View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18987_low_5 (Length: 477)
Name: NF18987_low_5
Description: NF18987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18987_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 226 - 472
Target Start/End: Complemental strand, 47178770 - 47178525
Alignment:
| Q |
226 |
tgaagaggggggaaattgtttttaatagagtggcagtattgcccattttacaaccgtctccaaggaagttagaactatgtcccttgaggttacaagatca |
325 |
Q |
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| T |
47178770 |
tgaagaggggggaaattgtttttaatagagtggcactattgcccattttacaaccgtctccaaggaagttagaactatgtcccttgaggttacaagatca |
47178671 |
T |
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| Q |
326 |
agctcttaccagtgagtcgacacttcatagacagaccaaatcaatttaatattggcttatccatgtatgagtttataaaatgaaactgtcttgaatctga |
425 |
Q |
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| T |
47178670 |
agctcttaccagtgagtcgacacttcatagacagaccaaatcaatttaatattggcttatcc-tgtatgagtttataaaatgaaactgtcttgaatctga |
47178572 |
T |
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| Q |
426 |
ttcagatgctatccccgttgagttacaactactgcttctctgctcct |
472 |
Q |
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| T |
47178571 |
ttcagatgctatccccgttgagttacaactactgcttgtctgctcct |
47178525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 47178978 - 47178838
Alignment:
| Q |
17 |
aacaatgtgcttgacgatcataacctgacactataggagaactagtccatcataccttgaaatgcagtcttagaggtgatgctcctgtattaagccgtgt |
116 |
Q |
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| T |
47178978 |
aacaatgtgcttgacgatcataacctgccactataggagaactagtccatcataccttgaaatgcagtcttagaggtgatgcccctgtattaagccgtgt |
47178879 |
T |
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| Q |
117 |
ttatcttaaccacatgaatcccatcttggaatagatttagc |
157 |
Q |
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| T |
47178878 |
ttatcttaaccacatgaatcccatcttggaatagatttagc |
47178838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 334
Target Start/End: Original strand, 46319459 - 46319525
Alignment:
| Q |
268 |
ccattttacaaccgtctccaaggaagttagaactatgtcccttgaggttacaagatcaagctcttac |
334 |
Q |
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| T |
46319459 |
ccattttacaactgtctccaaggggatttgaactttgtcccttgagatcacaagatcaagctcttac |
46319525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 1565857 - 1565813
Alignment:
| Q |
297 |
gaactatgtcccttgaggttacaagatcaagctcttaccagtgag |
341 |
Q |
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| T |
1565857 |
gaactctgtcccttgaggttacaaggtcgagctcttaccactgag |
1565813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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