View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18986_low_8 (Length: 408)
Name: NF18986_low_8
Description: NF18986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18986_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 2 - 271
Target Start/End: Complemental strand, 43515951 - 43515682
Alignment:
| Q |
2 |
gtggagcagcacagaagaggaagaataactgtgaagtcaaaaaccgtttctgataatgatgatttagaagttgatatttcattgagtccacgtgtcaatg |
101 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43515951 |
gtggaccagaacagaagaggaagaataactgtgaagtcaaaaaccgtttctgataatgatgatttagaagttgatatttcattgagtccacgtgtcaatg |
43515852 |
T |
|
| Q |
102 |
ctgtgaaaccttcaaggactgtggctataaccgatcaagcaaccgctcttgttcaagctggcgttccagttattctcttggcggctggtgagcctgattt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43515851 |
ctgtgaaaccttcaaggactgtggctataaccgatcaagcaaccgctcttgttcaagctggcgttccagttattctcttggcggctggtgagcctgattt |
43515752 |
T |
|
| Q |
202 |
tgatacacctgctgtcatagctcaggtctttcccctttacattctcattttcaattcctcaaattctgtc |
271 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43515751 |
tgattcacctgctgtcatagctcaggtctttcccctttacattctcattttcaattcctcaaattctgtc |
43515682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 323 - 392
Target Start/End: Complemental strand, 43515677 - 43515608
Alignment:
| Q |
323 |
ttttttaacaatcatcaatgaatcttctttgctagtattttacatgtatgccatttttatattaaaattt |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
43515677 |
ttttttaacaatcatcaatgaatcttctttgctagtattttacatgtatacaatttttatattaaaattt |
43515608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 38106476 - 38106334
Alignment:
| Q |
68 |
gaagttgatatttcattgagtccacgtgtcaatgctgtgaaaccttcaaggactgtggctataaccgatcaagcaaccgctcttgttcaagctggcgttc |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||| || |||||||| |||||||| |||||||||||||||| |
|
|
| T |
38106476 |
gaagttgatatttcattgagtccacgtgtcaatgctgttaagccttcaagaactgtcgctattactgatcaagccaccgctctcgttcaagctggcgttc |
38106377 |
T |
|
| Q |
168 |
cagttattctcttggcggctggtgagcctgattttgatacacc |
210 |
Q |
| |
|
| ||||||| |||||| || ||||| ||||||||||||||||| |
|
|
| T |
38106376 |
ctgttattcgcttggctgccggtgaacctgattttgatacacc |
38106334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University