View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18988_high_1 (Length: 560)
Name: NF18988_high_1
Description: NF18988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18988_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 479; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 19 - 546
Target Start/End: Original strand, 16086903 - 16087442
Alignment:
| Q |
19 |
agttcagcatatttgactgtagattcctttatgactttgctcaaaccataattaattgttggattgt------------gaatatgtaggagttgataca |
106 |
Q |
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| T |
16086903 |
agttcagcatatttgactgtagattcctttatgactttgctcaaaccataaataattgttggtttcttcattttttttggtatatgtaggagttgataca |
16087002 |
T |
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| Q |
107 |
agctttgaagattcaattgttgaatttcatatcaaatcttaaacctcacattgattttctaacaaccaaaattagtgaggtctctcttatgtccatcaat |
206 |
Q |
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| T |
16087003 |
agctttgaagattcaattgttgaatttcatatcaaatcttaaacctcacattgattttctaacaaccaaaattagtgaggtctctcttatgtccatcaat |
16087102 |
T |
|
| Q |
207 |
tctttagtaacaattgttgagaacttccaaaggtcagcaacaccattcattaaggtacagataatctttaatttgaactttgattataatttctaattgg |
306 |
Q |
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| T |
16087103 |
tctttagtaacaattgttgagaacttccaaaggtcagcaacaccattcattaaggtacagataatctttaatttgaactttgattataatttctaattgg |
16087202 |
T |
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| Q |
307 |
tagtttcacctgtattgtatataaccctattatattttacaggaatcatacaactcggctatacaaatgagtacgtcgttgctttttggaattgtgaagt |
406 |
Q |
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| T |
16087203 |
tagtttcacctgtattgtatataaccctattatattttacaggaatcatacaactcggccatacaaatgagtacgtcgttgctttttggaattgtgaagt |
16087302 |
T |
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| Q |
407 |
ggctgaatgatttctttcatttctgtttggaggctgcaagacagtattggactcgttaaataactgaatcatttagatgcaagctattaggctgaagggt |
506 |
Q |
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| T |
16087303 |
ggctgaatgatttctttcatttctgtttggaggctgcaagacagtattggactcgttaaataactgaatcatttagatgcaagctattaggctgaagggt |
16087402 |
T |
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| Q |
507 |
aatgttagcaatgaagacagttattgtagtttgaagttga |
546 |
Q |
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| T |
16087403 |
aatgttagcaatgaagacagttattgtagtttgaagttga |
16087442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 86 - 229
Target Start/End: Original strand, 16439675 - 16439818
Alignment:
| Q |
86 |
gaatatgtaggagttgatacaagctttgaagattcaattgttgaatttcatatcaaatcttaaacctcacattgattttctaacaaccaaaattagtgag |
185 |
Q |
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| T |
16439675 |
gaatatgtaggagtggttacaagctttgaagattcagttgttggatttcatattaaatctgaaacttcacgttgaatttttaactattaaaattagtgag |
16439774 |
T |
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| Q |
186 |
gtctctcttatgtccatcaattctttagtaacaattgttgagaa |
229 |
Q |
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| T |
16439775 |
gtctctcttatgtccatcaatactttagtaccaattgttgagaa |
16439818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 174 - 275
Target Start/End: Original strand, 16080874 - 16080975
Alignment:
| Q |
174 |
aaaattagtgaggtctctcttatgtccatcaattctttagtaacaattgttgagaacttccaaaggtcagcaacaccattcattaaggtacagataatct |
273 |
Q |
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| T |
16080874 |
aaaattagtgaggtctctcttatgaccttcaatacttcaggaacaattgttgaaaaattacaaagatcagcaacaccattcataaaggtacatataaact |
16080973 |
T |
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| Q |
274 |
tt |
275 |
Q |
| |
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|| |
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| T |
16080974 |
tt |
16080975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 101 - 264
Target Start/End: Original strand, 16086213 - 16086376
Alignment:
| Q |
101 |
gatacaagctttgaagattcaattgttgaatttcatatcaaatcttaaacctcacattgattttctaacaaccaaaattagtgaggtctctcttatgtcc |
200 |
Q |
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| T |
16086213 |
gataccagctttgaagaatgaattgttggctttcatgtcaagtctcaaatcttatcttgattttctaacttctaaaatcagtgaggtctctcgtgtatcc |
16086312 |
T |
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| Q |
201 |
atcaattctttagtaacaattgttgagaacttccaaaggtcagcaacaccattcattaaggtac |
264 |
Q |
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| T |
16086313 |
atcaatactttagtcacaatttttcataagtttcaaagttcagcaataccattcatgaaggtac |
16086376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 16438644 - 16438745
Alignment:
| Q |
174 |
aaaattagtgaggtctctcttatgtccatcaattctttagtaacaattgttgagaacttccaaaggtcagcaacaccattcattaaggtacagataatct |
273 |
Q |
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| T |
16438644 |
aaaattagtgaggtct---ttatgtccatcaatactttggtaacaattggcgaaaggttacaaaggtcagcaaaaccatacatgaaggtacatataaact |
16438740 |
T |
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| Q |
274 |
ttaat |
278 |
Q |
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||||| |
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| T |
16438741 |
ttaat |
16438745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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