View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18987_low_4 (Length: 499)
Name: NF18987_low_4
Description: NF18987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18987_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 41747958 - 41747480
Alignment:
| Q |
1 |
accaaacccgaccttcaatcctcaatttctctcatcagtgctgctggtaacgactatcttaaattttttgttaaaaatgggaggagcaccaaggtaatta |
100 |
Q |
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| T |
41747958 |
accaaacccgaccttcaatcctcaatttctctcgttagtgctgctggtaacgactatcttaaattttttgttaaaaatgggaggagcaccaaggtaatta |
41747859 |
T |
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| Q |
101 |
agtaattagactaattaaatgttcatcgaactcaattcgaaaagtacaattgaatttagtttatacaataaataaaacaatgatcatgtattgtcaatag |
200 |
Q |
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| T |
41747858 |
agtaattagacttattaaatgtccatcgaactcaattcgaaaagtacaattgaatttagtttatacaataaataaagcaatgatcatgtattgtcaataa |
41747759 |
T |
|
| Q |
201 |
tttcatttctcaatacattttgtagggtgtatccaagttcactgcttcacttgtgaagcaattgtcattaaatcttaaacgcattcaaagtttgggaata |
300 |
Q |
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| T |
41747758 |
tttcatttctcaatacattttgtagggtgtatccaagttcactgcttcacttgtgaagcaattgtcattaaatcttaaacgcattcaaagtttgggaata |
41747659 |
T |
|
| Q |
301 |
aataaaatagcaattgtattattagagcctataggatgtttgcctatagcaactgagaatacttcgtatgagaaatgcaatgggactttgaacacggtag |
400 |
Q |
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| T |
41747658 |
aataaaatagcaattgtattattagagcctataggatgtttgcctatagcaactgagaatacttcgtatgagaaatgcaatgggactttgaacacggtag |
41747559 |
T |
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| Q |
401 |
ccatgaatcacaatcacttgttactccaagctgtgaaagaactcaacaaagaaattggaaaatcggttttcgtgacact |
479 |
Q |
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| T |
41747558 |
ccatgaatcacaatcacttgttactccaagctgtggaagaactcaacaaagaaattggaaaatcggttttcgtgacact |
41747480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 237 - 479
Target Start/End: Complemental strand, 41739521 - 41739273
Alignment:
| Q |
237 |
gttcactgcttcacttgtgaagcaattgtcattaaatcttaaacgcattcaaagtttgggaataaataaaatagcaattgtattattagagcctatagga |
336 |
Q |
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||||||||| ||||||||||| ||||| |||| |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
41739521 |
gttcactgcatcacttgtgaatcaattatcatcaaatcttagacgcattcaaagcttgggaataaataaaatagcaattggattattagaacctataggg |
41739422 |
T |
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| Q |
337 |
tgtttgcctatagca------actgagaatacttcgtatgagaaatgcaatgggactttgaacacggtagccatgaatcacaatcacttgttactccaag |
430 |
Q |
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| T |
41739421 |
tgtttgcctatggtaaccgagactgagacaccttcatatgagaaatgcaatgacaatttcaacctatttgccatgaatcacaattacttgttgctccaag |
41739322 |
T |
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| Q |
431 |
ctgtgaaagaactcaacaaagaaattggaaaatcggttttcgtgacact |
479 |
Q |
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| T |
41739321 |
ctgtggaagaacttaacaaggaaatgggaaaatcagttttcgtgacact |
41739273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 41739888 - 41739828
Alignment:
| Q |
35 |
tcagtgctgctggtaacgactatcttaaattttttgttaaaaatgggaggagcaccaaggt |
95 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||| |
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| T |
41739888 |
tcagcgctgctggtaacgactatcttaaattttttgttacaaacggggggagcactaaggt |
41739828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 41733603 - 41733512
Alignment:
| Q |
256 |
aagcaattgtcattaaatcttaaacgcattcaaagtttgggaataaataaaatagcaattgtattattagagcctataggatgtttgcctat |
347 |
Q |
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| T |
41733603 |
aagcaaatgtcattgaatctaaaacgtattcacgagttgggaataaacaaaatagcaattggtttattagagcctattggatgtgtgcctat |
41733512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 341
Target Start/End: Complemental strand, 41758369 - 41758297
Alignment:
| Q |
269 |
taaatcttaaacgcattcaaagtttgggaataaataaaatagcaattgtattattagagcctataggatgttt |
341 |
Q |
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| T |
41758369 |
taaatgttcaacgcatccacaatttgggaataaataaagtagcaattggattattggaaccaattggatgttt |
41758297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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