View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18987_high_1 (Length: 1039)
Name: NF18987_high_1
Description: NF18987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18987_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 709; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 709; E-Value: 0
Query Start/End: Original strand, 18 - 762
Target Start/End: Complemental strand, 32252409 - 32251665
Alignment:
| Q |
18 |
ccaccaaatccatcaaatgaagttgaaggcttgcgacgttcgaaacgtaggaatgtacagcctgaacgttacgtaggttgtgttgttgagaagttggaag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32252409 |
ccaccaaatccatcaaatgaagttgaaggcttgcgacgttcgaaacgtaggaatgtacagcctgagcgttacgtaggttgtgttgttgagaagttggaag |
32252310 |
T |
|
| Q |
118 |
ttggtaattttcgaacgtgtccctacaagagaacaacttatatgatagaagatgaaaactcttcttcagattcagaagaggatggtggtaagagtggtca |
217 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32252309 |
tgggtaattttcgaacgtgtccctacaagagaacaacttatatgatagaagatgaaaactcttcttcagattcagaagaggatggtggtaagagtgatca |
32252210 |
T |
|
| Q |
218 |
aaaggttaataaggtgaatcattgcaaagctattaatgtgaacacaaggaacaaaaatgatgatggtgatggcaagtttaaggtacataaaactgatgac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32252209 |
aaaggttaataaggtgaatcattgcaaagctattaatgtgaacacaaggaacaaaaatgatgatggtgatggcaagtttaaggtacataaaactgatgac |
32252110 |
T |
|
| Q |
318 |
atttcttccaaatatcattatttgactaattatatttctagtgcaaagaagaatggtgctgatgtgttgaatttggagtatggcaatgagcctataacaa |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||| |
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| T |
32252109 |
atttcttccaaatatcattatttgactaattatatttctagtgcaaagaagaatggtgctgatgtgttgaatttggagtacggaaatgagcctacaacaa |
32252010 |
T |
|
| Q |
418 |
tatcaagtgatgaagaagttgatggtaatgttactttgagagattataatagtttcttcaaagagaagattaagaggaagagacttcatgttgtggatga |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
32252009 |
tatcaagtgatgaagaagttgatggtaatgttactttgagagattataatagtttcttcaaggagaagattaagaggaagagacttcatgttgtggatga |
32251910 |
T |
|
| Q |
518 |
tatggattttgaaaccaaatgggaagggatacatttcaaaaagggagctccaacagaaaattttcattcgagttatttgtctaacagaagtcatgttcat |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32251909 |
tatggattttgaaaccaaatgggaagggatacatttcaaaaagggagctccaacagaaaattttcattcgagttatttgtctaacagaagtcatgttcat |
32251810 |
T |
|
| Q |
618 |
gaagaacaagatcataaaggcggtagaacattcaaatctgatgcccgcaaggaaataatagatagttacatgaagaatttcgatagtctaccaactgaag |
717 |
Q |
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| T |
32251809 |
gaagaacaagatcataaaggcggtagaacattcaatgctgatgcccgcaaggaaataatagatagttacatgaagaatttcgatagtctaccaactgaag |
32251710 |
T |
|
| Q |
718 |
aagagcctactgtaaatgagaaccggaaggaaacaagcatgttgg |
762 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32251709 |
aagagcctactgtaaatgagaaccggaaggaaacaagcatgttgg |
32251665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 812 - 897
Target Start/End: Complemental strand, 32251615 - 32251530
Alignment:
| Q |
812 |
tgctgatgatttggatgccttgtgggaagaaatgaatacagctttgacatcaagttatcttcttgatggagctgcggtgtgtgaca |
897 |
Q |
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| T |
32251615 |
tgctgatgatttggatgccttgtgggaagaaatgaatacagctttgacatcaagttatcttcttgatggaactgcggtgtgtgaca |
32251530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 978 - 1030
Target Start/End: Complemental strand, 32251449 - 32251397
Alignment:
| Q |
978 |
atgtgaaaattatgattgattgacagtgtacaaagtctctacactgatgatgt |
1030 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
32251449 |
atgtgaaaattatgattggttgacagtgtacaaagtctctacgctgatgatgt |
32251397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 834 - 897
Target Start/End: Complemental strand, 32229101 - 32229038
Alignment:
| Q |
834 |
tgggaagaaatgaatacagctttgacatcaagttatcttcttgatggagctgcggtgtgtgaca |
897 |
Q |
| |
|
|||||| ||||| ||||| ||| ||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
32229101 |
tgggaataaatggatacaacttcgacatcaagttatcttcttgatggaactgaggtgtgtgaca |
32229038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 431 - 621
Target Start/End: Complemental strand, 8846343 - 8846153
Alignment:
| Q |
431 |
agaagttgatggtaatgttactttgagagattataatagtttcttcaaagagaagattaagaggaagagacttcatgttgtggatgatatggattttgaa |
530 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||| ||||||||| |||||||||| || || || | ||||||||| | || ||||||||||||||| |
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| T |
8846343 |
agaagttgatgataatgttactttgggacattattatagtttctgcaaagagaagcctacgaagaggcgacttcatggttcagacgatatggattttgaa |
8846244 |
T |
|
| Q |
531 |
accaaatgggaagggatacatttcaaaaagggagctccaacagaaaattttcattcgagttatttgtctaacagaagtcatgttcatgaag |
621 |
Q |
| |
|
|||||||||||||| || | ||||||||| ||||||| |||| ||| ||||| | || |||| | ||||||||||||||||| |||| |
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| T |
8846243 |
accaaatgggaaggaattcgtttcaaaaaaggagctcaaacaaaaagaaaccattcaatttgtttgacaaacagaagtcatgttcaagaag |
8846153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 414 - 724
Target Start/End: Original strand, 8821497 - 8821809
Alignment:
| Q |
414 |
acaatatcaagtgatgaagaagttgatggtaatgttactttgagagattataatagtttcttcaaagaga--agattaagaggaagagacttcatgttgt |
511 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| ||||| ||| | |||| || | | |||||| || || || || | || |||||| | |
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| T |
8821497 |
acaatatcaagtgatgtagaagttgatgataatgttacaatgagacattcttatagattttgccaagagagaagcctacgaagaggcgatttcatggtta |
8821596 |
T |
|
| Q |
512 |
ggatgatatggattttgaaaccaaatgggaagggatacatttcaaaaagggagctccaacagaaaattttcattcgagttatttgtctaacagaagtcat |
611 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| ||||||||||| |||| || || | ||| | |||||| | || ||||| |||| ||||||| |
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| T |
8821597 |
agatgatatgaattttgaaaccaaataagaagggattcatttcaaaaaaggagatcaaataaaaagatatcattcaatttggttgtcaaacaaaagtcat |
8821696 |
T |
|
| Q |
612 |
gttcatgaagaacaagatcataaaggcggtagaacattcaaatctgatgcccgcaaggaaataatagatagttacatgaagaatttcgatagtctaccaa |
711 |
Q |
| |
|
||||| |||||||||||| ||||||| | | ||| || ||| | |||| | ||||||||||| || | ||||||||||||||| |||||| | | | |
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|
| T |
8821697 |
gttcaagaagaacaagataataaaggtgacataacgttaaaaattcatgcacataaggaaataattgacacttacatgaagaatttggatagtttttcga |
8821796 |
T |
|
| Q |
712 |
ctgaagaagagcc |
724 |
Q |
| |
|
||||||||||||| |
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| T |
8821797 |
ctgaagaagagcc |
8821809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 29 - 181
Target Start/End: Complemental strand, 8846502 - 8846350
Alignment:
| Q |
29 |
atcaaatgaagttgaaggcttgcgacgttcgaaacgtaggaatgtacagcctgaacgttacgtaggttgtgttgttgagaagttggaagttggtaatttt |
128 |
Q |
| |
|
||||||| || |||||||| | |||||||| |||||||||||||| || || |||||||| |||||| | ||||||||||||||||||||||| |||| |
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|
| T |
8846502 |
atcaaatcaaattgaaggcctacgacgttcaaaacgtaggaatgtccaacccaaacgttacataggttcttctgttgagaagttggaagttggtactttt |
8846403 |
T |
|
| Q |
129 |
cgaacgtgtccctacaagagaacaacttatatgatagaagatgaaaactcttc |
181 |
Q |
| |
|
|||| | | || ||||||| | | |||| ||||||| |||||||| ||||| |
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|
| T |
8846402 |
cgaatgaggccatacaagataggatgttatttgatagaggatgaaaattcttc |
8846350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 593 - 724
Target Start/End: Complemental strand, 8820101 - 8819970
Alignment:
| Q |
593 |
tttgtctaacagaagtcatgttcatgaagaacaagatcataaaggcggtagaacattcaaatctgatgcccgcaaggaaataatagatagttacatgaag |
692 |
Q |
| |
|
|||||| |||| | |||||||||| |||||||||||| ||||||| | ||||| || || |||||| | ||||||||||| || | |||||||||| |
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|
| T |
8820101 |
tttgtcaaacaaaggtcatgttcaagaagaacaagataataaaggtgacagaacgttaaatgttgatgcacataaggaaataattgacacttacatgaag |
8820002 |
T |
|
| Q |
693 |
aatttcgatagtctaccaactgaagaagagcc |
724 |
Q |
| |
|
||||| |||||||| ||| ||||||||||||| |
|
|
| T |
8820001 |
aatttggatagtcttccagctgaagaagagcc |
8819970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 519 - 559
Target Start/End: Complemental strand, 8820162 - 8820122
Alignment:
| Q |
519 |
atggattttgaaaccaaatgggaagggatacatttcaaaaa |
559 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
8820162 |
atggattttaaaaccaaatgggaagggattcatttcaaaaa |
8820122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 814 - 896
Target Start/End: Original strand, 36373866 - 36373948
Alignment:
| Q |
814 |
ctgatgatttggatgccttgtgggaagaaatgaatacagctttgacatcaagttatcttcttgatggagctgcggtgtgtgac |
896 |
Q |
| |
|
|||||||||||| | | |||||||||||||| | ||||||||||||||||||||||||||||||||| || |||||||||| |
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|
| T |
36373866 |
ctgatgatttggccgacatgtgggaagaaatggaaacagctttgacatcaagttatcttcttgatggaaatgaggtgtgtgac |
36373948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 614 - 721
Target Start/End: Original strand, 36373681 - 36373788
Alignment:
| Q |
614 |
tcatgaagaacaagatcataaaggcggtagaacattcaaatctgatgcccgcaaggaaataatagatagttacatgaagaatttcgatagtctaccaact |
713 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| || || |||||||| | ||||| |||| ||| ||||||| | ||||| ||||| ||||||||| |
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|
| T |
36373681 |
tcatgaagaacaggatcataaaggcggtagaatgttaaatgctgatgcctgtgaggaagtaatcgatgcttacatggataattttgatagcctaccaact |
36373780 |
T |
|
| Q |
714 |
gaagaaga |
721 |
Q |
| |
|
|||||||| |
|
|
| T |
36373781 |
gaagaaga |
36373788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 36384547 - 36384588
Alignment:
| Q |
86 |
ttacgtaggttgtgttgttgagaagttggaagttggtaattt |
127 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
36384547 |
ttacgtaggttgtagtgtcgagaagttggaagttggtaattt |
36384588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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