtctcttgttcattgaaggagtcaacatgcat-agaaagcgctttatcagaaagagaactcggggtcgagttcttcagag 347  Q
    |||||||||||||||||||||||||||||| |||||| |||||| || ||||| | ||| ||||||| ||||| ||||| ||||||| |||||||    
T  18945646 aatgggatccaggtggtctcttgttcattgcaggagttaacatgaatgagaaa-ctcttaatcagaatgagaattcgggatcgagtttttcagag 18945739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 23457389 - 23457462
Alignment:
Q  313 atcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttt 387  Q
    ||||||| |||||||||||   |||||||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  23457389 atcagaatgagaactcgggtcagagttcttcagaggtggaggcgactgatgtagga-ggttttcttagtaatttt 23457462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 497 - 542
Target Start/End: Original strand, 35682142 - 35682187
Alignment:
Q  497 agaacattatagtatttatttcagttggagcctcagtttcattcat 542  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  35682142 agaacattatagtatttatttcagtttgagcctcagtttcattcat 35682187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 386
Target Start/End: Original strand, 36614845 - 36614921
Alignment:
Q  310 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 386  Q
    ||||||||||  | ||||||| ||||||||||||| || ||||||||||| | | |||||||||| |||||||||||    
T  36614845 tttatcagaacaaaaactcggagtcgagttcttcatagatggaggagactcacgtaggagggtttccttagtaattt 36614921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 4302848 - 4303234
Alignment:
Q  1 ccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttactgtgt 100  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||  |||||||    
T  4302848 ccatttggtgttctgc---atgttattaaacctttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcaactgtgt 4302944  T
Q  101 tggtttcattcattcttacacttcaagtacaaaatgatcaggcatcacttaatagtactctaacttatacagaattatcaagtgagtctgctattgttgg 200  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||    
T  4302945 tggtttcattcattcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatagaattatcaagtgattctgctattgttgg 4303044  T
Q  201 taccatgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatgggatccaggtggt----ctcttgttcattgaaggagtcaacat 296  Q
    |||  ||| ||||| | ||| |||||||||||| ||||  ||||  ||||||||||||||||| |||||     ||||||||||||| ||||||| ||||    
T  4303045 tacattgcacagtgacagctctgtccataaaaacggaccttcacagttcaaccaatgggatccgggtgggtgtgctcttgttcattggaggagtcgacat 4303144  T
Q  297 gcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 386  Q
    |||| | |||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  4303145 gcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagggttttattagtaattt 4303234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 270 - 382
Target Start/End: Complemental strand, 11001202 - 11001090
Alignment:
Q  270 tctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggag 369  Q
    |||||| ||||||| |||||| ||||||||| | |||| |||||||| || ||||| | ||||||||||||||||||||||||||||||||||| |||||    
T  11001202 tctctttttcattggaggagttaacatgcatgggaagctctttatcacaatgagaatttggggtcgagttcttcagaggtggaggagactgatgtaggag 11001103  T
Q  370 ggttttcttagta 382  Q
    ||||| |||||||    
T  11001102 ggtttccttagta 11001090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 265 - 385
Target Start/End: Complemental strand, 1217591 - 1217473
Alignment:
Q  265 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 364  Q
    |||||||||||||| |||| ||||  | |||||||| |||| | |||||||| || | ||||||||| |||||||||||| |||||||||||||||||||    
T  1217591 ggtggtctcttgttaattggaggacacgacatgcat-gaaatctctttatcaaaacgtgaactcggg-tcgagttcttcaaaggtggaggagactgatgc 1217494  T
Q  365 aggagggttttcttagtaatt 385  Q
    ||||||||||| |||||||||    
T  1217493 aggagggttttattagtaatt 1217473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 274 - 365
Target Start/End: Original strand, 1369529 - 1369620
Alignment:
Q  274 ttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgca 365  Q
    |||||||||| |||||||||||| ||| | |||| |||||||||||  |||||||||| ||||||||||||||||||||||||||| |||||    
T  1369529 ttgttcattggaggagtcaacattcatgggaagctctttatcagaataagaactcgggctcgagttcttcagaggtggaggagactcatgca 1369620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 267 - 382
Target Start/End: Complemental strand, 8915551 - 8915437
Alignment:
Q  267 tggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcag 366  Q
    ||||||||||||||| | |||||||||||||||| | | ||  ||||| |||| ||||| |||||||| |||||||||||| ||||||||||||||| ||    
T  8915551 tggtctcttgttcatcggaggagtcaacatgcatggga-gctttttattagaatgagaattcggggtctagttcttcagagatggaggagactgatgtag 8915453  T
Q  367 gagggttttcttagta 382  Q
    |||||||| |||||||    
T  8915452 gagggtttccttagta 8915437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 309 - 385
Target Start/End: Original strand, 1786424 - 1786500
Alignment:
Q  309 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatt 385  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  1786424 ctttatcaaaatgagaactcgaggtcgagttcttcagaggtggaggagactcatgtaggaaggttttcttagtaatt 1786500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 265 - 386
Target Start/End: Complemental strand, 13883117 - 13882995
Alignment:
Q  265 ggtggtctcttgttcattgaaggagtcaacat--gcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgat 362  Q
    |||||||||||||| |||| ||||| ||||||  ||||   || | |||||| |||| ||||||||||| |||||||||| ||||||||| |||||||||    
T  13883117 ggtggtctcttgtttattggaggagccaacatatgcatgagaatctctttattagaatgagaactcggg-tcgagttctttagaggtggacgagactgat 13883019  T
Q  363 gcaggagggttttcttagtaattt 386  Q
    ||||||||||||| ||||||||||    
T  13883018 gcaggagggttttattagtaattt 13882995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 391
Target Start/End: Original strand, 11228430 - 11228551
Alignment:
Q  269 gtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcagga 368  Q
    ||||||||||||||  |||||||| ||||||| | |||  |||||| |||| |||||||||||| | ||||||| ||||| |||| ||||||||| ||||    
T  11228430 gtctcttgttcattataggagtcatcatgcatgggaagttctttattagaatgagaactcgggggcaagttcttaagagg-ggagaagactgatgtagga 11228528  T
Q  369 gggttttcttagtaattttatag 391  Q
     ||||| | ||||||||||||||    
T  11228529 tggtttccatagtaattttatag 11228551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 37192758 - 37193008
Alignment:
Q  16 ctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttactgtgttggtttcattcattc 115  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| |  ||||||||||||||||||||||||    
T  37192758 ctgcatgttattaaacctttacttggacttcatgaaaaaggatattggttattctctcaaataaaaagggatccacttactgtgttggtttcattcattc 37192857  T
Q  116 ttacacttcaagtacaaaatgatcaggcatcacttaatagtactctaacttatacagaattatcaagtgagtctgctattgttggtaccatgctcagtgg 215  Q
     || ||||||||||||| ||| ||||||||||||||| | | ||||| ||| || |||||||||||||| |||||| |||||||||||  ||||||||||    
T  37192858 ctatacttcaagtacaacatggtcaggcatcacttaacaatgctctagcttgtatagaattatcaagtgcgtctgcaattgttggtacattgctcagtgg 37192957  T
Q  216 ctgctttgtccataaaaagggacgctcacgattcaaccaatgggatccagg 266  Q
    ||||||||||||||||||||||| |||||  ||||  ||||||||||||||    
T  37192958 ctgctttgtccataaaaagggaccctcacagttcactcaatgggatccagg 37193008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 265 - 391
Target Start/End: Original strand, 23573240 - 23573365
Alignment:
Q  265 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 364  Q
    |||||||| |||||||||| |||||||||||||||| | |||| |||||||| || || ||||| |||||||||||||||||||||||||||||| |||     
T  23573240 ggtggtcttttgttcattggaggagtcaacatgcatgggaagctctttatcaaaatgaaaactccgggtcgagttcttcagaggtggaggagactaatgt 23573339  T
Q  365 aggagggttttcttagtaattttatag 391  Q
    || |||| |||||||||||||||||||    
T  23573340 agaaggg-tttcttagtaattttatag 23573365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 321 - 391
Target Start/End: Complemental strand, 22922227 - 22922157
Alignment:
Q  321 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 391  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  22922227 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 22922157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 313 - 386
Target Start/End: Original strand, 26377776 - 26377849
Alignment:
Q  313 atcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 386  Q
    ||||||| ||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  26377776 atcagaatgagaacttggggtcgagttcttcaaaggtggaggagactgatgtaggagggttttcttagtaattt 26377849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 311 - 386
Target Start/End: Complemental strand, 22512435 - 22512360
Alignment:
Q  311 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 386  Q
    |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  22512435 ttatcagaataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattt 22512360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 389
Target Start/End: Original strand, 2688855 - 2688999
Alignment:
Q  247 ttcaaccaatgggatcca----ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttctt 342  Q
    |||| |||||||||||||    |||| |||| ||||||||| |||||||||||||||| | || | ||  || |||| ||||||||| | ||||||||||    
T  2688855 ttcacccaatgggatccatgagggtgatctcatgttcattggaggagtcaacatgcatgggaaactct--attagaatgagaactcgtgatcgagttctt 2688952  T
Q  343 cagaggtggaggagactgatgcaggagggttttcttagtaattttat 389  Q
    || |||||||||||||| ||| ||||||||||  |||||| ||||||    
T  2688953 cataggtggaggagactcatgtaggagggtttctttagtatttttat 2688999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 2188783 - 2188719
Alignment:
Q  322 agaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 386  Q
    ||||||||| ||||||||||||| || ||||||||||| | | |||| ||||| |||||||||||    
T  2188783 agaactcggagtcgagttcttcatagatggaggagactcacgtaggaaggtttccttagtaattt 2188719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 363
Target Start/End: Complemental strand, 24577909 - 24577813
Alignment:
Q  267 tggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 363  Q
    |||||||||||| |||| |||||| || |||||    |||  || |||||||| ||||||||  |||||| ||||||||| ||||||||||||||||    
T  24577909 tggtctcttgtttattggaggagtaaatatgcaagcgaagttctgtatcagaaggagaactcaaggtcgaattcttcagaagtggaggagactgatg 24577813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 37193064 - 37193107
Alignment:
Q  335 gagttcttcagaggtggaggagactgatgcaggagggttttctt 378  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||    
T  37193064 gagttcttcagagatggagtaaactgatgcaggagggttttctt 37193107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 253 - 391
Target Start/End: Complemental strand, 21845335 - 21845197
Alignment:
Q  253 caatgggatccaggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtgga 352  Q
    ||||||||||| |||||| |||||||||||| |||||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  21845335 caatgggatccgggtggtttcttgttcattggaggagtcaacatgcatgggaagctctttatcagaatgagaactcggggtcgagttcttcagaggtgga 21845236  T
Q  353 ggagactgatgcaggagggttttcttagtaattttatag 391  Q
      ||||||||||| |||||||||||||||||||||||||    
T  21845235 acagactgatgcaagagggttttcttagtaattttatag 21845197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 265 - 382
Target Start/End: Original strand, 18252124 - 18252241
Alignment:
Q  265 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 364  Q
    ||||||||||||| ||||| ||||||| |||||||| ||||||  ||||||| || |||||||||||||| |||||||||||||| |||||| |||||||    
T  18252124 ggtggtctcttgtccattggaggagtccacatgcatggaaagctgtttatcataatgagaactcggggtcaagttcttcagaggtagaggaggctgatgc 18252223  T
Q  365 aggagggttttcttagta 382  Q
    |||||||||| |||||||    
T  18252224 aggagggtttccttagta 18252241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 363
Target Start/End: Complemental strand, 19677672 - 19677630
Alignment:
Q  321 gagaactcggggtcgagttcttcagaggtggaggagactgatg 363  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19677672 gagaactcggggtcgagttcttcagaggtggaggagactgatg 19677630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 391
Target Start/End: Complemental strand, 21849312 - 21849278
Alignment:
Q  357 actgatgcaggagggttttcttagtaattttatag 391  Q
    ||||||||| |||||||||||||||||||||||||    
T  21849312 actgatgcacgagggttttcttagtaattttatag 21849278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 391
Target Start/End: Complemental strand, 21857226 - 21857192
Alignment:
Q  357 actgatgcaggagggttttcttagtaattttatag 391  Q
    ||||||||| |||||||||||||||||||||||||    
T  21857226 actgatgcacgagggttttcttagtaattttatag 21857192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 270 - 390
Target Start/End: Original strand, 10926905 - 10927026
Alignment:
Q  270 tctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggag 369  Q
    |||||| ||||||| |||||||||||||||| | |||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||     
T  10926905 tctcttattcattggaggagtcaacatgcatgggaagttctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggat 10927004  T
Q  370 ggttttc-ttagtaattttata 390  Q
    | ||||| ||||||||||||||    
T  10927005 gattttcattagtaattttata 10927026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 268 - 391
Target Start/End: Original strand, 10927811 - 10927934
Alignment:
Q  268 ggtctcttgttcattgaaggagtcaacatgcat-agaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcag 366  Q
    ||||||||||| |||| | |||||||| ||||| ||||| | |||||| |||| |||||||||||||||||||||||||| ||||||||||||| || ||    
T  10927811 ggtctcttgtttattgtaagagtcaacttgcatgagaaa-ctctttattagaatgagaactcggggtcgagttcttcagaagtggaggagactgttgtag 10927909  T
Q  367 gagggttttcttagtaattttatag 391  Q
    |||||||| ||||||||||||||||    
T  10927910 gagggtttccttagtaattttatag 10927934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 270 - 386
Target Start/End: Complemental strand, 13442015 - 13441901
Alignment:
Q  270 tctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggag 369  Q
    ||||||| |||||| |||||||||||||||| | |||| ||||||||||| ||||||| |   |||| ||||||||||||||||||||||||||||| ||    
T  13442015 tctcttgctcattggaggagtcaacatgcatgggaagctctttatcagaatgagaacttga--tcgaattcttcagaggtggaggagactgatgcagaag 13441918  T
Q  370 ggttttcttagtaattt 386  Q
    |||||| ||||||||||    
T  13441917 ggttttgttagtaattt 13441901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 265 - 391
Target Start/End: Original strand, 23988929 - 23989055
Alignment:
Q  265 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 364  Q
    |||| ||||||| ||||||||||||| ||||||||  | |||| ||||| || || ||||||||  |||||||||||||||||||| |||||||| |||     
T  23988929 ggtgatctcttgctcattgaaggagttaacatgcaagggaagctctttaccaaaacgagaactcaaggtcgagttcttcagaggtgtaggagactaatgt 23989028  T
Q  365 aggagggttttcttagtaattttatag 391  Q
    |||||||||| ||||||||||| ||||    
T  23989029 aggagggtttccttagtaatttcatag 23989055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 8966094 - 8966022
Alignment:
Q  304 aagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttc 376  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||    
T  8966094 aagctctttatcagaatgagaactcagggtcgagttcttcagaggtggaggagactgatgtaggaaggttttc 8966022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 264 - 386
Target Start/End: Original strand, 31915240 - 31915365
Alignment:
Q  264 aggtggtctcttgttcattgaaggagtcaaca-tgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggt---ggaggagact 359  Q
    |||| ||||||||||||||| ||||||||||| || || |||| | ||| || |||| ||||||||||||| |||||||||||||||   ||||||||||    
T  31915240 aggtagtctcttgttcattggaggagtcaacaatgaatggaaaactctt-attagaacgagaactcggggttgagttcttcagaggtggaggaggagact 31915338  T
Q  360 gatgcaggagggttttcttagtaattt 386  Q
    |||||| ||||||||| ||||||||||    
T  31915339 gatgcatgagggttttattagtaattt 31915365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 273 - 387
Target Start/End: Original strand, 40805571 - 40805685
Alignment:
Q  273 cttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggt 372  Q
    ||||||||| | |||||||| |||||||   || | | |||||||||  ||||||||||||||| ||||| | |||||||||||||||||| ||||  ||    
T  40805571 cttgttcatcggaggagtcatcatgcatgtgaaactccttatcagaacaagaactcggggtcgacttctttaaaggtggaggagactgatgtaggatagt 40805670  T
Q  373 tttcttagtaatttt 387  Q
    || |||| |||||||    
T  40805671 ttccttattaatttt 40805685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 311 - 374
Target Start/End: Original strand, 31522584 - 31522647
Alignment:
Q  311 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttt 374  Q
    ||||||||| |||||||||  ||||||||||||||||||||| | | |||||| ||||||||||    
T  31522584 ttatcagaacgagaactcgaagtcgagttcttcagaggtggaaggggctgatgtaggagggttt 31522647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 7e-32; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 265 - 391
Target Start/End: Original strand, 18203141 - 18203265
Alignment:
Q  265 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 364  Q
    ||||||||||||||||||  |||||||||||||||| |||| | |||||| | || ||||||||||| |||||||||||||||||||||||||||||||     
T  18203141 ggtggtctcttgttcattcgaggagtcaacatgcatggaaaactctttattaaaatgagaactcggg-tcgagttcttcagaggtggaggagactgatgt 18203239  T
Q  365 aggagggttttcttagtaattttatag 391  Q
    ||||||| ||||| |||||||||||||    
T  18203240 aggaggg-tttctcagtaattttatag 18203265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 265 - 389
Target Start/End: Original strand, 12881729 - 12881852
Alignment:
Q  265 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 364  Q
    |||||||||||||||||||||| ||||||||||||| | |||  ||| ||| ||| |||| ||||||||||||||||||  ||||||||||||||||||     
T  12881729 ggtggtctcttgttcattgaagaagtcaacatgcatgggaagttctt-atcggaatgagagctcggggtcgagttcttcttaggtggaggagactgatgt 12881827  T
Q  365 aggagggttttcttagtaattttat 389  Q
    |||||||||| ||||||||||||||    
T  12881828 aggagggtttccttagtaattttat 12881852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 269 - 386
Target Start/End: Original strand, 22888963 - 22889080
Alignment:
Q  269 gtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcagga 368  Q
    ||||||||||||||| ||||||||| |||||| | |||| |||||||| || ||||||| |||||| | ||| | ||||||||| |||||||||| ||||    
T  22888963 gtctcttgttcattggaggagtcaatatgcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtagga 22889062  T
Q  369 gggttttcttagtaattt 386  Q
    ||||||||||||||||||    
T  22889063 gggttttcttagtaattt 22889080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 266 - 382
Target Start/End: Complemental strand, 34374167 - 34374051
Alignment:
Q  266 gtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgca 365  Q
    |||||||||||||||||| | |||||||||||||| | || | |||||||| || ||||||||||||| |||||||||||| |||||||||||| ||| |    
T  34374167 gtggtctcttgttcattggaagagtcaacatgcatgggaatctctttatcaaaatgagaactcggggtggagttcttcagatgtggaggagactaatgta 34374068  T
Q  366 ggagggttttcttagta 382  Q
     |||||||| |||||||    
T  34374067 agagggtttccttagta 34374051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 321 - 391
Target Start/End: Original strand, 30049629 - 30049699
Alignment:
Q  321 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 391  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  30049629 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 30049699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 321 - 391
Target Start/End: Original strand, 30051916 - 30051986
Alignment:
Q  321 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 391  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  30051916 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 30051986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 269 - 386
Target Start/End: Original strand, 22873520 - 22873637
Alignment:
Q  269 gtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcagga 368  Q
    ||||||||||||||| ||||||||| |||||| | |||| |||||||| || ||||||| ||| |||| ||| | ||||||||| |||||||||| ||||    
T  22873520 gtctcttgttcattggaggagtcaatatgcatgggaagctctttatcataatgagaacttgggatcgatttccttagaggtggatgagactgatgtagga 22873619  T
Q  369 gggttttcttagtaattt 386  Q
    ||||||||||| ||||||    
T  22873620 gggttttcttaataattt 22873637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 269 - 386
Target Start/End: Original strand, 22910506 - 22910623
Alignment:
Q  269 gtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcagga 368  Q
    ||||||||||||||| ||||||||| || ||| | |||| |||||||| || ||||||| |||||| | ||| | ||||||||| |||||||||| ||||    
T  22910506 gtctcttgttcattggaggagtcaatatacatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtagga 22910605  T
Q  369 gggttttcttagtaattt 386  Q
    ||||||||||||||||||    
T  22910606 gggttttcttagtaattt 22910623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 3541959 - 3542026
Alignment:
Q  321 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttta 388  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  3541959 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaatttta 3542026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 269 - 391
Target Start/End: Complemental strand, 12778784 - 12778664
Alignment:
Q  269 gtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcagga 368  Q
    ||||||||||||||| ||||||||||||||| || || | ||  ||||||| ||||| | |||||| |||||||||||||||||||||||||||| | ||    
T  12778784 gtctcttgttcattggaggagtcaacatgcaaaggaaactct--atcagaatgagaatttggggtcaagttcttcagaggtggaggagactgatgtaaga 12778687  T
Q  369 gggttttcttagtaattttatag 391  Q
    |||||||| ||||| || |||||    
T  12778686 gggttttcatagtatttctatag 12778664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 386
Target Start/End: Original strand, 11194398 - 11194443
Alignment:
Q  341 ttcagaggtggaggagactgatgcaggagggttttcttagtaattt 386  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  11194398 ttcagaggtggaggagactgatgtaggagagttttcttagtaattt 11194443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 8047717 - 8047661
Alignment:
Q  309 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgca 365  Q
    |||||| ||||  ||||||||||||| ||||||||||||||||||||||| ||||||    
T  8047717 ctttattagaattagaactcggggtcaagttcttcagaggtggaggagaccgatgca 8047661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 18726879 - 18726915
Alignment:
Q  355 agactgatgcaggagggttttcttagtaattttatag 391  Q
    ||||||||||||||||||||| |||||||||||||||    
T  18726879 agactgatgcaggagggtttttttagtaattttatag 18726915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 375
Target Start/End: Original strand, 32361109 - 32361173
Alignment:
Q  311 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 375  Q
    |||||| || ||||||||| ||||||||| || |||||||||| ||||| ||| |||||||||||    
T  32361109 ttatcataatgagaactcgaggtcgagttttttagaggtggagaagactaatgtaggagggtttt 32361173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 18720031 - 18720069
Alignment:
Q  322 agaactcggggtcgagttcttcagaggtggaggagactg 360  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  18720031 agaattcggggtcgagttcttcaaaggtggaggagactg 18720069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 265 - 391
Target Start/End: Original strand, 22716318 - 22716444
Alignment:
Q  265 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 364  Q
    ||||||||||||||||||| ||||||||||||| || | |||| |||||||| || |||||||||||||||||||||| |||| ||||||||||||||||    
T  22716318 ggtggtctcttgttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatgc 22716417  T
Q  365 aggagggttttcttagtaattttatag 391  Q
    ||  | ||||| |||||||||| ||||    
T  22716418 agttgagttttattagtaatttaatag 22716444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 265 - 391
Target Start/End: Complemental strand, 22988899 - 22988773
Alignment:
Q  265 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 364  Q
    ||||||||||||||||||| ||||||||||||| || | |||| |||||||| || |||||||||||||||||||||| |||| ||||||||||||||||    
T  22988899 ggtggtctcttgttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatgc 22988800  T
Q  365 aggagggttttcttagtaattttatag 391  Q
    ||  | ||||| |||||||||| ||||    
T  22988799 agttgagttttattagtaatttaatag 22988773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 265 - 389
Target Start/End: Original strand, 10494628 - 10494752
Alignment:
Q  265 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 364  Q
    ||||||||||||||||||| ||||||| |||||||| | ||||  |||||||| |  |||||| | |||||||||||||||| || ||| |||||||||     
T  10494628 ggtggtctcttgttcattggaggagtcgacatgcatgggaagctatttatcaggatcagaacttgaggtcgagttcttcagaagtagagaagactgatgt 10494727  T
Q  365 aggagggttttcttagtaattttat 389  Q
    | |||||||| ||||||| ||||||    
T  10494728 atgagggtttccttagtatttttat 10494752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 363
Target Start/End: Original strand, 7634998 - 7635092
Alignment:
Q  269 gtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 363  Q
    ||||||||||||| | |||||||||||||||| |  |||  ||||| |||| ||||| | ||||||||||||||||||| |||||||||||||||    
T  7634998 gtctcttgttcatcggaggagtcaacatgcatggggagctttttattagaatgagaatttggggtcgagttcttcagagatggaggagactgatg 7635092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 321 - 391
Target Start/End: Complemental strand, 13085471 - 13085398
Alignment:
Q  321 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggaggg---ttttcttagtaattttatag 391  Q
    ||||||||||||||||||||||||||| |||| |||||||||| |||||||   |||| |||||||||||||||    
T  13085471 gagaactcggggtcgagttcttcagagatggaagagactgatgtaggagggtgttttttttagtaattttatag 13085398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 388
Target Start/End: Complemental strand, 6659697 - 6659640
Alignment:
Q  330 gggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttta 388  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  6659697 gggtcgagttcttcagaggtagaggagactgatgtaggaggg-tttcttagtaatttta 6659640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 371
Target Start/End: Original strand, 9260313 - 9260375
Alignment:
Q  309 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggaggg 371  Q
    |||||||| ||  ||||||||||||||||||||| ||| || ||||||| ||||||| |||||    
T  9260313 ctttatcaaaataagaactcggggtcgagttctttagacgtagaggagattgatgcatgaggg 9260375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 265 - 386
Target Start/End: Complemental strand, 365983 - 365863
Alignment:
Q  265 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 364  Q
    ||||||||| ||||||||| | |||||||||| ||| ||| || |||||||| || ||||||||| ||||||||||||||||||||||||||| ||||||    
T  365983 ggtggtctcctgttcattggaagagtcaacatacatggaa-gctctttatcaaaacgagaactcgaggtcgagttcttcagaggtggaggagattgatgc 365885  T
Q  365 aggagggttttcttagtaattt 386  Q
    |||||| |||| ||||||||||    
T  365884 aggaggattttattagtaattt 365863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 316 - 386
Target Start/End: Complemental strand, 3064121 - 3064051
Alignment:
Q  316 agaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 386  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3064121 agaacgagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttgttagtaattt 3064051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 265 - 374
Target Start/End: Complemental strand, 8536764 - 8536655
Alignment:
Q  265 ggtggtctcttgttcattgaaggagtcaacatgcat-agaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 363  Q
    |||| |||||||||||||| | ||||||||||  || ||||| |  ||||||||||  ||||||||| ||||||||||| ||||||||| ||| ||||||    
T  8536764 ggtgatctcttgttcattggaagagtcaacatatatgagaaa-ctttttatcagaataagaactcggagtcgagttctttagaggtggaagaggctgatg 8536666  T
Q  364 caggagggttt 374  Q
     ||||||||||    
T  8536665 taggagggttt 8536655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 2473045 - 2472969
Alignment:
Q  310 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 386  Q
    |||||||||| |||||||||||||||||||||| | | ||||||||  ||||| ||  | |||||| ||||||||||    
T  2473045 tttatcagaatgagaactcggggtcgagttctttaaaagtggaggaagctgatacacaaaggttttattagtaattt 2472969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 43304306 - 43304270
Alignment:
Q  350 ggaggagactgatgcaggagggttttcttagtaattt 386  Q
    |||||||||||||||||||||||||| ||||||||||    
T  43304306 ggaggagactgatgcaggagggttttattagtaattt 43304270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 24516743 - 24516698
Alignment:
Q  323 gaactcggggtcgagttcttcagaggtggaggagactgatgcagga 368  Q
    ||||||||||||||||||||| || |||||||||| ||||| ||||    
T  24516743 gaactcggggtcgagttcttctgaagtggaggagattgatgtagga 24516698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 321 - 391
Target Start/End: Complemental strand, 45993 - 45923
Alignment:
Q  321 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 391  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  45993 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 45923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 269 - 386
Target Start/End: Original strand, 10359 - 10476
Alignment:
Q  269 gtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcagga 368  Q
    ||||||||||||||| ||||||||| || ||| | |||| |||||||| || ||||||| |||||| | ||| | ||||||||| |||||||||| ||||    
T  10359 gtctcttgttcattggaggagtcaatattcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtagga 10458  T
Q  369 gggttttcttagtaattt 386  Q
    ||||||||||||||||||    
T  10459 gggttttcttagtaattt 10476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 265 - 374
Target Start/End: Original strand, 49018 - 49127
Alignment:
Q  265 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 364  Q
    |||| |||| ||||||| | | |||||||||||||| |||     ||||||||||  |||||||||||| |||||||||||||||||||||||||||||     
T  49018 ggtgttctcgtgttcataggaagagtcaacatgcatggaagttcttttatcagaataagaactcggggttgagttcttcagaggtggaggagactgatgt 49117  T
Q  365 aggagggttt 374  Q
    ||||| ||||    
T  49118 aggagagttt 49127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 369
Target Start/End: Original strand, 37484 - 37523
Alignment:
Q  330 gggtcgagttcttcagaggtggaggagactgatgcaggag 369  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  37484 gggtcgagttcttcagaggtggaggagactgatgtaggag 37523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 382
Target Start/End: Original strand, 145442 - 145555
Alignment:
Q  269 gtctcttgttcattgaaggagtcaaca-tgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcagg 367  Q
    ||||||||||||||||||||||||||| || |  || | | |||||||||||  | |||||||| || |||||||| ||||||||||||||||||| |||    
T  145442 gtctcttgttcattgaaggagtcaacaatgaacggacaactctttatcagaataataactcggg-tcaagttcttctgaggtggaggagactgatgtagg 145540  T
Q  368 agggttttcttagta 382  Q
    |||||||| ||||||    
T  145541 agggttttattagta 145555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 373
Target Start/End: Complemental strand, 144284 - 144177
Alignment:
Q  269 gtctcttgttcattgaaggagtcaaca-tgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggag---actgatgc 364  Q
    ||||||||||||| ||||||||| ||| || || || | | |||||||||||  |||||||||| || |||||||||||| ||||||||   ||||||||    
T  144284 gtctcttgttcatcgaaggagtcgacaatgaatggacaactctttatcagaataagaactcggg-tcaagttcttcagagatggaggaggagactgatgc 144186  T
Q  365 aggagggtt 373  Q
    |||||||||    
T  144185 aggagggtt 144177  T

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