View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18988_high_5 (Length: 250)
Name: NF18988_high_5
Description: NF18988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18988_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 55084082 - 55084313
Alignment:
| Q |
1 |
catgaatttcattctcaacggaggtatactatacaaattacaatcctccttatttatattattatatgcttgtttcaccattctcattttcatattttaa |
100 |
Q |
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| T |
55084082 |
catgaatttcattctcaacggaggtatactatacaaattacaatcctccttatttatatt---atatgcttgtttcaccattctcattttcatattttaa |
55084178 |
T |
|
| Q |
101 |
tattgcttgctttcagtgcgtgctctggtttttggattgcacaccctactttttctttttcatcctaaggttaattcattcattttgcatgctatgcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55084179 |
tattgcttgctttcagtgcgtgctctggttttcggattgcacaccctactttttctttttcatcctaaggttaattcattcattttgcatgctatgcaac |
55084278 |
T |
|
| Q |
201 |
ccaccctcatattaatttaatttgactattatcat |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
55084279 |
ccaccctcatattaatttaatttgactattatcat |
55084313 |
T |
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