View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18988_low_3 (Length: 367)
Name: NF18988_low_3
Description: NF18988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18988_low_3 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 17867837 - 17867941
Alignment:
| Q |
18 |
atgaagaaactatttttgggacctcatttatccatgcaaaaaattgacattcttctcatacctatttttcgaataattttgctttgaaaaatcatcccac |
117 |
Q |
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| T |
17867837 |
atgaagaaactatttttgggacctcatttatccatccaaaaaattgacattcttctcatacctatttttcaaataatattgctttgcaaaatcatcccac |
17867936 |
T |
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| Q |
118 |
acact |
122 |
Q |
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||||| |
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| T |
17867937 |
acact |
17867941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 24784089 - 24784027
Alignment:
| Q |
105 |
aaaatcatcccacacactaggaaaagctttcaataaatgagaatgataaggttgagagattat |
167 |
Q |
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| T |
24784089 |
aaaatcatcccacaccctagtaagagctttccataaaggagaatcataaggttgagagtttat |
24784027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 35196903 - 35196965
Alignment:
| Q |
105 |
aaaatcatcccacacactaggaaaagctttcaataaatgagaatgataaggttgagagattat |
167 |
Q |
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| T |
35196903 |
aaaatcatcccacaccctagtaagagctttccataaaggagaatcataaggttgagagtttat |
35196965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 110204 - 110266
Alignment:
| Q |
105 |
aaaatcatcccacacactaggaaaagctttcaataaatgagaatgataaggttgagagattat |
167 |
Q |
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| T |
110204 |
aaaatcatcccacaccctagtaagagctttccataaaggagaatcataaggttgagagtttat |
110266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 7796804 - 7796742
Alignment:
| Q |
105 |
aaaatcatcccacacactaggaaaagctttcaataaatgagaatgataaggttgagagattat |
167 |
Q |
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||||||||||||||| |||| || ||||||| ||||| |||||| ||||||||||||| |||| |
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| T |
7796804 |
aaaatcatcccacaccctagtaagagctttccataaaggagaatcataaggttgagagtttat |
7796742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 8056253 - 8056315
Alignment:
| Q |
105 |
aaaatcatcccacacactaggaaaagctttcaataaatgagaatgataaggttgagagattat |
167 |
Q |
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||||||||||||||| |||| || ||||||| ||||| |||||| ||||||||||||| |||| |
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| T |
8056253 |
aaaatcatcccacaccctagtaagagctttccataaaggagaatcataaggttgagagtttat |
8056315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 33700333 - 33700395
Alignment:
| Q |
105 |
aaaatcatcccacacactaggaaaagctttcaataaatgagaatgataaggttgagagattat |
167 |
Q |
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||||||||||||||| |||| || ||||||| ||||| |||||| ||||||||||||| |||| |
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| T |
33700333 |
aaaatcatcccacaccctagtaagagctttccataaaggagaatcataaggttgagagtttat |
33700395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 46020297 - 46020359
Alignment:
| Q |
105 |
aaaatcatcccacacactaggaaaagctttcaataaatgagaatgataaggttgagagattat |
167 |
Q |
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||||||||||||||| |||| || ||||||| ||||| |||||| ||||||||||||| |||| |
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| T |
46020297 |
aaaatcatcccacaccctagtaagagctttccataaaggagaatcataaggttgagagtttat |
46020359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 49573933 - 49573995
Alignment:
| Q |
105 |
aaaatcatcccacacactaggaaaagctttcaataaatgagaatgataaggttgagagattat |
167 |
Q |
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||||||||||||||| |||| || ||||||| ||||| |||||| ||||||||||||| |||| |
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| T |
49573933 |
aaaatcatcccacaccctagtaagagctttccataaaggagaatcataaggttgagagtttat |
49573995 |
T |
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