View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18987_low_8 (Length: 279)
Name: NF18987_low_8
Description: NF18987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18987_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 29144527 - 29144798
Alignment:
| Q |
1 |
tatcagaaccttctctctgtgctagctacctatagattcttttaagaagcactaaatttctttgtttttgttatccaaaagatgaaaagaatggatatct |
100 |
Q |
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| T |
29144527 |
tatcagaaccttctctctgtgctagctacctatagattcttttaagaagcactaaatttctttgtttttgttatccaaaagatgaaaagaatggatatct |
29144626 |
T |
|
| Q |
101 |
tctgtgcttcacaagcctcaacagcaatatgtcttagcatggaacaagcttcatgctcctcttcaaataccattcaacttggaggcaaagtcattgatcg |
200 |
Q |
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| T |
29144627 |
tctgtgcttcacaagcctcaacagcaatatgtcttagcatggaacaagcttcatgctcctcttcaaataccattcaacttggaggcaaagtcattgatcg |
29144726 |
T |
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| Q |
201 |
ccacaaccctattatcaatgattcaagaagaagcacttccaagactatcactgctccatgttcttcatctca |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29144727 |
ccacaaccctattatcaatgattcaagaagaagcacttccaagactatcactgctccatgttcttcttctca |
29144798 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 40453277 - 40453339
Alignment:
| Q |
74 |
tccaaaagatgaaaagaatggatatcttctgtgcttcacaagcctcaacagcaatatgtctta |
136 |
Q |
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||||||| |||||| | || || ||||||||||| ||||||||||||||||| |||||||||| |
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| T |
40453277 |
tccaaaaaatgaaaggcattgaaatcttctgtgcatcacaagcctcaacagccatatgtctta |
40453339 |
T |
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