View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18987_low_2 (Length: 509)
Name: NF18987_low_2
Description: NF18987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18987_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 12 - 491
Target Start/End: Complemental strand, 50764997 - 50764518
Alignment:
| Q |
12 |
atgaattgataatgtttgtttagtnnnnnnnntcacaacagaacgtgtggatttcagagctaatttgagtctatcgtgcgcatgcacacgtgtagtagcc |
111 |
Q |
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| T |
50764997 |
atgaattgataatgtttgtttagtaaaaaaaatcacaacagaacgtgtggatttcagagctaatttgagtctatcgtgcgcatgcacacgtgtagtagcc |
50764898 |
T |
|
| Q |
112 |
agtaggtctttgttttttaagcatgattgcatgaacgaatagaaggaaaatctgcacattggtgaataatttactgaacacaaaacaaccacagagaata |
211 |
Q |
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| T |
50764897 |
agtaggtctttgttttttaagcatgattgcatgaacgaatagaaggaaaatctgcacattggtgaataatttactgaacacaaaacaaccacagagaata |
50764798 |
T |
|
| Q |
212 |
aagctgcacgatgacataacagaagcagcaaccagttgcaactatggaaataagccaagaaacatttgacaataagctaagaatgaccaaagaaaaccct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764797 |
aagctgcacgatgacataacagaagcagcaaccagttgcaactatggaaataagccaagaaacatttgacaataagctaagaatgaccaaagaaaaccct |
50764698 |
T |
|
| Q |
312 |
aaatgaatcaaagtgatagaaaacaacttgataagcctctcaaattgcttcaccaacatctaatttgaagaaaacttttagcatggatctcattctgaat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764697 |
aaatgaatcaaagtgatagaaaacaacttgataagcctctcaaattgcttcaccaacatctaatttgaagaaaacttttagcatggatctcattctgaat |
50764598 |
T |
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| Q |
412 |
ttgtctaacatttgactatgaacctaaacttttgcaaaaagccccgaattacaactgattaaaaacattcatcctccaca |
491 |
Q |
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| T |
50764597 |
ttgtctaacatttgactatgaacctaaacttttgcaaaaagccccgaattacaactgattaaaaacattcatcctccaca |
50764518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 347 - 432
Target Start/End: Complemental strand, 35153576 - 35153489
Alignment:
| Q |
347 |
cctctcaaattgcttcaccaa---catctaatttgaagaaaacttttagcatggatctcattctgaatttgtctaacatttgactatga |
432 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||||| ||||| |||||||| |
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| T |
35153576 |
cctctcaaattgcttcaccaataacatcttatttgaagaaaactttaagcatgg-tctcattctgaatttgtccaacatgagactatga |
35153489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 491
Target Start/End: Original strand, 35100847 - 35100881
Alignment:
| Q |
457 |
gaattacaactgattaaaaacattcatcctccaca |
491 |
Q |
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| T |
35100847 |
gaattacaactgattaaaaacattcatcctccaca |
35100881 |
T |
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