View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18988_low_9 (Length: 245)

Name: NF18988_low_9
Description: NF18988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18988_low_9
NF18988_low_9
[»] chr8 (11 HSPs)
chr8 (6-65)||(13700130-13700189)
chr8 (6-65)||(22897948-22898007)
chr8 (6-65)||(13811615-13811674)
chr8 (5-57)||(33213687-33213739)
chr8 (25-65)||(37590031-37590071)
chr8 (26-71)||(9530636-9530681)
chr8 (103-159)||(17867963-17868020)
chr8 (25-65)||(2246715-2246755)
chr8 (25-65)||(14505827-14505867)
chr8 (25-65)||(15990404-15990444)
chr8 (5-57)||(28417644-28417696)
[»] chr3 (16 HSPs)
chr3 (6-65)||(42626132-42626191)
chr3 (6-62)||(12526585-12526641)
chr3 (6-65)||(16877964-16878023)
chr3 (5-71)||(54561492-54561558)
chr3 (27-72)||(29372939-29372984)
chr3 (25-65)||(16739424-16739464)
chr3 (6-70)||(18765582-18765646)
chr3 (21-63)||(8555691-8555733)
chr3 (27-65)||(14485652-14485690)
chr3 (25-65)||(6006029-6006069)
chr3 (25-65)||(17790258-17790298)
chr3 (25-65)||(19098700-19098740)
chr3 (25-65)||(31228344-31228384)
chr3 (25-65)||(35906926-35906966)
chr3 (29-65)||(53394944-53394980)
chr3 (29-65)||(53437645-53437681)
[»] chr7 (15 HSPs)
chr7 (1-66)||(42510030-42510095)
chr7 (8-65)||(44675433-44675490)
chr7 (6-65)||(13638453-13638512)
chr7 (6-65)||(29961947-29962006)
chr7 (25-65)||(3896571-3896611)
chr7 (25-65)||(13014957-13014997)
chr7 (25-65)||(15633335-15633375)
chr7 (25-65)||(32480321-32480361)
chr7 (27-65)||(48770220-48770258)
chr7 (7-72)||(41601521-41601586)
chr7 (21-65)||(19378711-19378755)
chr7 (19-72)||(27289707-27289764)
chr7 (5-57)||(29738876-29738928)
chr7 (25-65)||(30502612-30502652)
chr7 (5-57)||(41210196-41210248)
[»] chr6 (7 HSPs)
chr6 (5-65)||(35087841-35087901)
chr6 (25-73)||(30140924-30140972)
chr6 (6-55)||(6231489-6231538)
chr6 (5-57)||(34433635-34433687)
chr6 (7-66)||(9959315-9959374)
chr6 (29-65)||(1493236-1493272)
chr6 (25-65)||(34355738-34355778)
[»] chr1 (8 HSPs)
chr1 (3-62)||(26333616-26333675)
chr1 (6-65)||(38488865-38488924)
chr1 (5-57)||(27481360-27481412)
chr1 (6-62)||(28385198-28385254)
chr1 (25-73)||(21701459-21701507)
chr1 (5-57)||(44312816-44312868)
chr1 (25-65)||(41117295-41117335)
chr1 (25-65)||(49372424-49372464)
[»] chr5 (10 HSPs)
chr5 (6-71)||(22786026-22786091)
chr5 (29-75)||(16088661-16088707)
chr5 (25-65)||(2157771-2157811)
chr5 (5-57)||(13907599-13907651)
chr5 (25-73)||(29754940-29754988)
chr5 (27-73)||(23976637-23976683)
chr5 (7-71)||(38950997-38951059)
chr5 (29-65)||(18759825-18759861)
chr5 (25-65)||(22292485-22292525)
chr5 (25-65)||(23622609-23622649)
[»] chr4 (14 HSPs)
chr4 (26-66)||(18878281-18878321)
chr4 (25-71)||(4227895-4227941)
chr4 (5-63)||(20527775-20527833)
chr4 (25-71)||(27066334-27066380)
chr4 (25-71)||(27087435-27087481)
chr4 (25-65)||(4235419-4235459)
chr4 (25-73)||(12355330-12355378)
chr4 (25-65)||(13686114-13686154)
chr4 (26-62)||(16582335-16582371)
chr4 (25-65)||(30190941-30190981)
chr4 (25-65)||(30859469-30859509)
chr4 (26-62)||(33480499-33480535)
chr4 (25-65)||(54886602-54886642)
chr4 (25-65)||(55227718-55227758)
[»] scaffold0789 (1 HSPs)
scaffold0789 (26-73)||(4202-4249)
[»] chr2 (10 HSPs)
chr2 (6-65)||(30848292-30848351)
chr2 (25-65)||(23379974-23380014)
chr2 (25-70)||(2973408-2973453)
chr2 (6-62)||(20609365-20609424)
chr2 (1-62)||(26501272-26501333)
chr2 (21-65)||(10880112-10880156)
chr2 (25-65)||(16206645-16206685)
chr2 (5-57)||(29694468-29694520)
chr2 (5-57)||(32076947-32076999)
chr2 (5-57)||(40473160-40473212)
[»] scaffold0040 (1 HSPs)
scaffold0040 (25-65)||(62482-62522)


Alignment Details
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 13700189 - 13700130
Alignment:
Q  6 atttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||    
T  13700189 atttattatgctatcccacattgtattgaaactattattattaatgaaatgctataagca 13700130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 22897948 - 22898007
Alignment:
Q  6 atttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||||  ||||||| |||||||||||| |||||||||||||||||||||||||||    
T  22897948 atttattatgaaatccctctttgtattgaaactattattattaatgaaatgctataagca 22898007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 13811674 - 13811615
Alignment:
Q  6 atttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||||| ||||| || ||||||||| | |||||||| ||||||||||||||||||    
T  13811674 atttattatgtaatcccacaatgtattgaatctattattataaatgaaatgctataagca 13811615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 33213687 - 33213739
Alignment:
Q  5 catttattatgttatccctcattgtattgaaacaattattattaatgaaatgc 57  Q
    ||||||||||  |||||||  ||||||||||||||||||||| ||||||||||    
T  33213687 catttattatcatatcccttcttgtattgaaacaattattataaatgaaatgc 33213739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 37590071 - 37590031
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  37590071 attgtattgaaactcttattattaatgaaatgctataagca 37590031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 9530636 - 9530681
Alignment:
Q  26 ttgtattgaaacaattattattaatgaaatgctataagcacttttc 71  Q
    ||||||||||   ||||| |||||||||||||||||||||||||||    
T  9530636 ttgtattgaacatattatcattaatgaaatgctataagcacttttc 9530681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 17868020 - 17867963
Alignment:
Q  103 aggtaaatagtgcacataatc-attttaatgagtggaggaaatatctaattgttaata 159  Q
    ||||||||| |||||||| |  ||||||||||| |||||||||||||| |||||||||    
T  17868020 aggtaaataatgcacatattttattttaatgagaggaggaaatatctatttgttaata 17867963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 2246755 - 2246715
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||||| |  ||||||||||||||||||||||||||    
T  2246755 attgtattgaacctcttattattaatgaaatgctataagca 2246715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 14505827 - 14505867
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||  ||||||| ||||||||||||||||||    
T  14505827 attgtattgaaactcttattataaatgaaatgctataagca 14505867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 15990444 - 15990404
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||  ||||||| ||||||||||||||||||    
T  15990444 attgtattgaaactcttattataaatgaaatgctataagca 15990404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 28417644 - 28417696
Alignment:
Q  5 catttattatgttatccctcattgtattgaaacaattattattaatgaaatgc 57  Q
    ||||||||||  |||||||  || |||||||||||||||||| ||||||||||    
T  28417644 catttattatcatatcccttcttatattgaaacaattattataaatgaaatgc 28417696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 42626132 - 42626191
Alignment:
Q  6 atttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  42626132 atttattatgttatcccacattgtattgaaactattattattaataaaatgctataagca 42626191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 12526641 - 12526585
Alignment:
Q  6 atttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataa 62  Q
    |||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||    
T  12526641 atttattatgctatcccacattgtattgaaactattattattaatgaaatgctataa 12526585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 16878023 - 16877964
Alignment:
Q  6 atttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||||  ||||||| |||||||||||| |||||||||||||||||||||||||||    
T  16878023 atttattatgaaatccctctttgtattgaaactattattattaatgaaatgctataagca 16877964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 54561558 - 54561492
Alignment:
Q  5 catttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataagcacttttc 71  Q
    ||||||||| ||||||||   |||||||||| | |||||||||||| ||||||||||||||| ||||    
T  54561558 catttattaagttatccccagttgtattgaatctattattattaatcaaatgctataagcacatttc 54561492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 29372984 - 29372939
Alignment:
Q  27 tgtattgaaacaattattattaatgaaatgctataagcacttttcc 72  Q
    |||||||||||  ||||||| |||||||||||||||||||||||||    
T  29372984 tgtattgaaactcttattatcaatgaaatgctataagcacttttcc 29372939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 16739464 - 16739424
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  16739464 attgtattgaaactattattatcaatgaaatgctataagca 16739424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 18765646 - 18765582
Alignment:
Q  6 atttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataagcactttt 70  Q
    |||||||||||||| ||  ||||||||||| |   |||||| |||||||||||||||||||||||    
T  18765646 atttattatgttatacccaattgtattgaatcttctattataaatgaaatgctataagcactttt 18765582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 8555733 - 8555691
Alignment:
Q  21 cctcattgtattgaaacaattattattaatgaaatgctataag 63  Q
    |||||||||||||| |  |||||||||||||||||||||||||    
T  8555733 cctcattgtattgagaacattattattaatgaaatgctataag 8555691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 14485652 - 14485690
Alignment:
Q  27 tgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  14485652 tgtattgaacctattattattaatgaaatgctataagca 14485690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 6006069 - 6006029
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||  ||||||| ||||||||||||||||||    
T  6006069 attgtattgaaactcttattataaatgaaatgctataagca 6006029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 17790258 - 17790298
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||  ||||||| ||||||||||||||||||    
T  17790258 attgtattgaaactcttattataaatgaaatgctataagca 17790298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 19098700 - 19098740
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||  ||||||| ||||||||||||||||||    
T  19098700 attgtattgaaactcttattataaatgaaatgctataagca 19098740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 31228344 - 31228384
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||  ||||||| ||||||||||||||||||    
T  31228344 attgtattgaaactcttattataaatgaaatgctataagca 31228384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 35906966 - 35906926
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||||||| || ||||| ||||||||||||||||||    
T  35906966 attgtattgaaactatcattatcaatgaaatgctataagca 35906926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 53394944 - 53394980
Alignment:
Q  29 tattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||  ||||||||||||||||||||||||||    
T  53394944 tattgaaactcttattattaatgaaatgctataagca 53394980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 53437645 - 53437681
Alignment:
Q  29 tattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||  ||||||||||||||||||||||||||    
T  53437645 tattgaaactcttattattaatgaaatgctataagca 53437681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 42510095 - 42510030
Alignment:
Q  1 ccaacatttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataagcac 66  Q
    ||||| ||||||||||| |||| |||||||||||||| ||||| |||||||||||| |||||||||    
T  42510095 ccaacttttattatgttgtcccacattgtattgaaactattatcattaatgaaatgttataagcac 42510030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 44675433 - 44675490
Alignment:
Q  8 ttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||| |||||  ||||||||||||| |||||||||||||||||||||||||||    
T  44675433 ttattatgtaatcccaaattgtattgaaacgattattattaatgaaatgctataagca 44675490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 13638512 - 13638453
Alignment:
Q  6 atttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||||| ||||| || ||||||||| | |||| ||||||||||||||||||||||    
T  13638512 atttattatgtaatcccacaatgtattgaatctattactattaatgaaatgctataagca 13638453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 29961947 - 29962006
Alignment:
Q  6 atttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||||  ||||| || ||||||||| | |||||||||||||||||||||||||||    
T  29961947 atttattatgcaatcccacaatgtattgaatctattattattaatgaaatgctataagca 29962006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 3896571 - 3896611
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  3896571 attgtattgaaactcttattattaatgaaatgctataagca 3896611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 13014997 - 13014957
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  13014997 attgtattgaaactattattatcaatgaaatgctataagca 13014957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 15633335 - 15633375
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  15633335 attgtattgaaactattattatcaatgaaatgctataagca 15633375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 32480321 - 32480361
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  32480321 attgtattgaaactcttattattaatgaaatgctataagca 32480361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 48770220 - 48770258
Alignment:
Q  27 tgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  48770220 tgtattgaaactcttattattaatgaaatgctataagca 48770258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 41601521 - 41601586
Alignment:
Q  7 tttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataagcacttttcc 72  Q
    ||||||||| ||| ||  ||||||||||||| ||||| || | ||||||||||||||||| |||||    
T  41601521 tttattatgatatacccaattgtattgaaactattatgatgagtgaaatgctataagcacgtttcc 41601586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 19378755 - 19378711
Alignment:
Q  21 cctcattgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||||  | ||||||||||| ||||||||||||||    
T  19378755 cctcattgtattgaacaacttattattaataaaatgctataagca 19378711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 27289707 - 27289764
Alignment:
Q  19 tccctcattgtattgaaacaattattattaatgaaatgcta----taagcacttttcc 72  Q
    ||||| ||||||||| || ||||||||||||||||||||||    |||||||||||||    
T  27289707 tcccttattgtattggaataattattattaatgaaatgctagctataagcacttttcc 27289764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 29738876 - 29738928
Alignment:
Q  5 catttattatgttatccctcattgtattgaaacaattattattaatgaaatgc 57  Q
    ||||||||||  |||||||  |||||||| |||||||||||| ||||||||||    
T  29738876 catttattatcatatcccttcttgtattgcaacaattattataaatgaaatgc 29738928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 30502612 - 30502652
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||  ||||||||||||||||| ||||||||    
T  30502612 attgtattgaaactcttattattaatgaaatgttataagca 30502652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 41210196 - 41210248
Alignment:
Q  5 catttattatgttatccctcattgtattgaaacaattattattaatgaaatgc 57  Q
    ||||||||||   ||||||  ||||||||||||||||||||| ||||||||||    
T  41210196 catttattatcaaatcccttcttgtattgaaacaattattataaatgaaatgc 41210248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 35087901 - 35087841
Alignment:
Q  5 catttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||| |||||  ||||||||||||| |||||||||||||||||| ||||||||    
T  35087901 catttattatgtaatcccaaattgtattgaaacgattattattaatgaaatgttataagca 35087841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 30140972 - 30140924
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagcacttttccc 73  Q
    |||||||||||||  | ||||||||||||||||||||||||||||||||    
T  30140972 attgtattgaaactttgattattaatgaaatgctataagcacttttccc 30140924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 6231489 - 6231538
Alignment:
Q  6 atttattatgttatccctcattgtattgaaacaattattattaatgaaat 55  Q
    ||||||||||| ||||| |||| ||||||||| |||||||||||||||||    
T  6231489 atttattatgtcatcccacattatattgaaactattattattaatgaaat 6231538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 34433635 - 34433687
Alignment:
Q  5 catttattatgttatccctcattgtattgaaacaattattattaatgaaatgc 57  Q
    ||||||||||  |||||||  ||||||||||||||||||||| ||||||||||    
T  34433635 catttattatcatatcccttcttgtattgaaacaattattataaatgaaatgc 34433687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 9959315 - 9959374
Alignment:
Q  7 tttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataagcac 66  Q
    ||||||||| ||| ||  |||||||||| || ||||| ||||||||||||||||||||||    
T  9959315 tttattatgatatacccaattgtattgagactattatgattaatgaaatgctataagcac 9959374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 1493272 - 1493236
Alignment:
Q  29 tattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  1493272 tattgaaactattattatcaatgaaatgctataagca 1493236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 34355778 - 34355738
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||  ||||||| ||||||||||||||||||    
T  34355778 attgtattgaaactcttattatcaatgaaatgctataagca 34355738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 26333675 - 26333616
Alignment:
Q  3 aacatttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataa 62  Q
    ||||||||||| |||||||| |||||||||||||  ||||| ||||||||||||||||||    
T  26333675 aacatttattacgttatcccacattgtattgaaattattatcattaatgaaatgctataa 26333616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 38488924 - 38488865
Alignment:
Q  6 atttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||||  ||||||| |||||||||||  |||||||||||||||||||||||||||    
T  38488924 atttattatgaaatccctctttgtattgaaattattattattaatgaaatgctataagca 38488865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 27481412 - 27481360
Alignment:
Q  5 catttattatgttatccctcattgtattgaaacaattattattaatgaaatgc 57  Q
    ||||||||||  ||||||| |||||||||||||||||||||| ||||||||||    
T  27481412 catttattatcatatcccttattgtattgaaacaattattataaatgaaatgc 27481360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 28385198 - 28385254
Alignment:
Q  6 atttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataa 62  Q
    ||||||||||  ||||||| |||||||||||| |||||||||||||||||| |||||    
T  28385198 atttattatgaaatccctctttgtattgaaactattattattaatgaaatgttataa 28385254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 21701507 - 21701459
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagcacttttccc 73  Q
    |||||||||||||  |||| |||||||||||||||||||||| ||||||    
T  21701507 attgtattgaaactcttatgattaatgaaatgctataagcacgtttccc 21701459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 44312868 - 44312816
Alignment:
Q  5 catttattatgttatccctcattgtattgaaacaattattattaatgaaatgc 57  Q
    ||||||||||  |||||||  ||||||||||||||||||||| ||||||||||    
T  44312868 catttattatcatatcccttcttgtattgaaacaattattataaatgaaatgc 44312816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 41117295 - 41117335
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||| |||| |||||||| ||||||||||||||||||    
T  41117295 attgtattcaaactattattatcaatgaaatgctataagca 41117335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 49372424 - 49372464
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||  ||||||| ||||||||||||||||||    
T  49372424 attgtattgaaactcttattatcaatgaaatgctataagca 49372464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 22786091 - 22786026
Alignment:
Q  6 atttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataagcacttttc 71  Q
    |||||||||||||||||   |||||||||| | ||||||||||||||||||||||| |||| ||||    
T  22786091 atttattatgttatcccaagttgtattgaatccattattattaatgaaatgctataggcacctttc 22786026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 16088661 - 16088707
Alignment:
Q  29 tattgaaacaattattattaatgaaatgctataagcacttttcccaa 75  Q
    ||||||||| ||||| |||||||||||||||||||||| ||||||||    
T  16088661 tattgaaactattatgattaatgaaatgctataagcacgtttcccaa 16088707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 2157811 - 2157771
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  2157811 attgtattgaaactattattatcaatgaaatgctataagca 2157771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 13907651 - 13907599
Alignment:
Q  5 catttattatgttatccctcattgtattgaaacaattattattaatgaaatgc 57  Q
    ||||||||||  |||||||  ||||||||||||||||||||| ||||||||||    
T  13907651 catttattatcatatcccttcttgtattgaaacaattattataaatgaaatgc 13907599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 29754988 - 29754940
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagcacttttccc 73  Q
    |||||||||||||  | ||||||||||||||||||||||||| ||||||    
T  29754988 attgtattgaaactttgattattaatgaaatgctataagcacctttccc 29754940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 23976637 - 23976683
Alignment:
Q  27 tgtattgaaacaattattattaatgaaatgctataagcacttttccc 73  Q
    |||||||||||  | ||||||||||| ||||||||||||||||||||    
T  23976637 tgtattgaaactttgattattaatgatatgctataagcacttttccc 23976683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 38950997 - 38951059
Alignment:
Q  7 tttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataagcacttttc 71  Q
    ||||||||||||||||   |||||||||| | ||||||  |||||||||||||||||||| ||||    
T  38950997 tttattatgttatcccaagttgtattgaatccattatt--taatgaaatgctataagcacatttc 38951059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 18759825 - 18759861
Alignment:
Q  29 tattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||  ||||||||||||||||||||||||||    
T  18759825 tattgaaacttttattattaatgaaatgctataagca 18759861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 22292485 - 22292525
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||  ||||||| ||||||||||||||||||    
T  22292485 attgtattgaaactcttattataaatgaaatgctataagca 22292525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 23622609 - 23622649
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||||| |  ||||||||||||||||||||||||||    
T  23622609 attgtattgaatctcttattattaatgaaatgctataagca 23622649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 18878281 - 18878321
Alignment:
Q  26 ttgtattgaaacaattattattaatgaaatgctataagcac 66  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  18878281 ttgtattgaaactattattattaatgaaatgctataagcac 18878321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 4227941 - 4227895
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagcacttttc 71  Q
    ||||||||||||| ||||| |||||||||||||||||| ||| ||||    
T  4227941 attgtattgaaactattatgattaatgaaatgctataaacacgtttc 4227895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 20527833 - 20527775
Alignment:
Q  5 catttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataag 63  Q
    ||||||||||| ||| ||  |||||||||||||  ||||||| ||||||||||||||||    
T  20527833 catttattatgatatacccgattgtattgaaactcttattatcaatgaaatgctataag 20527775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 27066380 - 27066334
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagcacttttc 71  Q
    |||||||||||||  | ||||||||||||||||||||||||| ||||    
T  27066380 attgtattgaaactttgattattaatgaaatgctataagcacatttc 27066334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 27087481 - 27087435
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagcacttttc 71  Q
    |||||||||||||  | ||||||||||||||||||||||||| ||||    
T  27087481 attgtattgaaactttgattattaatgaaatgctataagcacatttc 27087435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 4235419 - 4235459
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||| || ||||| |||||||||||||||||||||    
T  4235419 attgtattgagactattatgattaatgaaatgctataagca 4235459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 12355330 - 12355378
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagcacttttccc 73  Q
    |||||||||||||  | ||||||||||||||||| ||||||| ||||||    
T  12355330 attgtattgaaactttgattattaatgaaatgctttaagcacctttccc 12355378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 13686114 - 13686154
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||||| |  ||||||||||||||||||||||||||    
T  13686114 attgtattgaatctcttattattaatgaaatgctataagca 13686154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 16582371 - 16582335
Alignment:
Q  26 ttgtattgaaacaattattattaatgaaatgctataa 62  Q
    |||||||||||| |||||||||||||| |||||||||    
T  16582371 ttgtattgaaactattattattaatgatatgctataa 16582335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 30190981 - 30190941
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||  ||||||||||||||||| ||||||||    
T  30190981 attgtattgaaactcttattattaatgaaatgttataagca 30190941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 30859469 - 30859509
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||  ||||||| ||||||||||||||||||    
T  30859469 attgtattgaaactcttattataaatgaaatgctataagca 30859509  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 33480499 - 33480535
Alignment:
Q  26 ttgtattgaaacaattattattaatgaaatgctataa 62  Q
    |||||||||| | ||||||||||||||||||||||||    
T  33480499 ttgtattgaatctattattattaatgaaatgctataa 33480535  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 54886602 - 54886642
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||||| | ||||| |||||||||||||||||||||    
T  54886602 attgtattgaatctattatcattaatgaaatgctataagca 54886642  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 55227718 - 55227758
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||  ||||||| ||||||||||||||||||    
T  55227718 attgtattgaaactcttattataaatgaaatgctataagca 55227758  T

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Target: scaffold0789 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 4249 - 4202
Alignment:
Q  26 ttgtattgaaacaattattattaatgaaatgctataagcacttttccc 73  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||||||    
T  4249 ttgtattgaaactattattatcaatgaaatgctataagcacgtttccc 4202  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 30848292 - 30848351
Alignment:
Q  6 atttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||||  ||||| || ||||||||| | |||||||||||||||||||||||||||    
T  30848292 atttattatgcaatcccacaatgtattgaatctattattattaatgaaatgctataagca 30848351  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 23379974 - 23380014
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  23379974 attgtattgaaactattattattaatgaaatgttataagca 23380014  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 2973453 - 2973408
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagcactttt 70  Q
    |||||||||||||  | |||| ||||||||||||||||||||||||    
T  2973453 attgtattgaaactttgattactaatgaaatgctataagcactttt 2973408  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 20609365 - 20609424
Alignment:
Q  6 atttattatgttatccctcattgtattgaa---acaattattattaatgaaatgctataa 62  Q
    |||||||||| |||||| ||||||||||||   || |||||||||||||||||| |||||    
T  20609365 atttattatggtatcccacattgtattgaatagactattattattaatgaaatgttataa 20609424  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 26501333 - 26501272
Alignment:
Q  1 ccaacatttattatgttatccctcattgtattgaaacaattattattaatgaaatgctataa 62  Q
    |||| ||||||||||| ||| | || ||||||||| | |||||||| |||||||||||||||    
T  26501333 ccaatatttattatgtaatcgcacaatgtattgaacctattattataaatgaaatgctataa 26501272  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 10880112 - 10880156
Alignment:
Q  21 cctcattgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||| ||||||||||  | ||||||||||||||||||||||||||    
T  10880112 cctcgttgtattgaacaagttattattaatgaaatgctataagca 10880156  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 16206645 - 16206685
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||  ||||||| ||||||||||||||||||    
T  16206645 attgtattgaaactcttattataaatgaaatgctataagca 16206685  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 29694520 - 29694468
Alignment:
Q  5 catttattatgttatccctcattgtattgaaacaattattattaatgaaatgc 57  Q
    ||||||||||  |||||||  ||| ||||||||||||||||| ||||||||||    
T  29694520 catttattatcatatcccttcttgcattgaaacaattattataaatgaaatgc 29694468  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 32076999 - 32076947
Alignment:
Q  5 catttattatgttatccctcattgtattgaaacaattattattaatgaaatgc 57  Q
    ||||||||||  |||||||  ||||||||||||||||||| | ||||||||||    
T  32076999 catttattatcatatcccttcttgtattgaaacaattattgtaaatgaaatgc 32076947  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 40473160 - 40473212
Alignment:
Q  5 catttattatgttatccctcattgtattgaaacaattattattaatgaaatgc 57  Q
    ||||||||||  |||| ||  ||||||||||||||||||||| ||||||||||    
T  40473160 catttattatcatatcacttcttgtattgaaacaattattataaatgaaatgc 40473212  T

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Target: scaffold0040 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 62522 - 62482
Alignment:
Q  25 attgtattgaaacaattattattaatgaaatgctataagca 65  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  62522 attgtattgaaactcttattattaatgaaatgctataagca 62482  T

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