View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18987_low_3 (Length: 504)

Name: NF18987_low_3
Description: NF18987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18987_low_3
NF18987_low_3
[»] chr8 (6 HSPs)
chr8 (151-366)||(31508183-31508397)
chr8 (139-366)||(18205273-18205501)
chr8 (261-366)||(19445813-19445917)
chr8 (261-366)||(19535160-19535264)
chr8 (436-488)||(31508061-31508113)
chr8 (436-488)||(18205151-18205203)
[»] chr5 (5 HSPs)
chr5 (259-366)||(18440787-18440893)
chr5 (150-226)||(18440641-18440714)
chr5 (14-128)||(11845154-11845276)
chr5 (14-81)||(12517336-12517403)
chr5 (35-75)||(11855539-11855579)
[»] chr7 (2 HSPs)
chr7 (259-366)||(31455998-31456105)
chr7 (139-226)||(31456158-31456242)
[»] chr2 (2 HSPs)
chr2 (259-366)||(31837452-31837558)
chr2 (150-226)||(31837620-31837693)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 6e-66; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 151 - 366
Target Start/End: Complemental strand, 31508397 - 31508183
Alignment:
Q  151 aactttaaaatcaaaggtaataataataagaactttaaaaatgaagtaaaagttctttggaaactttcgttttttaaactaaatttatgtactcctttta 250  Q
    ||||||||||||||||||||||||||   |||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| ||| ||||||||     
T  31508397 aactttaaaatcaaaggtaataataa---gaacttaaaaaatgaagtaaaagttgtttggaaactttagttttttaaactaaatttgtgtcctccttttt 31508301  T
Q  251 nnnnnnnn-acaaaatgatatattaaagaaatttcaagaaattgatttgtgatagaaacattatatttatgataatttatatccatgcatt-aaattttt 348  Q
             |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31508300 tttttttttacaaaatgatatattaaagagaattcaagaaattgatttgtgatagaaacattatatttatgataatttatatccatgcattcaaattttt 31508201  T
Q  349 atttcagattataaattc 366  Q
    |||||| |||||||||||    
T  31508200 atttcatattataaattc 31508183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 139 - 366
Target Start/End: Complemental strand, 18205501 - 18205273
Alignment:
Q  139 atggtttgaaacaactttaaaatcaaaggtaataataataagaactttaaaaatgaagtaaaagttctttggaaactttcgttttttaaactaaatttat 238  Q
    |||||| ||| ||||||||||||||||| |||||||||   ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  18205501 atggttagaagcaactttaaaatcaaagttaataataa---gaactttaaaaatgaagtaaaagttgtttggaaactttagttttttaaactaaatttat 18205405  T
Q  239 gtactccttttannnnnnnn--acaaaatgata---tattaaagaaatttcaagaaattgatttgtgatagaaacattatatttatgataatttatatcc 333  Q
    ||||  |||||           |||||||||||   ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18205404 gtacaactttttttttctttttacaaaatgatagtatattaaaaaaatt-caagaaattgatttgtgatagaaacattatatttatgataatttatatcc 18205306  T
Q  334 atgcattaaatttttatttcagattataaattc 366  Q
    |||||||||||||||||||||||||||||||||    
T  18205305 atgcattaaatttttatttcagattataaattc 18205273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 261 - 366
Target Start/End: Complemental strand, 19445917 - 19445813
Alignment:
Q  261 aaaatgatatattaaagaaatttcaagaaattgatttgtgatagaaacattatatttatgataatttatatccatgcattaaatttttatttcagattat 360  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||| |||||||||| |||||    
T  19445917 aaaatgatatattaaaaaaatttcaagaaattgatttgcgatagaaacattatatttatgatga-ttatatccatgctttaaaattttatttcaaattat 19445819  T
Q  361 aaattc 366  Q
    ||||||    
T  19445818 aaattc 19445813  T

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Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 261 - 366
Target Start/End: Original strand, 19535160 - 19535264
Alignment:
Q  261 aaaatgatatattaaagaaatttcaagaaattgatttgtgatagaaacattatatttatgataatttatatccatgcattaaatttttatttcagattat 360  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||| |||||||||| |||||    
T  19535160 aaaatgatatattaaaaaaatttcaagaaattgatttgcgatagaaacattatatttatgatga-ttatatccatgctttaaaattttatttcaaattat 19535258  T
Q  361 aaattc 366  Q
    ||||||    
T  19535259 aaattc 19535264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 436 - 488
Target Start/End: Complemental strand, 31508113 - 31508061
Alignment:
Q  436 gtcataatcactacaactcttccattggaaaaaacaaattgataattatattg 488  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  31508113 gtcataatcactacaactcttcaattagaaaaaacaaattgataattatattg 31508061  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 488
Target Start/End: Complemental strand, 18205203 - 18205151
Alignment:
Q  436 gtcataatcactacaactcttccattggaaaaaacaaattgataattatattg 488  Q
    |||||||||||||||||||||| |||  | |||||||||||||||||||||||    
T  18205203 gtcataatcactacaactcttcaattatataaaacaaattgataattatattg 18205151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 259 - 366
Target Start/End: Original strand, 18440787 - 18440893
Alignment:
Q  259 acaaaatgatatattaaagaaatttcaagaaattgatttgtgatagaaacattatatttatgataatttatatccatgcattaaatttttatttcagatt 358  Q
    |||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||| |||||    
T  18440787 acaaaatgatatattaaa-aattttcaagaaattgatttgtgataggaacattatatttatgataatttatatctatgcattaaaattttattttagatt 18440885  T
Q  359 ataaattc 366  Q
    ||||||||    
T  18440886 ataaattc 18440893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 18440641 - 18440714
Alignment:
Q  150 caactttaaaatcaaaggtaataataataagaactttaaaaatgaagtaaaagttctttggaaactttcgtttttta 226  Q
    ||||||||||| ||||||||||   |||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  18440641 caactttaaaaacaaaggtaat---aataagaactttaaaaatgaagtaaaagttgtttggaaactttagtttttta 18440714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 11845154 - 11845276
Alignment:
Q  14 aatattaaagcgtggctctttaacgcgaatgcagaacaagaacacagccataaagggtcaacaggtagta---ggtacagtagta-----aataaatatc 105  Q
    ||||||||| |||||||||| ||||  ||||||||||||| ||| |||||||||||||||| ||||||||    |||||||||||     | ||||||||    
T  11845154 aatattaaaccgtggctcttcaacgtaaatgcagaacaaggacaaagccataaagggtcaataggtagtaagtagtacagtagtactagtagtaaatatc 11845253  T
Q  106 ttcagagtaaagtcgcttgaagt 128  Q
    ||||||||| | |||||||||||    
T  11845254 ttcagagtacaatcgcttgaagt 11845276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 12517403 - 12517336
Alignment:
Q  14 aatattaaagcgtggctctttaacgcgaatgcagaacaagaacacagccataaagggtcaacaggtag 81  Q
    ||||||||| ||||||| || ||||| ||||| ||||||||||| |||| ||||||||||||||||||    
T  12517403 aatattaaaccgtggcttttcaacgcaaatgctgaacaagaacatagccctaaagggtcaacaggtag 12517336  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 11855539 - 11855579
Alignment:
Q  35 aacgcgaatgcagaacaagaacacagccataaagggtcaac 75  Q
    ||||| |||||||||||||||||||||||||||| ||||||    
T  11855539 aacgcaaatgcagaacaagaacacagccataaagagtcaac 11855579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 259 - 366
Target Start/End: Complemental strand, 31456105 - 31455998
Alignment:
Q  259 acaaaatgatatattaaagaaatttcaagaaattgatttgtgatagaaacatta-tatttatgataatttatatccatgcattaaatttttatttcagat 357  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| |||||||| ||||    
T  31456105 acaaaatgatatattaaa-aaatttcaagaaattgatttgtgataggaacattagtatttatgataatttatatctatgcattaaaattttattttagat 31456007  T
Q  358 tataaattc 366  Q
    |||||||||    
T  31456006 tataaattc 31455998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 31456242 - 31456158
Alignment:
Q  139 atggtttgaaacaactttaaaatcaaaggtaataataataagaactttaaaaatgaagtaaaagttctttggaaactttcgtttttta 226  Q
    |||||| ||| ||||||||||| ||||||||||| |||   ||| ||||||||||||||||||||| |||||||||||| ||||||||    
T  31456242 atggttagaagcaactttaaaaacaaaggtaatattaa---gaattttaaaaatgaagtaaaagttgtttggaaactttagtttttta 31456158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 259 - 366
Target Start/End: Complemental strand, 31837558 - 31837452
Alignment:
Q  259 acaaaatgatatattaaagaaatttcaagaaattgatttgtgatagaaacattatatttatgataatttatatccatgcattaaatttttatttcagatt 358  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||| |||||    
T  31837558 acaaaatgatatattaaa-aaattacaagaaattgatttgtgataggaacattatatttatgataatttatatctatgtattaaaattttattttagatt 31837460  T
Q  359 ataaattc 366  Q
    ||||||||    
T  31837459 ataaattc 31837452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 31837693 - 31837620
Alignment:
Q  150 caactttaaaatcaaaggtaataataataagaactttaaaaatgaagtaaaagttctttggaaactttcgtttttta 226  Q
    ||||||||||| |||||||||||||||   ||||||||||||||||||||||||| |||||||||||| ||||||||    
T  31837693 caactttaaaaacaaaggtaataataa---gaactttaaaaatgaagtaaaagttgtttggaaactttagtttttta 31837620  T

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