View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18988_high_4 (Length: 287)
Name: NF18988_high_4
Description: NF18988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18988_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 18150593 - 18150856
Alignment:
| Q |
7 |
gagagaagaagggttggtggtaatgatgaagtttgggttagtttttctattaataggagtaggagaaatcaagatcaagattcttcattcaaccctagat |
106 |
Q |
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| T |
18150593 |
gagagaagaagggttggtggtaacgatgaagtttgggttagtttttctattaataggagtaggagaaatcaagatcaagattcttcattcaaccctagat |
18150692 |
T |
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| Q |
107 |
gagatgatgatgatgaagaagttgataattaattttcttagggttttggttttcaatttgttgaatatatgtatagctgcaaatgcacaaaattgg--tt |
204 |
Q |
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| T |
18150693 |
gagatgatgatgat---gaagttgagaattaattttcttagggttttgtttttcaatttgttgaatatatgtatagctgcaaatgcacaaaattggtttt |
18150789 |
T |
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| Q |
205 |
tcacgtggcaataaataatgannnnnnnaatatccatttaattcttttcatttgtgatgtttaagct |
271 |
Q |
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| T |
18150790 |
tcacgtggcaataaataatgatttttttaatatccatttaattcttttgatttgtgatgtttaagct |
18150856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 18157870 - 18158064
Alignment:
| Q |
21 |
tggtggtaatgatgaagtttgggttagtttttctattaataggagtaggagaaatcaagatcaagattcttcattcaaccctagatgagatgatgatgat |
120 |
Q |
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| T |
18157870 |
tggtggtaacggtgaagtttgggttagtttttctattaataggagtaggagaaatcaagatcaagattcttcatccaaccctaga---gaagatgatgat |
18157966 |
T |
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| Q |
121 |
gaagaagttgataattaa------------ttttcttagggttttggttttcaatttgttgaat-atatgtatagctgcaaatgcacaaaattggttt |
205 |
Q |
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| T |
18157967 |
gatgaagttgagaattaattttgttgttagttttgttaggattttgattttcaagttgttgaatgatatgtataggtgcaaatgcacaaaattggttt |
18158064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 18161581 - 18161655
Alignment:
| Q |
21 |
tggtggtaatgatgaagtttgggttagtttttctattaataggagt---aggagaaatcaagatcaagattcttc |
92 |
Q |
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| T |
18161581 |
tggtggtaacggtgaagtttgggttagtttttctattaacaggagtaggaggagaaatcaagatcaagcttcttc |
18161655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 18161774 - 18161829
Alignment:
| Q |
115 |
gatgatgaagaagttgataattaattttcttagggttttggttttcaatttgttga |
170 |
Q |
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| T |
18161774 |
gatgatgaataagttgagaattaattttgttaggattttggttttcaatttgttga |
18161829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 52897557 - 52897609
Alignment:
| Q |
150 |
ttttggttttcaatttgttgaat-atatgtatagctgcaaatgcacaaaattg |
201 |
Q |
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| T |
52897557 |
ttttggttttcaatttgttgaatgatatgtatcggtgaaaatgcacaaaattg |
52897609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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