View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18988_low_2 (Length: 461)

Name: NF18988_low_2
Description: NF18988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18988_low_2
NF18988_low_2
[»] scaffold0150 (2 HSPs)
scaffold0150 (13-461)||(10885-11328)
scaffold0150 (13-92)||(16740-16818)
[»] chr8 (5 HSPs)
chr8 (15-460)||(17018206-17018658)
chr8 (15-460)||(17548643-17549095)
chr8 (223-285)||(17777651-17777713)
chr8 (223-268)||(8541437-8541482)
chr8 (386-454)||(2287723-2287791)
[»] chr4 (9 HSPs)
chr4 (342-429)||(9074413-9074500)
chr4 (223-274)||(47449927-47449978)
chr4 (47-117)||(9075639-9075708)
chr4 (342-431)||(52431989-52432078)
chr4 (354-432)||(18308978-18309057)
chr4 (354-432)||(18406957-18407036)
chr4 (418-459)||(5263116-5263157)
chr4 (411-448)||(37397340-37397377)
chr4 (222-278)||(52431858-52431914)
[»] chr6 (4 HSPs)
chr6 (378-459)||(32427747-32427828)
chr6 (342-429)||(32419864-32419951)
chr6 (342-429)||(32425705-32425792)
chr6 (379-426)||(33680732-33680779)
[»] chr1 (1 HSPs)
chr1 (43-112)||(15249687-15249755)
[»] scaffold0039 (1 HSPs)
scaffold0039 (346-459)||(113011-113123)
[»] chr3 (2 HSPs)
chr3 (46-117)||(25232505-25232575)
chr3 (26-78)||(4143791-4143843)
[»] chr2 (1 HSPs)
chr2 (341-424)||(32475159-32475242)
[»] scaffold0016 (1 HSPs)
scaffold0016 (36-70)||(106741-106775)
[»] chr7 (1 HSPs)
chr7 (390-451)||(24459528-24459589)
[»] chr5 (3 HSPs)
chr5 (42-70)||(17134837-17134865)
chr5 (55-112)||(26203772-26203825)
chr5 (411-459)||(27689812-27689860)


Alignment Details
Target: scaffold0150 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 13 - 461
Target Start/End: Complemental strand, 11328 - 10885
Alignment:
Q  13 aatatagtaagctttttagtaagaaaggtcaacagtggaaacacattgtagaagaaaatagaaggaaacaatgtgagatgcatggaatgagaatttgtga 112  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||    
T  11328 aatatagtaagctttct-gtaagaaaggtcaacggtggaaacacattgtagaagaaaatagaaggaaacaatgtgagatg----gaatgagaatttgtga 11234  T
Q  113 gggatatgtggacatttataggggtttgttaagggtgatgcatatagtgtaacaatccattaattatagacaaaatgtggtcaaactagtctgattagtg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11233 gggatatgtggacatttataggggtttgttaagggtgatgcatatagtgtaacagtccattaattatagacaaaatgtggtcaaactagtctgattagtg 11134  T
Q  213 agggggcccaaaaaatgtgttcaatgagttagtcttgttgagcaagtcaccttccacactctgaacgggttcagactttataatttgaagccatttgaaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11133 agggggcccaaaaaatgtgttcaatgagttagtcttgttgagcaagtcaccttccacactctgaacgggttcagactttataatttgaagccatttgaaa 11034  T
Q  313 aatatacgaattatataattcaaattagtttaaaactcgtgctttgtagggtgcaggacaattccaattatataatccgaaccagtcaagtacatgaatt 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  11033 aatatacgaattatataattcaaattagtttaaaactcgtgctttgtagggtgcaggacaattctaattatataatctgaaccagtcaagtacatgaatt 10934  T
Q  413 ttttgtggtccacattgcactgaatgtttatgtggtccacgatgcacta 461  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  10933 ttttgttgtccacattgcactgaatgtttatgtggtcctcgatgcacta 10885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 16818 - 16740
Alignment:
Q  13 aatatagtaagctttttagtaagaaaggtcaacagtggaaacacattgtagaagaaaatagaaggaaacaatgtgagatg 92  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16818 aatatagtaagctttct-gtaagaaaggtcaacggtggaaacacattgtagaagaaaatagaaggaaacaatgtgagatg 16740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 15 - 460
Target Start/End: Original strand, 17018206 - 17018658
Alignment:
Q  15 tatagtaagctttttagtaagaaaggtcaacagtggaaacacattgtagaagaaaatagaaggaaacaatgtgagatgcatggaatgagaatttgtgagg 114  Q
    |||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||    |||| ||||||||||| |    
T  17018206 tatagtaaacttttt-gtaagaaaggtcaacggtggaaacacattgtagaagaaaatagatggaaagaatgtgagatg----gaataagaatttgtgaag 17018300  T
Q  115 gatatgtggacatttataggggtttgttaagggtgatgcatatagtgtaacaatccattaatt-atagacaaaatgtggtcaaactagtctgattagtga 213  Q
    | |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  17018301 ggtatgtggatatttataggggtttgttaagggtgatgcatatagtgtaacagtccattaatttatagacaaaatgttgtcaaactagtctgactagtga 17018400  T
Q  214 gggggcccaaaaaatgtgttcaatgagttagtcttgttgagcaagtcaccttccacactctgaacgggttcagactttataatttgaagccatttgaaaa 313  Q
     ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17018401 aggggcccaaaaaatgtgttcaatgagtcagtcttgttgagcaagtcaccttccacactctgaacgggttcagactttataatttgaagtcatttgaaaa 17018500  T
Q  314 atatacgaattatataattcaaattagt-----------ttaaaactcgtgctttgtagggtgcaggacaattccaattatataatccgaaccagtcaag 402  Q
    |||| || ||||||||||||||| ||||           ||||||||||||||||||| |||| ||||||||||  ||||||||||| ||||||||||||    
T  17018501 atattcggattatataattcaaaatagtttaaaactgtgttaaaactcgtgctttgtaaggtgtaggacaattcatattatataatctgaaccagtcaag 17018600  T
Q  403 tacatgaattttttgtggtccacattgcactgaatgtttatgtggtccacgatgcact 460  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17018601 tacatgaattttttgtggtccacattgcactaaatgtttatgtggtccacgatgcact 17018658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 15 - 460
Target Start/End: Original strand, 17548643 - 17549095
Alignment:
Q  15 tatagtaagctttttagtaagaaaggtcaacagtggaaacacattgtagaagaaaatagaaggaaacaatgtgagatgcatggaatgagaatttgtgagg 114  Q
    |||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||    |||| ||||||||||| |    
T  17548643 tatagtaaacttttt-gtaagaaaggtcaacggtggaaacacattgtagaagaaaatagatggaaagaatgtgagatg----gaataagaatttgtgaag 17548737  T
Q  115 gatatgtggacatttataggggtttgttaagggtgatgcatatagtgtaacaatccattaatt-atagacaaaatgtggtcaaactagtctgattagtga 213  Q
    | |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  17548738 ggtatgtggatatttataggggtttgttaagggtgatgcatatagtgtaacagtccattaatttatagacaaaatgttgtcaaactagtctgactagtga 17548837  T
Q  214 gggggcccaaaaaatgtgttcaatgagttagtcttgttgagcaagtcaccttccacactctgaacgggttcagactttataatttgaagccatttgaaaa 313  Q
     ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17548838 aggggcccaaaaaatgtgttcaatgagtcagtcttgttgagcaagtcaccttccacactctgaacgggttcagactttataatttgaagtcatttgaaaa 17548937  T
Q  314 atatacgaattatataattcaaattagt-----------ttaaaactcgtgctttgtagggtgcaggacaattccaattatataatccgaaccagtcaag 402  Q
    |||| || ||||||||||||||| ||||           ||||||||||||||||||| |||| ||||||||||  ||||||||||| ||||||||||||    
T  17548938 atattcggattatataattcaaaatagtttaaaactgtgttaaaactcgtgctttgtaaggtgtaggacaattcatattatataatctgaaccagtcaag 17549037  T
Q  403 tacatgaattttttgtggtccacattgcactgaatgtttatgtggtccacgatgcact 460  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17549038 tacatgaattttttgtggtccacattgcactaaatgtttatgtggtccacgatgcact 17549095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 17777713 - 17777651
Alignment:
Q  223 aaaaatgtgttcaatgagttagtcttgttgagcaagtcaccttccacactctgaacgggttca 285  Q
    ||||| ||||| ||||||| ||| ||||||||||||||| | |||||| ||||||| ||||||    
T  17777713 aaaaacgtgttgaatgagtcagtattgttgagcaagtcatcgtccacattctgaactggttca 17777651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 8541437 - 8541482
Alignment:
Q  223 aaaaatgtgttcaatgagttagtcttgttgagcaagtcaccttcca 268  Q
    |||||||||||| |||||||| ||||||||||||||| ||| ||||    
T  8541437 aaaaatgtgttccatgagttactcttgttgagcaagtaaccgtcca 8541482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 2287791 - 2287723
Alignment:
Q  386 aatccgaaccagtcaagtacatgaattttttgtggtccacattgcactgaatgtttatgtggtccacga 454  Q
    ||||| ||||| |||||||||||| |||| ||||||||||||| ||| ||   ||||| ||||||||||    
T  2287791 aatccaaaccaatcaagtacatgatttttctgtggtccacattacaccgacaatttatatggtccacga 2287723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 429
Target Start/End: Complemental strand, 9074500 - 9074413
Alignment:
Q  342 ttaaaactcgtgctttgtagggtgcaggacaattccaattatataatccgaaccagtcaagtacatgaattttttgtggtccacattg 429  Q
    |||||||| || |||||||||||| ||||||| || | |||||||||||||| | ||||| |||| || |||| ||||||||||||||    
T  9074500 ttaaaacttgtactttgtagggtgaaggacaaatcaacttatataatccgaatctgtcaaatacaagatttttatgtggtccacattg 9074413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 47449978 - 47449927
Alignment:
Q  223 aaaaatgtgttcaatgagttagtcttgttgagcaagtcaccttccacactct 274  Q
    |||||||||| ||||||||||||||||||||| |||| ||| ||||||||||    
T  47449978 aaaaatgtgtgcaatgagttagtcttgttgagaaagtaaccatccacactct 47449927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 9075708 - 9075639
Alignment:
Q  47 gtggaaacacattgtagaagaaaatagaaggaaacaatgtgagatgcatggaatgagaatttgtgagggat 117  Q
    |||||| ||||||||||||||||| ||||||| | ||||||||||| ||| |||||||||| |||| ||||    
T  9075708 gtggaagcacattgtagaagaaaagagaaggagaaaatgtgagatg-atgaaatgagaattcgtgaaggat 9075639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 431
Target Start/End: Original strand, 52431989 - 52432078
Alignment:
Q  342 ttaaaactcgtgctttgtagggtgcaggacaattccaattatataatccgaaccagtcaagtacatgaattttttgtggtccacattgca 431  Q
    ||||||||||| ||||||||| ||  ||| | |||  ||| |||||||||||||  | ||||||| || |||||||||||||||||||||    
T  52431989 ttaaaactcgtactttgtaggatgatggaaatttcatattttataatccgaacctttgaagtacaagatttttttgtggtccacattgca 52432078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 432
Target Start/End: Complemental strand, 18309057 - 18308978
Alignment:
Q  354 ctttgtagggtgcaggacaattccaattatataatccgaaccagtcaagtacatgaattttt-tgtggtccacattgcac 432  Q
    |||||||||||| |||||| ||| | || |||||||  |||| || |||||||||||||||| |||| ||||||||||||    
T  18309057 ctttgtagggtgaaggacatttcaagttttataatctaaacctgtaaagtacatgaatttttatgtgttccacattgcac 18308978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 432
Target Start/End: Complemental strand, 18407036 - 18406957
Alignment:
Q  354 ctttgtagggtgcaggacaattccaattatataatccgaaccagtcaagtacatgaattttt-tgtggtccacattgcac 432  Q
    |||||||||||| |||||| ||| | || |||||||  |||| || |||||||||||||||| |||| ||||||||||||    
T  18407036 ctttgtagggtgaaggacatttcaagttttataatctaaacctgtaaagtacatgaatttttatgtgttccacattgcac 18406957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Original strand, 5263116 - 5263157
Alignment:
Q  418 tggtccacattgcactgaatgtttatgtggtccacgatgcac 459  Q
    ||||||||||||||||||  | ||||||||||||||||||||    
T  5263116 tggtccacattgcactgacagattatgtggtccacgatgcac 5263157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Original strand, 37397340 - 37397377
Alignment:
Q  411 ttttttgtggtccacattgcactgaatgtttatgtggt 448  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  37397340 ttttgtgtggtccacattgcactgaaagtttatgtggt 37397377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 52431858 - 52431914
Alignment:
Q  222 aaaaaatgtgttcaatgagttagtcttgttgagcaagtcaccttccacactctgaac 278  Q
    |||||| |||| |||||| |||||||||||||||||| ||||   ||||||||||||    
T  52431858 aaaaaaagtgtccaatgacttagtcttgttgagcaagccaccgctcacactctgaac 52431914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 459
Target Start/End: Original strand, 32427747 - 32427828
Alignment:
Q  378 aattatataatccgaaccagtcaagtacatgaattttttgtggtccacattgcactgaatgtttatgtggtccacgatgcac 459  Q
    ||||||||| ||||||||||| |||||||||| |||| ||||||||| ||||||| ||   ||||| |||||||||| ||||    
T  32427747 aattatatattccgaaccagttaagtacatgatttttctgtggtccatattgcaccgacaatttatttggtccacgacgcac 32427828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 429
Target Start/End: Original strand, 32419864 - 32419951
Alignment:
Q  342 ttaaaactcgtgctttgtagggtgcaggacaattccaattatataatccgaaccagtcaagtacatgaattttttgtggtccacattg 429  Q
    ||||||||||  ||||||||| ||   |||||||| ||||||||||||||||| ||||||| |||  | |||| ||||||| ||||||    
T  32419864 ttaaaactcgcactttgtaggatgagagacaattcaaattatataatccgaactagtcaagcacacaatttttatgtggtctacattg 32419951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 429
Target Start/End: Original strand, 32425705 - 32425792
Alignment:
Q  342 ttaaaactcgtgctttgtagggtgcaggacaattccaattatataatccgaaccagtcaagtacatgaattttttgtggtccacattg 429  Q
    ||||||||||  ||||||||| ||   |||||||| ||||||||||||||||| ||||||| |||  | |||| ||||||| ||||||    
T  32425705 ttaaaactcgcactttgtaggatgagagacaattcaaattatataatccgaactagtcaagcacacaatttttatgtggtctacattg 32425792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 426
Target Start/End: Original strand, 33680732 - 33680779
Alignment:
Q  379 attatataatccgaaccagtcaagtacatgaattttttgtggtccaca 426  Q
    ||||||||||| ||||||||||||||||| | |||| |||||||||||    
T  33680732 attatataatctgaaccagtcaagtacataatttttctgtggtccaca 33680779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 15249755 - 15249687
Alignment:
Q  43 aacagtggaaacacattgtagaagaaaatagaaggaaacaatgtgagatgcatggaatgagaatttgtga 112  Q
    |||||||||| ||||||||||||||||| ||||| ||| ||||||||||| ||| |||||||| ||||||    
T  15249755 aacagtggaagcacattgtagaagaaaagagaagaaaagaatgtgagatg-atgaaatgagaaattgtga 15249687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 459
Target Start/End: Complemental strand, 113123 - 113011
Alignment:
Q  346 aactcgtgctttgtagggtgcaggacaattccaattatataatccgaaccagtcaagtacatgaattttttgtggtccacattgcactgaatgtttatgt 445  Q
    ||||||| |||||||||||| |||||||||    |||||||||  |||   ||||||||||||| |||| |||||| ||| |||||| |||  ||| |||    
T  113123 aactcgtactttgtagggtgaaggacaatttagcttatataatttgaatatgtcaagtacatgatttttctgtggttcacgttgcaccgaa-atttttgt 113025  T
Q  446 ggtccacgatgcac 459  Q
    ||||||||||||||    
T  113024 ggtccacgatgcac 113011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 25232505 - 25232575
Alignment:
Q  46 agtggaaacacattgtagaagaaaatagaaggaaacaatgtgagatgcatggaatgagaatttgtgagggat 117  Q
    ||||||| ||||||||| ||||||| | ||||| | ||||||||||| |||| |||||||||||||| ||||    
T  25232505 agtggaagcacattgtaaaagaaaagaaaaggagataatgtgagatg-atggtatgagaatttgtgaaggat 25232575  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 4143791 - 4143843
Alignment:
Q  26 ttttagtaagaaaggtcaacagtggaaacacattgtagaagaaaatagaagga 78  Q
    |||| ||| ||||||||||| |||||| ||||||| ||||||||| |||||||    
T  4143791 ttttggtatgaaaggtcaacggtggaagcacattgcagaagaaaagagaagga 4143843  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 424
Target Start/End: Complemental strand, 32475242 - 32475159
Alignment:
Q  341 tttaaaactcgtgctttgtagggtgcaggacaattccaattatataatccgaaccagtcaagtacatgaattttttgtggtcca 424  Q
    |||||||||||| |||  ||||||| | ||||||||  ||||||||| | ||||  ||||||||| ||| ||||||||||||||    
T  32475242 tttaaaactcgtacttcatagggtgaaagacaattcatattatataacctgaacttgtcaagtacgtgatttttttgtggtcca 32475159  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 106741 - 106775
Alignment:
Q  36 aaaggtcaacagtggaaacacattgtagaagaaaa 70  Q
    ||||||||||||||||| |||||||||||||||||    
T  106741 aaaggtcaacagtggaagcacattgtagaagaaaa 106775  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 451
Target Start/End: Complemental strand, 24459589 - 24459528
Alignment:
Q  390 cgaaccagtcaagtacatgaattttttgtggtccacattgcactgaatgtttatgtggtcca 451  Q
    |||||||||||||||||||| |||| | ||||||| ||||||| ||   |||||||||||||    
T  24459589 cgaaccagtcaagtacatgatttttctatggtccatattgcacagacaatttatgtggtcca 24459528  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 17134865 - 17134837
Alignment:
Q  42 caacagtggaaacacattgtagaagaaaa 70  Q
    |||||||||||||||||||||||||||||    
T  17134865 caacagtggaaacacattgtagaagaaaa 17134837  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 26203772 - 26203825
Alignment:
Q  55 acattgtagaagaaaatagaaggaaacaatgtgagatgcatggaatgagaatttgtga 112  Q
    |||||||||||||||| ||||||| | ||||||||    |||||||||||||||||||    
T  26203772 acattgtagaagaaaagagaaggatagaatgtgag----atggaatgagaatttgtga 26203825  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 459
Target Start/End: Original strand, 27689812 - 27689860
Alignment:
Q  411 ttttttgtggtccacattgcactgaatgtttatgtggtccacgatgcac 459  Q
    |||| ||||||||||||||||||||  |||| |||||||||||| ||||    
T  27689812 ttttgtgtggtccacattgcactgacagtttttgtggtccacgacgcac 27689860  T

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