View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18988_low_10 (Length: 244)
Name: NF18988_low_10
Description: NF18988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18988_low_10 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: scaffold0150 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 10854 - 10628
Alignment:
| Q |
1 |
tatgttgtaaacaacacaaaatattcatggacactttaattgttgatctaaacaccaaactggttgtagtttactacacttgggaaaaactaatcatatt |
100 |
Q |
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| T |
10854 |
tatgttgtaaacaacacaaaatattcatggacactttaattgttgatctaaacaccaaactggctgtagtttactacacttgggaaaaactaatcatatt |
10755 |
T |
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| Q |
101 |
cagggttcgaaacaattgggctaaatcaatcgttgactcaactacatagacataaggatggtgaatggtgttgcgtattgacttctatcgaccaactcag |
200 |
Q |
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| T |
10754 |
cagggttcgaaacaattgggctaaatcaatcgttgactcaactacatagacataaggatggtgaatggtgttgcgtattgacttctatcgaccaactcag |
10655 |
T |
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| Q |
201 |
ctgaaaccgtccagatcacccagatga |
227 |
Q |
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||||||| |||||||||||| |||||| |
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| T |
10654 |
ctgaaactgtccagatcacctagatga |
10628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 17018690 - 17018916
Alignment:
| Q |
1 |
tatgttgtaaacaacacaaaatattcatggacactttaattgttgatctaaacaccaaactggttgtagtttactacacttgggaaaaactaatcatatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17018690 |
tatgttgtaaacaacacaaaatattcatggacactttaattgttgatctaaacaccaaactggttgtagtttactacacttgggaaaaactaaacatatt |
17018789 |
T |
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| Q |
101 |
cagggttcgaaacaattgggctaaatcaatcgttgactcaactacatagacataaggatggtgaatggtgttgcgtattgacttctatcgaccaactcag |
200 |
Q |
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| T |
17018790 |
cacggtttgaaacagctgggccaaatcaatcgtcgactcaactacatagacacaaggatggtgaatggtgttgcgtattgacttctatcgaccaactcag |
17018889 |
T |
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| Q |
201 |
ctgaaaccgtccagatcacccagatga |
227 |
Q |
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| T |
17018890 |
ctgaaagcgtccagatcacctagatga |
17018916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 17549127 - 17549353
Alignment:
| Q |
1 |
tatgttgtaaacaacacaaaatattcatggacactttaattgttgatctaaacaccaaactggttgtagtttactacacttgggaaaaactaatcatatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
17549127 |
tatgttgtaaacaacacaaaatattcatggacactttaattgttgatctaaacaccaaactggttgtagtttactacacttgggaaaaactaaacatatt |
17549226 |
T |
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| Q |
101 |
cagggttcgaaacaattgggctaaatcaatcgttgactcaactacatagacataaggatggtgaatggtgttgcgtattgacttctatcgaccaactcag |
200 |
Q |
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|| |||| |||||| ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17549227 |
cacggtttgaaacagctgggccaaatcaatcgtcgactcaactacatagacacaaggatggtgaatggtgttgcgtattgacttctatcgaccaactcag |
17549326 |
T |
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| Q |
201 |
ctgaaaccgtccagatcacccagatga |
227 |
Q |
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|||||| ||||||||||||| |||||| |
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| T |
17549327 |
ctgaaagcgtccagatcacctagatga |
17549353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 26204185 - 26204260
Alignment:
| Q |
3 |
tgttgtaaacaacacaaaatattcatggacactttaattgttgatctaaacaccaaactggttgtagtttactaca |
78 |
Q |
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|||||||||| |||| ||||| |||| | ||||| ||| ||||||| ||||||||||| ||||||||||||||| |
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| T |
26204185 |
tgttgtaaaccacaccaaataatcataggcacttcaatcattgatctgaacaccaaactaattgtagtttactaca |
26204260 |
T |
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