View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18986_low_9 (Length: 396)
Name: NF18986_low_9
Description: NF18986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18986_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 10794112 - 10794417
Alignment:
| Q |
1 |
aatacacccatttaacaaaacacgtctaaaatcagacacattcattggattatatttcttaggaacaagcattacaaacaaacaatcattacctttaaca |
100 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10794112 |
aatacacccatttaacgaaacacatctaaaatcagacacattcattggattatatttcttaggaacaagcattacaaacgaacaatcattacctttaaca |
10794211 |
T |
|
| Q |
101 |
agttttccattagtatgaaattccatcactaccctcaagaaatcaactttaataagctcccaaaactccttaacaaacgtgaaattaactccatcaggac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10794212 |
agttttccattagtatgaaattccatcactaccctcaagaaatccactttaataagctcccaaaactccttaacaaacgtgaaattaactccatcaggac |
10794311 |
T |
|
| Q |
201 |
ccggattttctgagtctgaactatcacaatcccagaccgcctttcttacctcctcttcggagaaatcaaaaactcattatcttccgcattaattctcttg |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10794312 |
caggattttctgagtctgaactatcacaatcccagaccgcctttcttacctcctcttcggagaaatcaaaaactcattatcttccgcattaattctcttg |
10794411 |
T |
|
| Q |
301 |
aaattg |
306 |
Q |
| |
|
|||||| |
|
|
| T |
10794412 |
aaattg |
10794417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University