View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18988_low_6 (Length: 291)
Name: NF18988_low_6
Description: NF18988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18988_low_6 |
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| [»] scaffold0154 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 6222042 - 6221769
Alignment:
| Q |
1 |
ccattgtatatgtcaccagaagcggtgaacgagagtgtttatgaatcaacggcagatatatgggctcttggttgcgctattgtggagatggctacgggta |
100 |
Q |
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| T |
6222042 |
ccattgtatatgtcaccagaagcggtgaacgagagtgtttatgaatcaccggcagatatatgggctcttggttgcgctattgtggagatggctacgggta |
6221943 |
T |
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| Q |
101 |
aacatgcatggaatgtaagcagcggttcaaatatgtggtcgttgttaattcgaattggggcagaagacgaatcaccgttgattccagatgaattatcaca |
200 |
Q |
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| T |
6221942 |
aacatgcatggaatgtaagcagcggttcaaatatgtggtcgttgttaattcgaattggggcagaagacgaatcaccgttgattccagatgaattatcaca |
6221843 |
T |
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| Q |
201 |
agtcggaaaagattttctcgaaaagtgtttcatcaaggatccttcgaaaagatggacggcagagatgcttttga |
274 |
Q |
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| T |
6221842 |
agtcggaaaagattttctcgaaaagtgtttcatcaaggatccttcaaaaagatggacggcagagatgcttttga |
6221769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 269
Target Start/End: Complemental strand, 6232644 - 6232556
Alignment:
| Q |
181 |
attccagatgaattatcacaagtcggaaaagattttctcgaaaagtgtttcatcaaggatccttcgaaaagatggacggcagagatgct |
269 |
Q |
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| T |
6232644 |
attccagaggaattatcacaagaaggaaaagattttttagaaaagtgtttcattaaggatcctttgagaagatggacagcagatatgct |
6232556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 6232810 - 6232729
Alignment:
| Q |
9 |
tatgtcaccagaagcggtgaacgagagtgtttatgaatcaacggcagatatatgggctcttggttgcgctattgtggagatg |
90 |
Q |
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| T |
6232810 |
tatgtcaccagaagcagtgaatgatagtgtgtatgaatcgtcagccgatatatgggctcttggttgcgccgtcgtggagatg |
6232729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 274
Target Start/End: Complemental strand, 14658 - 14510
Alignment:
| Q |
126 |
ttcaaatatgtggtcgttgttaattcgaattggggcagaagacgaatcaccgttgattccagatgaattatcacaagtcggaaaagattttctcgaaaag |
225 |
Q |
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| T |
14658 |
ttcaaatatgtggtcgttgttgcttcagattggtgccggagaagaatcgccgttgatacccgaagaattatcgaaagaaggaaaagattttgttgagaag |
14559 |
T |
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| Q |
226 |
tgtttcatcaaggatccttcgaaaagatggacggcagagatgcttttga |
274 |
Q |
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| T |
14558 |
tgttttgtgaaagatccaagaaaaagatggacggctgagatgcttttga |
14510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 230
Target Start/End: Complemental strand, 24078 - 23974
Alignment:
| Q |
126 |
ttcaaatatgtggtcgttgttaattcgaattggggcagaagacgaatcaccgttgattccagatgaattatcacaagtcggaaaagattttctcgaaaag |
225 |
Q |
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||||||||||||||||||||| ||| ||||| || | ||| ||||| |||||||| || || |||||||| ||| |||||||||||| | || ||| |
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| T |
24078 |
ttcaaatatgtggtcgttgttgcttcagattggtgccggagaagaatcgccgttgatacccgaagaattatcgaaagaaggaaaagattttgttgagaag |
23979 |
T |
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| Q |
226 |
tgttt |
230 |
Q |
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| T |
23978 |
tgttt |
23974 |
T |
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