View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18986_low_7 (Length: 439)
Name: NF18986_low_7
Description: NF18986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18986_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 203 - 427
Target Start/End: Complemental strand, 27636258 - 27636034
Alignment:
| Q |
203 |
ataatctgagtgatgtttccatggttccatgcaatgttgttaagtactctaaaaggtttgtcaaatttgaaacattcacagggatacttactttgcatga |
302 |
Q |
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| T |
27636258 |
ataatctgagtgatgtttccatggttccatgcaatgttgttaagtactctaaaatgtttgtcaaatttgaaacattcacagggatacttactttgcatga |
27636159 |
T |
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| Q |
303 |
ttgttttcgcaactttattggtattccctgcaattctaattcttttcggtgtgatgaatttaatttgattacaaaggactcttcagattcttttgatcaa |
402 |
Q |
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| T |
27636158 |
ttgttttcacaactttattggtattccttgcaattctaattcttttcggtgtgatgaatttaatttgattacaaaggactcttcagattcttttgatcaa |
27636059 |
T |
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| Q |
403 |
agaggatggttccttgcgacatatt |
427 |
Q |
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||||||| || |||||||||||||| |
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| T |
27636058 |
agaggatcgtcccttgcgacatatt |
27636034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 27743485 - 27743671
Alignment:
| Q |
18 |
tttagttccctgtttgaaactctctaatttttcgcttgcaaatcattttcttcactttgttaggttatgtttttattctattttgattgggtttattagt |
117 |
Q |
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| T |
27743485 |
tttagttccctgtttgaaactctctaatttttctcttgcaaatcattttcttcactttgttaggttatgtttttattctattttgcttgggtttattagt |
27743584 |
T |
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| Q |
118 |
tcatttgttgagaggcttgacttgtattgttcccttcggttacttttccataaggacatactgcatgatttaagtacttcacaacat |
204 |
Q |
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| T |
27743585 |
tcatttgttgagaggcttgacttgtactgttcccttcggttacttttccataaggacatactgcatgattttagtacttcacaacat |
27743671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 27 - 260
Target Start/End: Original strand, 2786905 - 2787128
Alignment:
| Q |
27 |
ctgtttgaaactctctaatttttcgcttgcaaatcattttcttcactttgttaggttatgtttttattctattttgattgggtttattagttcatttgtt |
126 |
Q |
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||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| | |||||||| |||||||||||| |
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| T |
2786905 |
ctgtttgcaactctctaatttttctcttgcaaatcatttccttcactttgttaggttatgtttatattctattttgctggggtttataagttcatttgtt |
2787004 |
T |
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| Q |
127 |
gagaggcttgacttgtattgttcccttcggttacttttccataaggacatactgcatgatttaagtacttcacaacataatctgagtgatgtttccatgg |
226 |
Q |
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| T |
2787005 |
aagaggcttgccttgtactgttcccttcggttacttttctgtaaggacatactgcatgatttgagtacttcacaacataatctgagtg----------gg |
2787094 |
T |
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| Q |
227 |
ttccatgcaatgttgttaagtactctaaaaggtt |
260 |
Q |
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||| ||| |||||||||||||||||||||||||| |
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| T |
2787095 |
ttctatgtaatgttgttaagtactctaaaaggtt |
2787128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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