View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18988_low_11 (Length: 227)
Name: NF18988_low_11
Description: NF18988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18988_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 25819088 - 25819304
Alignment:
| Q |
5 |
gcggagccatagctttattgagtgcaatagcagggtgagctttaattctttgattcctacctcagttgccatggagccttctactttctctggttggggc |
104 |
Q |
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| T |
25819088 |
gcggagccatagctttattgagtgcaatagcagggtgagctttaattctttgattcctacctcagttgccatggagccttctactttctctggttggggt |
25819187 |
T |
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| Q |
105 |
tcccttgatggaaaattagactggtccatctgcggctatgaactcaataaaacgaggaaatcttattattttggctttcgaaacagaagtagcacttcaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25819188 |
tcccttgatggaaaattagactggtccatctgcggctatgaactcaataaaatgaggaaatcttattcttttggctttcgaaacagaagtagcacttcaa |
25819287 |
T |
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| Q |
205 |
ctgctgcatctaatatc |
221 |
Q |
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||||||||||||||||| |
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| T |
25819288 |
ctgctgcatctaatatc |
25819304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 25813479 - 25813559
Alignment:
| Q |
61 |
ctacctcagttgccatggagccttctactttctctggttggggctcccttgatggaaaattagactggtccatctgcggct |
141 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||| |||||| |
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| T |
25813479 |
ctacctcagttgccatggagccttctattttctctggttggggctcgcctgatggaaaattagactggtccatccgcggct |
25813559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 25813556 - 25813584
Alignment:
| Q |
177 |
ggctttcgaaacagaagtagcacttcaac |
205 |
Q |
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| T |
25813556 |
ggctttcgaaacagaagtagcacttcaac |
25813584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 66 - 205
Target Start/End: Original strand, 33648848 - 33648987
Alignment:
| Q |
66 |
tcagttgccatggagccttctactttctctggttggggctcccttgatggaaaattagactggtccatctgcggctatgaactcaataaaacgaggaaat |
165 |
Q |
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|||||||||||||| |||||| | |||||||||| |||||| | ||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||| |
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| T |
33648848 |
tcagttgccatggaaccttctgccttctctggttcgggctctcctgatggaaaattagactggtccatccgcggcgatgaactcaataaaatgaggaaat |
33648947 |
T |
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| Q |
166 |
cttattattttggctttcgaaacagaagtagcacttcaac |
205 |
Q |
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|||||| ||| || ||||| |||||||||||||||||||| |
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| T |
33648948 |
cttattctttcggatttcgcaacagaagtagcacttcaac |
33648987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 65 - 205
Target Start/End: Original strand, 33648688 - 33648828
Alignment:
| Q |
65 |
ctcagttgccatggagccttctactttctctggttggggctcccttgatggaaaattagactggtccatctgcggctatgaactcaataaaacgaggaaa |
164 |
Q |
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||||||||||||||| |||||| | ||||||||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||||||| | ||||||| |
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| T |
33648688 |
ctcagttgccatggaaccttctgccttctctggttggggctctcctgatggaaaattagactggtccatccgcggcaatgaactcaataacatgaggaaa |
33648787 |
T |
|
| Q |
165 |
tcttattattttggctttcgaaacagaagtagcacttcaac |
205 |
Q |
| |
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||| || ||| ||||||| ||||||||||||||||||||| |
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| T |
33648788 |
tctatttctttcggctttcaaaacagaagtagcacttcaac |
33648828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 36224540 - 36224427
Alignment:
| Q |
65 |
ctcagttgccatggagccttctactttctctggttggggctcccttgatggaaaattagactggtccatctgcggctatgaactcaataaaacgaggaaa |
164 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||| | ||||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||| |
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| T |
36224540 |
ctcagttgccatggaaccttctaccttctctggttggggctctcctgatggaaaattagactagtccatccgcggcgatgaactcaataaaatgaggaaa |
36224441 |
T |
|
| Q |
165 |
tcttattattttgg |
178 |
Q |
| |
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||||||| |||||| |
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| T |
36224440 |
tcttattcttttgg |
36224427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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