View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18989_high_11 (Length: 339)

Name: NF18989_high_11
Description: NF18989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18989_high_11
NF18989_high_11
[»] chr1 (33 HSPs)
chr1 (1-336)||(29622120-29622455)
chr1 (43-339)||(22524165-22524461)
chr1 (3-324)||(30890115-30890436)
chr1 (1-339)||(52802169-52802508)
chr1 (1-265)||(47502428-47502692)
chr1 (1-247)||(35258569-35258814)
chr1 (1-247)||(23275800-23276050)
chr1 (134-324)||(19924809-19925001)
chr1 (5-241)||(51320851-51321087)
chr1 (10-242)||(11183314-11183549)
chr1 (1-242)||(45825023-45825253)
chr1 (2-339)||(31783425-31783749)
chr1 (1-171)||(19527239-19527409)
chr1 (147-339)||(2425528-2425719)
chr1 (14-110)||(11196148-11196244)
chr1 (43-155)||(2425113-2425224)
chr1 (293-339)||(3728774-3728820)
chr1 (293-339)||(8548657-8548703)
chr1 (293-339)||(26879283-26879329)
chr1 (1-62)||(49857639-49857700)
chr1 (299-339)||(3944013-3944053)
chr1 (299-339)||(3993837-3993877)
chr1 (3-110)||(19925010-19925117)
chr1 (276-314)||(8473850-8473888)
chr1 (302-339)||(13636119-13636156)
chr1 (291-336)||(19928797-19928842)
chr1 (299-339)||(6562155-6562195)
chr1 (303-339)||(11183225-11183261)
chr1 (295-339)||(15051338-15051382)
chr1 (299-339)||(20353929-20353969)
chr1 (299-339)||(38771668-38771708)
chr1 (295-339)||(44470001-44470045)
chr1 (300-336)||(48751405-48751441)
[»] chr4 (47 HSPs)
chr4 (1-339)||(40357976-40358314)
chr4 (1-339)||(21022584-21022922)
chr4 (1-314)||(50274798-50275111)
chr4 (3-339)||(30726439-30726775)
chr4 (3-336)||(1089282-1089615)
chr4 (3-324)||(1308812-1309133)
chr4 (1-246)||(55407483-55407732)
chr4 (1-246)||(67724-67968)
chr4 (1-247)||(51683332-51683579)
chr4 (3-242)||(48256269-48256509)
chr4 (1-222)||(50901637-50901857)
chr4 (122-339)||(8109430-8109649)
chr4 (1-221)||(21538158-21538377)
chr4 (1-109)||(37021779-37021887)
chr4 (4-213)||(11083715-11083923)
chr4 (4-181)||(10753136-10753312)
chr4 (4-181)||(10966905-10967081)
chr4 (176-339)||(37021933-37022095)
chr4 (276-337)||(41800908-41800969)
chr4 (1-213)||(14315540-14315751)
chr4 (273-339)||(37563248-37563314)
chr4 (4-86)||(46436536-46436618)
chr4 (273-339)||(54633983-54634049)
chr4 (1-62)||(14297441-14297502)
chr4 (282-339)||(39773443-39773500)
chr4 (293-339)||(31425306-31425352)
chr4 (293-339)||(49169085-49169131)
chr4 (122-211)||(41933439-41933527)
chr4 (295-339)||(15995761-15995805)
chr4 (299-339)||(15999793-15999833)
chr4 (295-339)||(19069226-19069270)
chr4 (299-339)||(26932623-26932663)
chr4 (295-339)||(51492110-51492154)
chr4 (185-246)||(40354705-40354768)
chr4 (122-213)||(46436410-46436501)
chr4 (293-339)||(37563104-37563150)
chr4 (297-339)||(37563183-37563225)
chr4 (297-339)||(39773525-39773567)
chr4 (297-339)||(54633918-54633960)
chr4 (302-339)||(958591-958628)
chr4 (302-339)||(6178107-6178144)
chr4 (302-339)||(9890033-9890070)
chr4 (120-153)||(37021903-37021936)
chr4 (290-339)||(41795438-41795487)
chr4 (302-339)||(49094123-49094160)
chr4 (276-324)||(6181762-6181810)
chr4 (291-339)||(40354644-40354692)
[»] chr3 (56 HSPs)
chr3 (1-339)||(3501588-3501929)
chr3 (1-322)||(50963014-50963331)
chr3 (1-336)||(42165205-42165539)
chr3 (1-339)||(4008019-4008357)
chr3 (1-314)||(50216574-50216889)
chr3 (1-314)||(596822-597135)
chr3 (3-314)||(3975770-3976081)
chr3 (1-246)||(20917713-20917957)
chr3 (1-246)||(20926675-20926919)
chr3 (1-242)||(42756289-42756530)
chr3 (1-246)||(49196143-49196388)
chr3 (5-267)||(47073907-47074171)
chr3 (1-265)||(51807082-51807346)
chr3 (1-242)||(30255698-30255939)
chr3 (1-247)||(48888867-48889120)
chr3 (1-212)||(44229881-44230090)
chr3 (26-250)||(48563070-48563295)
chr3 (172-246)||(42807498-42807572)
chr3 (276-339)||(49144427-49144490)
chr3 (1-112)||(42805958-42806061)
chr3 (276-337)||(2967896-2967957)
chr3 (185-247)||(2647828-2647890)
chr3 (273-339)||(41844332-41844398)
chr3 (293-339)||(46697750-46697796)
chr3 (14-60)||(31045302-31045348)
chr3 (293-339)||(35743570-35743616)
chr3 (293-339)||(50477219-50477265)
chr3 (295-339)||(600534-600578)
chr3 (295-339)||(2271395-2271439)
chr3 (295-339)||(4004885-4004929)
chr3 (299-339)||(30943228-30943268)
chr3 (271-314)||(35743457-35743500)
chr3 (297-339)||(1835252-1835294)
chr3 (301-339)||(34049119-34049157)
chr3 (297-339)||(41844267-41844309)
chr3 (301-339)||(54389834-54389872)
chr3 (302-339)||(2647696-2647733)
chr3 (302-339)||(41803037-41803074)
chr3 (302-339)||(43476231-43476268)
chr3 (290-339)||(46402324-46402373)
chr3 (294-339)||(49268834-49268879)
chr3 (302-339)||(55385176-55385213)
chr3 (291-339)||(2647768-2647816)
chr3 (295-339)||(2743437-2743481)
chr3 (299-339)||(3953209-3953249)
chr3 (295-339)||(4002495-4002539)
chr3 (299-339)||(6745320-6745360)
chr3 (299-339)||(8156547-8156587)
chr3 (303-339)||(20918009-20918045)
chr3 (303-339)||(20926971-20927007)
chr3 (299-339)||(42166404-42166444)
chr3 (303-339)||(44227151-44227187)
chr3 (214-246)||(44227246-44227278)
chr3 (276-324)||(46389012-46389060)
chr3 (276-324)||(46701996-46702044)
chr3 (295-339)||(52387837-52387881)
[»] chr5 (32 HSPs)
chr5 (5-339)||(28876682-28877016)
chr5 (1-314)||(8580201-8580514)
chr5 (1-319)||(14385-14703)
chr5 (1-339)||(7757364-7757701)
chr5 (3-324)||(28241497-28241818)
chr5 (1-247)||(512468-512714)
chr5 (1-247)||(19228368-19228614)
chr5 (1-242)||(38968231-38968474)
chr5 (1-246)||(42537276-42537526)
chr5 (4-221)||(42942185-42942403)
chr5 (1-213)||(8701920-8702131)
chr5 (4-102)||(40624623-40624720)
chr5 (2-107)||(20422210-20422315)
chr5 (276-337)||(19041088-19041149)
chr5 (1-213)||(17658488-17658699)
chr5 (293-339)||(28238178-28238224)
chr5 (185-247)||(28880203-28880265)
chr5 (185-247)||(30708785-30708847)
chr5 (300-339)||(27659979-27660018)
chr5 (300-339)||(31787559-31787598)
chr5 (297-339)||(8577013-8577055)
chr5 (301-339)||(13837763-13837801)
chr5 (163-213)||(40624781-40624831)
chr5 (302-339)||(11346046-11346083)
chr5 (302-339)||(18307293-18307330)
chr5 (302-339)||(19037467-19037504)
chr5 (290-339)||(19037552-19037601)
chr5 (299-339)||(14280894-14280934)
chr5 (295-339)||(28388509-28388553)
chr5 (295-339)||(34122563-34122607)
chr5 (295-339)||(37814621-37814665)
chr5 (299-339)||(38855705-38855745)
[»] chr2 (29 HSPs)
chr2 (1-339)||(28468680-28469018)
chr2 (1-314)||(21998252-21998567)
chr2 (1-339)||(17420607-17420944)
chr2 (6-314)||(45428654-45428963)
chr2 (1-279)||(7185127-7185406)
chr2 (1-339)||(39947638-39947977)
chr2 (1-339)||(25964850-25965197)
chr2 (2-265)||(45137129-45137392)
chr2 (126-324)||(42505582-42505781)
chr2 (1-215)||(32956050-32956265)
chr2 (293-339)||(43536141-43536187)
chr2 (299-339)||(18000271-18000311)
chr2 (293-339)||(30493398-30493444)
chr2 (299-339)||(5351726-5351766)
chr2 (276-324)||(5352018-5352066)
chr2 (295-339)||(7189941-7189985)
chr2 (300-339)||(22003396-22003435)
chr2 (300-339)||(23347323-23347362)
chr2 (300-339)||(25184825-25184864)
chr2 (301-339)||(43982238-43982276)
chr2 (293-339)||(44100786-44100832)
chr2 (291-336)||(15835163-15835208)
chr2 (302-339)||(17424171-17424208)
chr2 (276-324)||(3940700-3940748)
chr2 (299-339)||(3943186-3943226)
chr2 (295-339)||(7267434-7267478)
chr2 (276-324)||(15831181-15831229)
chr2 (276-324)||(20937952-20938000)
chr2 (14-58)||(35464313-35464357)
[»] scaffold0634 (1 HSPs)
scaffold0634 (1-334)||(7462-7795)
[»] chr8 (44 HSPs)
chr8 (1-279)||(45064340-45064618)
chr8 (1-314)||(15036424-15036737)
chr8 (1-338)||(41249769-41250105)
chr8 (1-339)||(39938912-39939249)
chr8 (3-324)||(42485236-42485557)
chr8 (1-314)||(43211570-43211882)
chr8 (3-325)||(489327-489649)
chr8 (1-247)||(39846682-39846931)
chr8 (1-339)||(40076946-40077284)
chr8 (1-246)||(43188181-43188426)
chr8 (1-246)||(34822713-34822961)
chr8 (1-246)||(25864636-25864880)
chr8 (120-339)||(39601743-39601961)
chr8 (1-238)||(39252149-39252388)
chr8 (120-333)||(35026532-35026745)
chr8 (145-247)||(5304010-5304112)
chr8 (1-108)||(39601985-39602092)
chr8 (1-95)||(5303917-5304011)
chr8 (10-102)||(24249759-24249851)
chr8 (43-110)||(2984390-2984457)
chr8 (17-102)||(37327080-37327164)
chr8 (273-339)||(184520-184586)
chr8 (293-339)||(26663021-26663067)
chr8 (282-339)||(36677906-36677963)
chr8 (299-339)||(8419443-8419483)
chr8 (299-339)||(32375690-32375730)
chr8 (37-81)||(35026740-35026784)
chr8 (13-60)||(22495225-22495272)
chr8 (300-339)||(22550860-22550899)
chr8 (300-339)||(41016453-41016492)
chr8 (122-181)||(45127946-45128005)
chr8 (293-339)||(184376-184422)
chr8 (297-339)||(184455-184497)
chr8 (293-339)||(22014285-22014331)
chr8 (297-339)||(22014364-22014406)
chr8 (293-339)||(23018724-23018770)
chr8 (302-339)||(26451519-26451556)
chr8 (291-336)||(42481603-42481648)
chr8 (302-339)||(42602499-42602536)
chr8 (299-339)||(7344551-7344591)
chr8 (299-339)||(17924277-17924317)
chr8 (295-339)||(34366950-34366994)
chr8 (295-339)||(35962346-35962390)
chr8 (299-339)||(43262460-43262500)
[»] chr7 (33 HSPs)
chr7 (1-336)||(34738406-34738743)
chr7 (3-339)||(15073926-15074262)
chr7 (1-267)||(17835188-17835453)
chr7 (1-265)||(27453315-27453579)
chr7 (1-339)||(47776371-47776711)
chr7 (1-229)||(10517130-10517357)
chr7 (5-246)||(39460660-39460901)
chr7 (3-339)||(42507725-42508061)
chr7 (1-241)||(36977733-36977975)
chr7 (1-247)||(37340435-37340681)
chr7 (1-224)||(47672781-47673004)
chr7 (1-339)||(9494491-9494840)
chr7 (273-339)||(10098085-10098151)
chr7 (293-339)||(35606828-35606874)
chr7 (10-102)||(17741163-17741255)
chr7 (1-213)||(14689754-14689965)
chr7 (122-221)||(17741274-17741373)
chr7 (185-247)||(15070606-15070668)
chr7 (293-339)||(41884114-41884160)
chr7 (299-339)||(45767855-45767895)
chr7 (300-339)||(15070394-15070433)
chr7 (296-339)||(17834526-17834569)
chr7 (300-339)||(17840885-17840924)
chr7 (300-339)||(18105412-18105451)
chr7 (301-339)||(7975605-7975643)
chr7 (301-339)||(9367720-9367758)
chr7 (302-339)||(30355236-30355273)
chr7 (302-339)||(42499448-42499485)
chr7 (291-336)||(48407273-48407318)
chr7 (298-338)||(9491457-9491497)
chr7 (276-324)||(17465684-17465732)
chr7 (276-324)||(17587482-17587530)
chr7 (299-339)||(30791002-30791042)
[»] scaffold0293 (1 HSPs)
scaffold0293 (3-339)||(426-756)
[»] scaffold0180 (1 HSPs)
scaffold0180 (1-339)||(15319-15656)
[»] scaffold0101 (3 HSPs)
scaffold0101 (16-339)||(40746-41056)
scaffold0101 (185-247)||(36676-36738)
scaffold0101 (302-339)||(36531-36568)
[»] scaffold0184 (1 HSPs)
scaffold0184 (121-338)||(18111-18326)
[»] scaffold0078 (1 HSPs)
scaffold0078 (121-338)||(54518-54733)
[»] scaffold0155 (1 HSPs)
scaffold0155 (1-221)||(8361-8580)
[»] chr6 (22 HSPs)
chr6 (1-243)||(24088478-24088722)
chr6 (1-217)||(31768861-31769082)
chr6 (1-110)||(6320259-6320368)
chr6 (148-247)||(6320371-6320470)
chr6 (276-339)||(27616754-27616817)
chr6 (282-339)||(26712087-26712144)
chr6 (289-336)||(31768795-31768842)
chr6 (14-60)||(30424143-30424189)
chr6 (295-339)||(11840240-11840284)
chr6 (295-339)||(13382668-13382712)
chr6 (295-339)||(18351633-18351677)
chr6 (300-339)||(28249924-28249963)
chr6 (163-221)||(21600751-21600809)
chr6 (302-339)||(6204866-6204903)
chr6 (302-339)||(11691833-11691870)
chr6 (302-339)||(22305147-22305184)
chr6 (291-339)||(27639526-27639574)
chr6 (299-339)||(29076317-29076357)
chr6 (299-339)||(29109850-29109890)
chr6 (299-339)||(29111290-29111330)
chr6 (122-173)||(30424247-30424299)
chr6 (276-324)||(30829622-30829670)
[»] scaffold0744 (1 HSPs)
scaffold0744 (299-339)||(417-457)
[»] scaffold0494 (4 HSPs)
scaffold0494 (299-339)||(896-936)
scaffold0494 (300-339)||(870-909)
scaffold0494 (300-339)||(5370-5409)
scaffold0494 (276-324)||(11424-11472)
[»] scaffold0038 (1 HSPs)
scaffold0038 (300-339)||(50086-50125)
[»] scaffold0012 (1 HSPs)
scaffold0012 (300-339)||(232827-232866)
[»] scaffold0007 (1 HSPs)
scaffold0007 (13-60)||(251183-251230)
[»] scaffold0341 (1 HSPs)
scaffold0341 (299-339)||(17345-17385)
[»] scaffold0116 (1 HSPs)
scaffold0116 (295-339)||(15945-15989)
[»] scaffold0011 (1 HSPs)
scaffold0011 (295-339)||(236224-236268)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 29622120 - 29622455
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||    
T  29622120 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattctcaattttgaaatcaaccctaaccacatacaaactac 29622219  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29622220 tctaatttttttaaaaaaatcaacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaat 29622319  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagat 300  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  29622320 tcgtgaaaatggatttggtgaagattggagagaaattgagaattttgaaggttttttggaaatgggaggttctggttctgcgttctggttatgttcagat 29622419  T
Q  301 ttcctcgccagttagctaccgaggttttcctcggca 336  Q
    ||||||| |||||| |||||||||||||||||||||    
T  29622420 ttcctcggcagttaactaccgaggttttcctcggca 29622455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 43 - 339
Target Start/End: Complemental strand, 22524461 - 22524165
Alignment:
Q  43 acacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactctaatttttctnnnnnnntcaacctaaacaaattaacatta 142  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||||||||| || |||||||||||| |       |||||||||||||||||||||||    
T  22524461 acacatgcaatcatcaaattatcaattttaaaatcaaccctaaccacatgcaaaccactctaattttt-ttaaaaaatcaacctaaacaaattaacatta 22524363  T
Q  143 tgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgtgaaaatggatttggtgaagattggaaagaaattgagaa 242  Q
    | |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||    
T  22524362 tcattaaaatgattgacacaacttacttgtgataatttgcagttgatttgcttgcaattcgtgaaaatcgatttggtgaagattggagagaatttgagaa 22524263  T
Q  243 ttttgaaggttttttggaaatgg-gagattctggttctacgttctggttatgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||| || | |||| ||||||| ||  ||||| |||| |||||||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||    
T  22524262 ttttggagttgtttttgaaatggagaagttctgtttctgcgttctggttatgttcagattttctcggcagttaactaccgaggttttcctcgggagtt 22524165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 3 - 324
Target Start/End: Complemental strand, 30890436 - 30890115
Alignment:
Q  3 acataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactc 102  Q
    |||||||||||| ||||||||| ||||||||   ||||||||||||||||| || |||||  |||||     || || |||||||||||||| |||||||    
T  30890436 acataggcaacatctacattcatttatcaatacataaactacacatgcaatgatgaaattgtcaattcatttataaaacctaaccacatgcaaactactc 30890337  T
Q  103 taatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattc 202  Q
     ||||||| |       | ||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30890336 -aatttttttaaaaaacttaacataaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattc 30890238  T
Q  203 gtgaaaatggatttggtgaagattggaaagaaattgagaattttgaa-ggttttttggaaatgggagattctggttctacgttctggttatgttcagatt 301  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| | ||||||| ||||||||| |||||||||| |||||||||||||| ||||||    
T  30890237 gtgaaaatggatttggtgaagattggagagaatttgagaattttgaatgtttttttgtaaatgggaggttctggttctgcgttctggttatgtccagatt 30890138  T
Q  302 tcctcgccagttagctaccgagg 324  Q
    |||||| |||||| |||||||||    
T  30890137 tcctcggcagttaactaccgagg 30890115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 52802508 - 52802169
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    ||||||| |||||||||||||||| |||||||||  ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  52802508 caacataagcaacaactacattcatttatcaattcttaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 52802409  T
Q  101 tctaatttttctnnnnnnn-tcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaa 199  Q
    |||||||||| |        |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52802408 tctaatttttttaaaaaaaatcaacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatgtgcagttgatttgcttgcaa 52802309  T
Q  200 ttcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatggga---gattctggttctacgttctggttatgttc 296  Q
    |||||||||||   |||||||| ||||||  ||||||||||||||||  ||   ||||| |||||| |   | ||||| |||| |||| || |||||||     
T  52802308 ttcgtgaaaataactttggtgacgattgg--agaaattgagaattttagagaagttttgaaaatggtatatgtttctgtttctgcgtt-tgtttatgtta 52802212  T
Q  297 agatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||   | ||| |||||| ||||||||||||||||||||||||    
T  52802211 agaaaacttcggcagttaactaccgaggttttcctcggcagtt 52802169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 47502692 - 47502428
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||  ||||||| |||||||| ||||||||||||| |||||    
T  47502692 caacataggcaacaactacattcatttatcaattcctaaattacacatgcaatcatcaaattgtcaattttaaaatcaactctaaccacatgcaaactac 47502593  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       | |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| |||||||    
T  47502592 tctaattttttttaaaaaataaacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgtttgcaat 47502493  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgg 265  Q
    |||| ||||||  |||||||||||||||| |||||||| |||||||| ||   ||||||||||||    
T  47502492 tcgtaaaaatgattttggtgaagattggagagaaattgtgaattttggagaagttttggaaatgg 47502428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 35258569 - 35258814
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||| ||||| |||||||||  ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  35258569 caacataggcaacaactaaattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 35258668  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       | |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||    
T  35258669 tctaattttt-tttaaaaataaacctaaacaaactaacattattattaaaatgattgatacaacttacttgtgataatgtgcagttgatatgcttgcaat 35258767  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttg 247  Q
    || ||||||| | ||||||||||||||||||||| ||||||| ||||    
T  35258768 tcatgaaaatagctttggtgaagattggaaagaatttgagaagtttg 35258814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 23275800 - 23276050
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||  ||||||  |||||||||||||||||||||| |||||    
T  23275800 caacataggcaacaactacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaatttaaaaatcaaccctaaccacatgcaaactac 23275899  T
Q  101 tctaatttttctnnnnnnn----tcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttg 196  Q
    |||||||||| |           | |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| ||||| ||||||||||||    
T  23275900 tctaattttttttttttttaaaataaacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataacgtgcagttgatttgcttg 23275999  T
Q  197 caattcgtgaaaatggatttggtgaagattggaaagaaattgagaattttg 247  Q
    |||||||||||||||  ||||||||||||||||||||| ||||||| ||||    
T  23276000 caattcgtgaaaatgactttggtgaagattggaaagaatttgagaagtttg 23276050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 134 - 324
Target Start/End: Complemental strand, 19925001 - 19924809
Alignment:
Q  134 ttaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgtgaaaatggatttggtgaagattggaaaga 233  Q
    |||||||||  ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  19925001 ttaacattaacattaaaatgattgacacaacttacttgtgataatgcgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagattggagaga 19924902  T
Q  234 aattgagaattttgaagg--ttttttggaaatgggagattctggttctacgttctggttatgttcagatttcctcgccagttagctaccgagg 324  Q
    |||||||||||||||| |  ||||||| ||||||||| |||||||||| |||||||||||||| |||||||||||| |||||| || ||||||    
T  19924901 aattgagaattttgaatgttttttttgtaaatgggaggttctggttctgcgttctggttatgtccagatttcctcggcagttaactgccgagg 19924809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 51321087 - 51320851
Alignment:
Q  5 ataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactcta 104  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||||||    
T  51321087 ataggcaacaactacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactcta 51320988  T
Q  105 atttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgat--tgacacaacttacttgtgataatgtgcatttgatttgcttgcaattc 202  Q
     ||||| |       | |||||||||||| ||||||||| |||||||||||  | |  ||||||||||||||||||||||| ||||||||||| ||||||    
T  51320987 tttttttt--taaaataaacctaaacaaactaacattatcattaaaatgattattattcaacttacttgtgataatgtgcagttgatttgcttccaattc 51320890  T
Q  203 gtgaaaatggatttggtgaagattggaaagaaattgaga 241  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  51320889 gtgaaaatggttttggtgaagattggaaagaatttgaga 51320851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 11183549 - 11183314
Alignment:
Q  10 caacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactctaatttt 109  Q
    ||||||||||||| | |||||||||  ||||||||||||| ||||||||||||  ||||||| |||||||| ||||||||||||| ||||||||||||||    
T  11183549 caacaactacattaatttatcaattcataaactacacatgtaatcatcaaattgtcaattttaaaatcaactctaaccacatgcaaactactctaatttt 11183450  T
Q  110 tctnnnnnnn---tcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgtga 206  Q
    |||          | |||||||||||| |||||| || |||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  11183449 tcttttttttaaataaacctaaacaaactaacataatcattaaaataattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtga 11183350  T
Q  207 aaatggatttggtgaagattggaaagaaattgagaa 242  Q
    |||| | ||||||||||||||||||||| |||||||    
T  11183349 aaattgctttggtgaagattggaaagaatttgagaa 11183314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 45825253 - 45825023
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  45825253 caacataggcaacaactacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 45825154  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    ||||||||||         | ||   ||| ||| ||||||||| |||||||||||||| ||||||||||||||||||| |||  |||||||||| |||||    
T  45825153 tctaattttt--------tttaa---aaataaactaacattatcattaaaatgattgatacaacttacttgtgataatatgcgattgatttgctggcaat 45825065  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaa 242  Q
    |||||||||||  |||||||||||||||| ||||||||||||    
T  45825064 tcgtgaaaatgattttggtgaagattggagagaaattgagaa 45825023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 2 - 339
Target Start/End: Original strand, 31783425 - 31783749
Alignment:
Q  2 aacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactact 101  Q
    ||||||||||||||||||||| | ||||||||| ||||||||||||| |||||||||||||  ||||||| ||||||||||||||||||| || ||||||    
T  31783425 aacataggcaacaactacatttatttatcaattcctaaactacacatacaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactact 31783524  T
Q  102 ctaatttttct----nnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgc 197  Q
    ||||||||| |           | |||||||||||||||||||||  |||||||||||||||                |||||||| |||||||||||||    
T  31783525 ctaattttttttttataaaaaataaacctaaacaaattaacattaacattaaaatgattgac----------------aatgtgcacttgatttgcttgc 31783608  T
Q  198 aattcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttca 297  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||  | |||||||||| |||  |||||||||||||   || ||| ||  |    
T  31783609 aattcgtgaaaatggatttggtgaagattgaagagaaattgagaattttgaaattgttttggaaataggaagttctggttctacg-aatgattaagtcaa 31783707  T
Q  298 gatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||||| |||||| || |||||||||||||||||||||    
T  31783708 gatttcctcggcagttaactcccgaggttttcctcggcagtt 31783749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 19527239 - 19527409
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  |||| |||||||||||||||||||||  ||||||| ||||||||| |||||||||||| |||||    
T  19527239 caacataggcaacaactacattcatttatcaattcataaaatacacatgcaatcatcaaattgtcaattttaaaatcaaccataaccacatgcaaactac 19527338  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttg 171  Q
    |||||||||| |       ||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  19527339 tctaattttttttttaaaatcaacttaaacaaattaacattatcattaaaatgattgacacaacttacttg 19527409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 147 - 339
Target Start/End: Original strand, 2425528 - 2425719
Alignment:
Q  147 taaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgtgaaaatggatttggtgaagattggaaagaaattgagaatttt 246  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||   |||||||||||||||||| | || ||| |||||||    
T  2425528 taaaatgattgacacaacttacttgtgataatgcgcagttgatttgcttgcaattcgtgaaagaagatttggtgaagattggagaaaatttgtgaatttt 2425627  T
Q  247 gaaggttttttggaaatgggagattctggttctacgttctggttatgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |     |||| | |||||||  | || |||| | ||||||||||  || |||||||||||| |||||| |||||||| || ||||| ||||||    
T  2425628 gtgaagttttggaaaatggggaagtccggtt-tgcgttctggtttagtgcagatttcctcggcagttaactaccgagattctcctcagcagtt 2425719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 11196244 - 11196148
Alignment:
Q  14 aactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactctaattttt 110  Q
    ||||||||| | |||||||||  |||||||||||||||||||||||| |  ||||||| |||||||||||||||||||||| |||||||||||||||    
T  11196244 aactacattaatttatcaattcataaactacacatgcaatcatcaaaatgtcaattttaaaatcaaccctaaccacatgcaaactactctaattttt 11196148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 2425113 - 2425224
Alignment:
Q  43 acacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactctaatttttctnnnnnnntcaacctaaacaaattaacatta 142  Q
    ||||||||||||||||||||  ||||||| |||||||| |||||||||| || ||||||||||||||| |       |||||||||||||||||||||||    
T  2425113 acacatgcaatcatcaaattatcaattttaaaatcaactctaaccacatacaaactactctaattttt-ttaaaaaatcaacctaaacaaattaacatta 2425211  T
Q  143 tgattaaaatgat 155  Q
    |||||||||||||    
T  2425212 tgattaaaatgat 2425224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 3728820 - 3728774
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||    
T  3728820 gttcagatttcctcggcagttaactaccgaggttttcctcggcagtt 3728774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 8548657 - 8548703
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||    
T  8548657 gttcagatttcctcggcagttaactaccgaggttttcctcggcagtt 8548703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 26879283 - 26879329
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||| | |||||| ||||||||||||||||||||||||    
T  26879283 gttcagatttccttggcagttaactaccgaggttttcctcggcagtt 26879329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 49857639 - 49857700
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaatt 62  Q
    |||||||||||||||||||||||| |||||||    ||||||||||||||||| || |||||    
T  49857639 caacataggcaacaactacattcatttatcaaaacataaactacacatgcaatgataaaatt 49857700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 3944053 - 3944013
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  3944053 atttcctcggcagttaactaccgaggttttcctcggcagtt 3944013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 3993837 - 3993877
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  3993837 atttcctcggcagttaactaccgaggttttcctcggcagtt 3993877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 19925117 - 19925010
Alignment:
Q  3 acataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactc 102  Q
    |||||||||||| ||||||||| ||||||||   ||||||||||||||||| || |||||  |||||     || || |||||||||||||| |||||||    
T  19925117 acataggcaacatctacattcatttatcaatacataaactacacatgcaatgatgaaattgtcaattcatttataaaacctaaccacatgcaaactactc 19925018  T
Q  103 taattttt 110  Q
     | |||||    
T  19925017 aatttttt 19925010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 314
Target Start/End: Complemental strand, 8473888 - 8473850
Alignment:
Q  276 ttctacgttctggttatgttcagatttcctcgccagtta 314  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  8473888 ttctacgttctggttatgttcagttttcctcggcagtta 8473850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 13636119 - 13636156
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  13636119 tcctcggcagttaactaccgaggttttcctcggcagtt 13636156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 19928797 - 19928842
Alignment:
Q  291 atgttcagatttcctcgccagttagctaccgaggttttcctcggca 336  Q
    |||||||| |||||||| |||||| ||||||||||||| |||||||    
T  19928797 atgttcagttttcctcggcagttaactaccgaggttttactcggca 19928842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 6562155 - 6562195
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||| ||||||||||||||    
T  6562155 atttcctcggcagttaactaccgaggatttcctcggcagtt 6562195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 11183261 - 11183225
Alignment:
Q  303 cctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  11183261 cctcgacagttaactaccgaggttttcctcggcagtt 11183225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 15051338 - 15051382
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||||  || |||||| ||||||||||||||||||||||||    
T  15051338 tcagatttcgccggcagttaactaccgaggttttcctcggcagtt 15051382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 20353929 - 20353969
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||| ||||||||||||||||    
T  20353929 atttcctcggcagttaactaccgaagttttcctcggcagtt 20353969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 38771708 - 38771668
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| || |||||||||||||||||||||    
T  38771708 atttcctcggcagttaactcccgaggttttcctcggcagtt 38771668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 44470001 - 44470045
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||| |||||||| |||||| || |||||||||||||||||||||    
T  44470001 tcagttttcctcggcagttaactcccgaggttttcctcggcagtt 44470045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 48751405 - 48751441
Alignment:
Q  300 tttcctcgccagttagctaccgaggttttcctcggca 336  Q
    |||||||| |||||| |||||||||||||||||||||    
T  48751405 tttcctcggcagttaactaccgaggttttcctcggca 48751441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 40357976 - 40358314
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||    
T  40357976 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattctcaattttgaaatcaaccctaaccacatacaaactac 40358075  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40358076 tctaattttttttaaaaaatcaacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaat 40358175  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagat 300  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || |||| ||||||||||||||||||||    
T  40358176 tcgtgaaaatggatttggtgaagattggagagaaattgagaattttgaaggttttttggaaatgggaggttttgattctgcgttctggttatgttcagat 40358275  T
Q  301 ttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  40358276 ttcctcggcagttaactaccgaggttttcctcggcagtt 40358314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 21022584 - 21022922
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||| || |||||    
T  21022584 caacataggcaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttgaaatcaaccctaaccacatacaaactac 21022683  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    || | |||||         |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21022684 tcaatttttttaaaaaaaatcaacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaat 21022783  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagat 300  Q
    ||||||||||||||||||||||||||||| || |||||||||||| |||  | ||||||||||||||  |||||||| | ||||||||||  ||||||||    
T  21022784 tcgtgaaaatggatttggtgaagattggagagcaattgagaatttagaaattgttttggaaatgggaagttctggttttgcgttctggtttagttcagat 21022883  T
Q  301 ttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  21022884 ttcctcggcagttaactaccgaggttttcctcggcagtt 21022922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 50275111 - 50274798
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| |||| ||||||||||||||||| |||||    
T  50275111 caacataggcaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaattaaccctaaccacatgcaaactac 50275012  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50275011 tctaatttttttttaaaaattaacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatgtgcagttgatttgcttgcaat 50274912  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgg-gagattctggttctacgttctggttatgttcaga 299  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||||||||||||  || |||||||||| || | || |||||||||||    
T  50274911 tcgtgaaaatggatttggtgaagattggagagaaattgtgaattttgaagatgttttggaaatggaaaggttctggttctgcg-tatgattatgttcaga 50274813  T
Q  300 tttcctcgccagtta 314  Q
    |||||||| ||||||    
T  50274812 tttcctcggcagtta 50274798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 3 - 339
Target Start/End: Original strand, 30726439 - 30726775
Alignment:
Q  3 acataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactc 102  Q
    |||||||||||||||||||||| ||||||||   |||||||||| |||||| || |||||  |||||     || || |||||||| ||||| |||||||    
T  30726439 acataggcaacaactacattcatttatcaatacataaactacacgtgcaatgatgaaattgtcaattcatttataaaacctaaccaaatgcaaactactc 30726538  T
Q  103 taatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattc 202  Q
     ||||||| |       | ||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30726539 -aattttttttaaaaacttaacataaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattc 30726637  T
Q  203 gtgaaaatggatttggtgaagattggaaagaaattgagaattttgaa-ggttttttggaaatgggagattctggttctacgttctggttatgttcagatt 301  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||||||| || ||||||| |||||| ||||||| ||||||    
T  30726638 gtgaaaatggatttggtgaagattggagagaaattgagaattttgaatgtttttttgtaaatgggaggttgtggttctgcgttctagttatgtccagatt 30726737  T
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  30726738 tcctcggcagttaactaccgaggttttcctcggcagtt 30726775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 3 - 336
Target Start/End: Original strand, 1089282 - 1089615
Alignment:
Q  3 acataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactc 102  Q
    ||||| |||||| ||||||||| ||||||||   |||||||||| |||||| || |||||  |||||     || || |||||||||||||| |||||||    
T  1089282 acatatgcaacatctacattcatttatcaatacataaactacacttgcaatgatgaaattgtcaattcatttataaaacctaaccacatgcaaactactc 1089381  T
Q  103 taatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattc 202  Q
     |||||||         | ||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1089382 -aattttttaaaaaaacttaacataaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattc 1089480  T
Q  203 gtgaaaatggatttggtgaagattggaaagaaattgagaattttgaa-ggttttttggaaatgggagattctggttctacgttctggttatgttcagatt 301  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||||||| |||||||||||| |||||||||||| ||||||    
T  1089481 gtgaaaatggatttggtgaagattggagagaaattgagaattttgaatgtttttttgtaaatgggaggttctggttctacattctggttatgtccagatt 1089580  T
Q  302 tcctcgccagttagctaccgaggttttcctcggca 336  Q
    |||||| |||||| |||||||||||||||||||||    
T  1089581 tcctcggcagttaactaccgaggttttcctcggca 1089615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 3 - 324
Target Start/End: Original strand, 1308812 - 1309133
Alignment:
Q  3 acataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactc 102  Q
    ||||| |||||| ||||||||| ||||||||   ||||||||||||||||| || |||||  |||||     || || |||||||||||||| |||||||    
T  1308812 acatatgcaacatctacattcatttatcaatacataaactacacatgcaatgatgaaattgtcaattcatttataaaacctaaccacatgcaaactactc 1308911  T
Q  103 taatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattc 202  Q
     ||||||| |       | ||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1308912 -aatttttttaaaaaacttaacataaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattc 1309010  T
Q  203 gtgaaaatggatttggtgaagattggaaagaaattgagaattttgaa-ggttttttggaaatgggagattctggttctacgttctggttatgttcagatt 301  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| | ||||||| ||||||||| |||||||||| |||||||||||||| ||||||    
T  1309011 gtgaaaatggatttggtgaagattggagagaatttgagaattttgaatgtttttttgtaaatgggaggttctggttctgcgttctggttatgtccagatt 1309110  T
Q  302 tcctcgccagttagctaccgagg 324  Q
    |||||| |||||| |||||||||    
T  1309111 tcctcggcagttaactaccgagg 1309133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 55407483 - 55407732
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  55407483 caacataggcaacaactacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 55407582  T
Q  101 tctaatttttctnnnnnnn----tcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttg 196  Q
    |||||||||| |           | |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  55407583 tctaattttttttttttttaaaataaacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttg 55407682  T
Q  197 caattcgtgaaaatggatttggtgaagattggaaagaaattgagaatttt 246  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  55407683 caattcgtgaaaatggttttggtgaagattggagagaaattgagaatttt 55407732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 67968 - 67724
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||| | |||||||||  |||||||||||||||||||| |||||  ||||||| |||||||||||||||||||||| |||||    
T  67968 caacataggcaacaactacatttatttatcaattcataaactacacatgcaatcattaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 67869  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       | |||||||||||| ||||||| | |||||||||||||| |||||||||||||||||||||||  ||||||| ||||||||    
T  67868 tctaattttttttaaaaaataaacctaaacaaactaacatt-tcattaaaatgattgatacaacttacttgtgataatgtgcggttgattttcttgcaat 67770  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaatttt 246  Q
    |||||||||||  ||||||||||||| || ||||||||||||||||    
T  67769 tcgtgaaaatgactttggtgaagatttgagagaaattgagaatttt 67724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 51683579 - 51683332
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||| ||||||||||||||| |||||||||  |||| |||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  51683579 caacatagacaacaactacattcatttatcaattcataaaatacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 51683480  T
Q  101 tctaatttttctnnnnnnn--tcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgca 198  Q
    |||||||||| |         | |||||||||||| ||||||||| |||||||||||||| | |||||||||||||||||||| | ||||||||||||||    
T  51683479 tctaatttttttttttaaaaataaacctaaacaaactaacattatcattaaaatgattgatataacttacttgtgataatgtgtagttgatttgcttgca 51683380  T
Q  199 attcgtgaaaatggatttggtgaagattggaaagaaattgagaattttg 247  Q
    |||||||||||||| ||||||||||||||||||||| ||||||| ||||    
T  51683379 attcgtgaaaatgg-tttggtgaagattggaaagaatttgagaagtttg 51683332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 48256269 - 48256509
Alignment:
Q  3 acataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactc 102  Q
    |||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||  ||||||| |||| ||||||||||||||||| |||||||    
T  48256269 acataggcaacaactacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaattaaccctaaccacatgcaaactactc 48256368  T
Q  103 taatttttctnnnnnnn-tcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaatt 201  Q
    |||||||| |        | ||||||| |||| ||| ||||| |||||||||||||| |||| ||||||||||||||||||| |||||||| ||||||||    
T  48256369 taattttttttaaaaaaataaacctaagcaaactaatattatcattaaaatgattgatacaatttacttgtgataatgtgcagttgatttgtttgcaatt 48256468  T
Q  202 cgtgaaaatggatttggtgaagattggaaagaaattgagaa 242  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  48256469 cgtgaaaatggctttggtgaagattggaaagaatttgagaa 48256509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 50901857 - 50901637
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| |||||||||||||||||||| | |||||    
T  50901857 caacatagacaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgtaaactac 50901758  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       | |||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||||||||  ||||||||||||||||    
T  50901757 tctaattttt-tttaaaaataaacctaaacaaactaacattatcattaaaatgattgatgcaacttacttgtgataatgtgcgattgatttgcttgcaat 50901659  T
Q  201 tcgtgaaaatggatttggtgaa 222  Q
    ||  | ||||||||||||||||    
T  50901658 tcacggaaatggatttggtgaa 50901637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 122 - 339
Target Start/End: Complemental strand, 8109649 - 8109430
Alignment:
Q  122 aacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgtgaaaatggatttggtga 221  Q
    |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  8109649 aacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaatgaatttggtga 8109550  T
Q  222 agattggaaagaaattgagaattttgaaggttttttggaaatggga---gattctggttctacgttctggttatgttcagatttcctcgccagttagcta 318  Q
    |||||||| |||||||||||| |||  ||   ||||| |||||| |   | ||||| |||| || |||| ||||||||||||||||||  |||||| ||     
T  8109549 agattggagagaaattgagaactttagagaagttttgaaaatggtatatgtttctgtttctgcg-tctgtttatgttcagatttcctcagcagttaactc 8109451  T
Q  319 ccgaggttttcctcggcagtt 339  Q
    |||||||||||||||||||||    
T  8109450 ccgaggttttcctcggcagtt 8109430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 21538158 - 21538377
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  |||||||| ||||||||  |||||||  |||||     || ||||||||||||||||| |||||    
T  21538158 caacataggcaacaactacattcatttatcaattcataaactacccatgcaatgttcaaattgtcaattcattcataaaccctaaccacatgcaaactac 21538257  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |   ||||||         | ||| |||||||| ||||||||||||||||||||||||  |||||||||||||||||||||   ||||||||||||||||    
T  21538258 ttatatttttaaaaaaacttaaac-taaacaaactaacattatgattaaaatgattgatgcaacttacttgtgataatgtgtggttgatttgcttgcaat 21538356  T
Q  201 tcgtgaaaatggatttggtga 221  Q
    |||||||||||| ||||||||    
T  21538357 tcgtgaaaatggctttggtga 21538377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 37021779 - 37021887
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| |||||||| |||||||||| || |||||    
T  37021779 caacatatgcaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaactctaaccacatacaaactac 37021878  T
Q  101 tctaatttt 109  Q
    |||||||||    
T  37021879 tctaatttt 37021887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 11083715 - 11083923
Alignment:
Q  4 cataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactct 103  Q
    ||||||||||||||||||||| ||||||||   ||||||||||||||||| ||||||||  |||||     || ||||||||||||||||| |||||||     
T  11083715 cataggcaacaactacattcatttatcaatacataaactacacatgcaatgatcaaattgtcaattcattcataaaccctaaccacatgcaaactactc- 11083813  T
Q  104 aatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcg 203  Q
    ||||||| |       | |||||||||||| |||||||| ||||  ||||||| |    |||||||||||||||||||    ||||| ||||||||||||    
T  11083814 aattttttttcaaaacttaacctaaacaaactaacattaagattgcaatgattaatggtacttacttgtgataatgtggggatgattggcttgcaattcg 11083913  T
Q  204 tgaaaatgga 213  Q
    ||||||||||    
T  11083914 tgaaaatgga 11083923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 10753136 - 10753312
Alignment:
Q  4 cataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactct 103  Q
    ||||||||||| ||||||||| |||||||||  |||||||||||||||||  |||||||  |||||     || ||||||||||||||||| |||||||     
T  10753136 cataggcaacatctacattcatttatcaattcataaactacacatgcaatgttcaaattgtcaattcattcataaaccctaaccacatgcaaactactca 10753235  T
Q  104 aatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtg 181  Q
     |||||| |       | || ||||||||| ||||||||||||||||||||||||  |||||||||||| ||||||||    
T  10753236 tattttt-taaaaaacttaaactaaacaaactaacattatgattaaaatgattgatgcaacttacttgtcataatgtg 10753312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 10966905 - 10967081
Alignment:
Q  4 cataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactct 103  Q
    ||||||||||| ||||||||| |||||||||  |||||||||||||||||  |||||||  |||||     || ||||||||||||||||| |||||||     
T  10966905 cataggcaacatctacattcatttatcaattcataaactacacatgcaatgttcaaattgtcaattcattcataaaccctaaccacatgcaaactactca 10967004  T
Q  104 aatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtg 181  Q
     |||||| |       | || ||||||||| ||||||||||||||||||||||||  |||||||||||| ||||||||    
T  10967005 tattttt-taaaaaacttaaactaaacaaactaacattatgattaaaatgattgatgcaacttacttgtcataatgtg 10967081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 176 - 339
Target Start/End: Original strand, 37021933 - 37022095
Alignment:
Q  176 aatgtgcatttgatttgcttgcaattcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctgg 275  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||  || ||||||    |||||||||||| |  ||||||    
T  37021933 aatgtgcagttgatttgcttgctattcgtgaaaatgaatttggtgaagattggagagaaattgttaaatttgaaaaagttttggaaatggaaagttctgg 37022032  T
Q  276 ttctacgttctggttatgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||| ||   || ||| || ||||||| |||| |||||| || |||||||||||||||| ||||    
T  37022033 ttctgcg-aatgattaagtccagattttctcggcagttaactgccgaggttttcctcggtagtt 37022095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 276 - 337
Target Start/End: Original strand, 41800908 - 41800969
Alignment:
Q  276 ttctacgttctggttatgttcagatttcctcgccagttagctaccgaggttttcctcggcag 337  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  41800908 ttctgcgttctggttatgttcagatttcctcggcagttaactaccgaggttttcttcggcag 41800969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 14315751 - 14315540
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||||||||| || |||||  |||||     || || |||||||||||||| |||||    
T  14315751 caacataggcaacaactacattcatttatcaattcataaactacacatgcaatgatgaaattgtcaattcattcataaaacctaaccacatgcaaactac 14315652  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    || ||   || |       | |||||||||||| |||||||| ||||  ||||||| |    ||||||||| |||||||||    ||||| |||||||||    
T  14315651 tcaaaaaatt-tcaaaaacttaacctaaacaaactaacattaagattgcaatgattaatggtacttacttgggataatgtggggatgattggcttgcaat 14315553  T
Q  201 tcgtgaaaatgga 213  Q
    |||||||||||||    
T  14315552 tcgtgaaaatgga 14315540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 37563248 - 37563314
Alignment:
Q  273 tggttctacgttctggttatgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||  |||||||||||||| || |||||||| |||||| ||||||||||||||||||||||||    
T  37563248 tggttctgggttctggttatgttgagttttcctcggcagttaactaccgaggttttcctcggcagtt 37563314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 46436618 - 46436536
Alignment:
Q  4 cataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaac 86  Q
    |||| |||||||||||||||  |||| ||||  ||||||||||||||||||||||||||  ||||||| |||| |||||||||    
T  46436618 cataagcaacaactacattcgtttattaattcataaactacacatgcaatcatcaaattgtcaattttaaaattaaccctaac 46436536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 54633983 - 54634049
Alignment:
Q  273 tggttctacgttctggttatgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||  |||||||||||||| || |||||||| |||||| ||||||||||||||||||||||||    
T  54633983 tggttctgggttctggttatgttgagttttcctcggcagttaactaccgaggttttcctcggcagtt 54634049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 14297502 - 14297441
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaatt 62  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||||||||| || |||||    
T  14297502 caacataggcaacaactacattcatttatcaattcataaactacacatgcaatgatgaaatt 14297441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 39773500 - 39773443
Alignment:
Q  282 gttctggttatgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||||||||| || |||||||| |||||| ||||||||||||||||||||||||    
T  39773500 gttctggttatgttgagttttcctcggcagttaactaccgaggttttcctcggcagtt 39773443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 31425306 - 31425352
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||    
T  31425306 gttcagatttcctcggcagttaactaccgaggttttcctcggcagtt 31425352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 49169085 - 49169131
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||||| |||||| |||||||||| |||||||||||||    
T  49169085 gttcagatttcctcggcagttaactaccgaggtattcctcggcagtt 49169131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 211
Target Start/End: Original strand, 41933439 - 41933527
Alignment:
Q  122 aacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgtgaaaatg 211  Q
    |||||||||||| |||||||| ||||| | ||||| |  | ||||||||||||||||||| |  ||| |||||||||| |||||||||||    
T  41933439 aacctaaacaaactaacattaagattacattgattaattctacttacttgtgataatgtggagatga-ttgcttgcaaatcgtgaaaatg 41933527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 15995805 - 15995761
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||| |||||||| |||||| ||||||||||||||||||||||||    
T  15995805 tcagttttcctcggcagttaactaccgaggttttcctcggcagtt 15995761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 15999793 - 15999833
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  15999793 atttcctcggcagttaactaccgaggttttcctcggcagtt 15999833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 19069270 - 19069226
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||| |||||||| |||||| ||||||||||||||||||||||||    
T  19069270 tcagttttcctcggcagttaactaccgaggttttcctcggcagtt 19069226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 26932663 - 26932623
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  26932663 atttcctcggcagttaactaccgaggttttcctcggcagtt 26932623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 51492154 - 51492110
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||| |||||| |||||||||||||||| |||||||    
T  51492154 tcagatttcctcggcagttaactaccgaggttttcctaggcagtt 51492110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 40354768 - 40354705
Alignment:
Q  185 ttgatttgcttgcaattcgt-gaaa-atggatttggtgaagattggaaagaaattgagaatttt 246  Q
    |||||||||||||||||||| |||| | | |||||| |||||||||| ||||||||||||||||    
T  40354768 ttgatttgcttgcaattcgtagaaagaagtatttggcgaagattggagagaaattgagaatttt 40354705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 46436501 - 46436410
Alignment:
Q  122 aacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgtgaaaatgga 213  Q
    |||||||||||| ||||||||  |||  ||||||| |    |||||||||||||||||||    ||||| ||||||||||||||||||||||    
T  46436501 aacctaaacaaactaacattaacattgcaatgattaatggtacttacttgtgataatgtggggatgattggcttgcaattcgtgaaaatgga 46436410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 37563150 - 37563104
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||| |||||||||  ||||| ||||||||||||||||||||||||    
T  37563150 gttcatatttcctcggtagttaactaccgaggttttcctcggcagtt 37563104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 37563225 - 37563183
Alignment:
Q  297 agatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||| |||||| |||||||||||||| |||||||||    
T  37563225 agatttcctcggcagttaactaccgaggttttcttcggcagtt 37563183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 39773525 - 39773567
Alignment:
Q  297 agatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||| |||||| |||||||||||||| |||||||||    
T  39773525 agatttcctcggcagttaactaccgaggttttcttcggcagtt 39773567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 54633960 - 54633918
Alignment:
Q  297 agatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||| |||||| |||||||||||||| |||||||||    
T  54633960 agatttcctcggcagttaactaccgaggttttcttcggcagtt 54633918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 958591 - 958628
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  958591 tcctcggcagttaactaccgaggttttcctcggcagtt 958628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 6178107 - 6178144
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  6178107 tcctcggcagttaactaccgaggttttcctcggcagtt 6178144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 9890070 - 9890033
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  9890070 tcctcggcagttaactaccgaggttttcctcggcagtt 9890033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 37021903 - 37021936
Alignment:
Q  120 tcaacctaaacaaattaacattatgattaaaatg 153  Q
    |||||||||||||||||||||||| |||||||||    
T  37021903 tcaacctaaacaaattaacattatcattaaaatg 37021936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 41795487 - 41795438
Alignment:
Q  290 tatgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||||| |||||| |||||||||||||| ||| |||||    
T  41795487 tatgttcagttttcctcggcagttaactaccgaggttttcttcgacagtt 41795438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 49094160 - 49094123
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  49094160 tcctcggcagttaactaccgaggttttcctcggcagtt 49094123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 6181762 - 6181810
Alignment:
Q  276 ttctacgttctggttatgttcagatttcctcgccagttagctaccgagg 324  Q
    |||| |||||||||||||||||| |||||||| |||||| || ||||||    
T  6181762 ttctgcgttctggttatgttcagttttcctcggcagttaactgccgagg 6181810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 40354692 - 40354644
Alignment:
Q  291 atgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| ||| |||| |||||| |||||||||||||| |||||||||    
T  40354692 atgttcagttttgctcggcagttaactaccgaggttttcttcggcagtt 40354644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 56)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 3501588 - 3501929
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||    
T  3501588 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattctcaattttgaaatcaaccctaaccacatacaaactac 3501687  T
Q  101 tctaatttttctnnnnnnn--tcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgca 198  Q
    |||||||||| |         |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3501688 tctaatttttttttttaaaaatcaacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgca 3501787  T
Q  199 attcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcag 298  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  3501788 attcgtgaaaatggatttggtgaagattgaaaagaaattgagaatttagaaggttttttggaaatgggaggttctggttctgcgttctggttatgttcag 3501887  T
Q  299 atttcctc-gccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| | |||||| ||||||||||||||||||||||||    
T  3501888 atttcctcgggcagttaactaccgaggttttcctcggcagtt 3501929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 50963331 - 50963014
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| || |||||    
T  50963331 caacataggcaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 50963232  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  50963231 tctaatttttttaaaaaaatcaacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtacacttgatttgcttgcaat 50963132  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagat 300  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||  | ||||||||||||||     ||||||| ||||||||||  ||||||||    
T  50963131 tcgtgaaaatggatttggtgaagattggagagaaattgagaattttgaaattgttttggaaatggga----atggttctgcgttctggtttagttcagat 50963036  T
Q  301 ttcctcgccagttagctaccga 322  Q
    ||||||  |||||| |||||||    
T  50963035 ttcctcagcagttaactaccga 50963014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 42165539 - 42165205
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| || |||||    
T  42165539 caacataggcaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 42165440  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  42165439 tctaattttt-tttaaaaatcaacctaaacaaattaacattatgattaaaatgatggacacaacttacttgtgataatgtgcagttgatttgcttgcaat 42165341  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagat 300  Q
    ||||||||    ||||||||||||||||| | || ||| ||||||||     |||| | |||||||  | ||||||||| ||||||||||  ||||||||    
T  42165340 tcgtgaaagaatatttggtgaagattggagaaaatttgtgaattttgtgaagttttggaaaatggggaagtctggttctgcgttctggtttagttcagat 42165241  T
Q  301 ttcctcgccagttagctaccgaggttttcctcggca 336  Q
    ||||||| |||||| |||||||||||||||||||||    
T  42165240 ttcctcggcagttaactaccgaggttttcctcggca 42165205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 4008019 - 4008357
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||  ||||||| ||||||||||||||||||| || |||||    
T  4008019 caacataggcaacaactacattcatttatcaattcctaaactacacatgcaatcatcgaattgtcaattttaaaatcaaccctaaccacatacaaactac 4008118  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  4008119 tctaattttttttaaaaaatcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcagttgatttgcttgctat 4008218  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagat 300  Q
    ||||||||   |||||||||||||||||| | || ||| ||||||||     |||| | |||| ||  | ||||||||| ||||||||||  ||||||||    
T  4008219 tcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttggaaaatcgggaagtctggttctgcgttctggtttagttcagat 4008318  T
Q  301 ttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||| |||||| || |||||||||| |||| |||||    
T  4008319 ttcctcggcagttaactcccgaggtttttctcgacagtt 4008357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 50216574 - 50216889
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  50216574 caacataggcaacaactacattcatttatcaattcctaaattacacatgcaatcatcaaattatcaattttaaaatcaaccctaaccacatgcaaactac 50216673  T
Q  101 tctaatttttc--tnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgca 198  Q
    ||||||||     |       |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50216674 tctaatttaaaaataaaaaaatcaacctaaacaaatttacattatcattaaaatgattgacacaacttacttgtgataatgtgcagttgatttgcttgca 50216773  T
Q  199 attcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgg-gagattctggttctacgttctggttatgttca 297  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||  | ||||||||||||  || |||||||||| || | || |||||||||    
T  50216774 attcgtgaaaatggatttggtgaagattggagagaaattgtgaattttgaatatgttttggaaatggaaaggttctggttctgcg-tatgattatgttca 50216872  T
Q  298 gatttcctcgccagtta 314  Q
    ||||| |||| ||||||    
T  50216873 gattttctcggcagtta 50216889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 597135 - 596822
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  |||| || |||||||||||||||||||||| |||||    
T  597135 caacatgggcaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaatatttaaatcaaccctaaccacatgcaaactac 597036  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    ||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  597035 tctaatttaaa-aaaaaaatcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcaattgatttgcttgcaat 596937  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaat-gggagattctggttctacgttctggttatgttcaga 299  Q
    ||||||||||||||||||||||||||||| | |||||| ||||||||     |||| | |||| ||||  |||||||||| ||||||||||  |||||||    
T  596936 tcgtgaaaatggatttggtgaagattggagaaaaattgtgaattttgtgaagttttggaaaatggggaagttctggttctgcgttctggtttagttcaga 596837  T
Q  300 tttcctcgccagtta 314  Q
    |||||||| ||||||    
T  596836 tttcctcggcagtta 596822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 3 - 314
Target Start/End: Complemental strand, 3976081 - 3975770
Alignment:
Q  3 acataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactc 102  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| || |||||||    
T  3976081 acataggcaacaactacattcaattgccaatttctaaactacacatgcaatcatcaaattgtcaatttttaaatcaaccctaaccacatacaaactactc 3975982  T
Q  103 taatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattc 202  Q
    |||||||| |       |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3975981 taatttttttaaaaaaatcaacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattc 3975882  T
Q  203 gtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagattt 302  Q
    ||||||   |||||||||||||||||| | || ||| ||||||||     |||| | |||||||  | ||| ||||| ||||||||||  ||||||||||    
T  3975881 gtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttggaaaatggggaagtctagttctgcgttctggtttagttcagattt 3975782  T
Q  303 cctcgccagtta 314  Q
    ||||| ||||||    
T  3975781 cctcggcagtta 3975770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 20917713 - 20917957
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  ||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  20917713 caacataggcaacaactacattcatttatcaattcataaactatacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 20917812  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       | |||||||||||| |||||| || ||||| |||||||| |||||||||||||||||||||||  ||||||||||||||||    
T  20917813 tctaattttttttaaaaaataaacctaaacaaactaacat-atcattaagatgattgatacaacttacttgtgataatgtgcgattgatttgcttgcaat 20917911  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaatttt 246  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||    
T  20917912 tcgtgaaaatggctttggtgaagattggagagaaattgagaatttt 20917957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 20926675 - 20926919
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  ||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  20926675 caacataggcaacaactacattcatttatcaattcataaactatacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 20926774  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       | |||||||||||| |||||| || ||||| |||||||| |||||||||||||||||||||||  ||||||||||||||||    
T  20926775 tctaattttttttaaaaaataaacctaaacaaactaacat-atcattaagatgattgatacaacttacttgtgataatgtgcgattgatttgcttgcaat 20926873  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaatttt 246  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||    
T  20926874 tcgtgaaaatggctttggtgaagattggagagaaattgagaatttt 20926919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 42756530 - 42756289
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||| |||||||||||| || |||||||||  ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  42756530 caacatagacaacaactacatccatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 42756431  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       | |||||||||||| ||||||||| |||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  42756430 tctaatttttttttaaaaataaacctaaacaaactaacattattattaaaatgattgatacaactgacttgtgataatgtgcagttgatttgcttgcaat 42756331  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaa 242  Q
    |||||||||||  ||||||||||||||||||||| |||||||    
T  42756330 tcgtgaaaatgactttggtgaagattggaaagaatttgagaa 42756289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 49196143 - 49196388
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||  ||||||| ||||||||| |||||||||||| |||||    
T  49196143 caacataggcaacaactacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccttaaccacatgcaaactac 49196242  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       | |||||||||||| ||||||||| |||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||||    
T  49196243 tctaatttttttttaaaaataaacctaaacaaactaacattatcattaaagtgattgatacaacttacttgtgataatgtgcagttgattttcttgcaat 49196342  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaatttt 246  Q
    |||||||||||  ||||||||||||| || ||||||||||||||||    
T  49196343 tcgtgaaaatgactttggtgaagattagagagaaattgagaatttt 49196388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 5 - 267
Target Start/End: Original strand, 47073907 - 47074171
Alignment:
Q  5 ataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactcta 104  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||  ||||||| ||||||||||||||||||| || |||||||||    
T  47073907 ataggcaacaactacattcatttatcaattcctaaactacacatgcattcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactactcta 47074006  T
Q  105 att--tttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattc 202  Q
     ||  ||| |       |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  47074007 tttattttttttaaaaatcaacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatgtgcggttgatttgcttgctattc 47074106  T
Q  203 gtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatggga 267  Q
    ||||||||||||||||||||||||| | ||||||||  || ||||||  |||||||  |||||||    
T  47074107 gtgaaaatggatttggtgaagattgaagagaaattgttaaatttgaaatttttttgataatggga 47074171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 51807346 - 51807082
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||| ||||||| | |||||||||||| |||||    
T  51807346 caacatagacaacaactacattcatttatcaatttctaaactacacatgcaatcatcaaattgtcaattttaaaatcaatcataaccacatgcaaactac 51807247  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       | |||||||||||| | ||||||| |||||||||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  51807246 tctaatttttttttaaaaataaacctaaacaaactgacattatcattaaaatgattgatacaacttacttgtgataatgtacagttgatttgcttgcaat 51807147  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgg 265  Q
    | ||||||||   |||||||||||||||| |||||||| |||||||| ||   ||||||||||||    
T  51807146 ttgtgaaaataactttggtgaagattggagagaaattgtgaattttggagaagttttggaaatgg 51807082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 30255698 - 30255939
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||| |||||   |||||| ||||||||||||||||||  ||| ||| |||||||||||||||||||||| |||||    
T  30255698 caacataggcaacaactacattcatttagcaattcacaaactaaacatgcaatcatcaaattgtcaactttaaaatcaaccctaaccacatgcaaactac 30255797  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       | |||||||||||| |||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  30255798 tctaatttttttttaaaaataaacctaaacaaactaaccttatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaat 30255897  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaa 242  Q
    |||||||||||  ||||||||||||||||||||| |||||||    
T  30255898 tcgtgaaaatgactttggtgaagattggaaagaatttgagaa 30255939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 48889120 - 48888867
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  48889120 caacataggcaacaactacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 48889021  T
Q  101 tctaatttttc-------tnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgc 193  Q
    ||||||||||        |       | ||| |||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||    
T  48889020 tctaattttttatttttatttttaaataaacttaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgc 48888921  T
Q  194 ttgcaattcgtgaaaatggatttggtgaagattggaaagaaattgagaattttg 247  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||||| ||||    
T  48888920 ttgcaattcgtgaaaatgactttggtgaagattggaaagaatttgagaagtttg 48888867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 44230090 - 44229881
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  44230090 caacataggcaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 44229991  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    ||| |||||| |       | |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  44229990 tctgattttttt--ttaaataaacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcaattgatttgcttgcaat 44229893  T
Q  201 tcgtgaaaatgg 212  Q
    ||||||||||||    
T  44229892 tcgtgaaaatgg 44229881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 26 - 250
Target Start/End: Complemental strand, 48563295 - 48563070
Alignment:
Q  26 ttatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactctaatttttctnnnnnnn-tcaac 124  Q
    |||||||||  || |||||||||||||||||||||||  ||||||| ||||||||| |||||||||||| ||||||||||||||| |        | |||    
T  48563295 ttatcaattcatagactacacatgcaatcatcaaattgtcaattttaaaatcaaccttaaccacatgcaaactactctaatttttttttttaaaataaac 48563196  T
Q  125 ctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgtgaaaatggatttggtgaaga 224  Q
    ||||||||| ||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| |||||||||  |||| ||||||    
T  48563195 ctaaacaaactaacattatcattaaaatgattgatacaacttacttatgataatgtgcagttgatttgcttgcaatttgtgaaaatgattttgatgaaga 48563096  T
Q  225 ttggaaagaaattgagaattttgaag 250  Q
    ||| |||||| ||||||| |||||||    
T  48563095 ttgaaaagaatttgagaagtttgaag 48563070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 42807498 - 42807572
Alignment:
Q  172 tgataatgtgcatttgatttgcttgcaattcgtgaaaatggatttggtgaagattggaaagaaattgagaatttt 246  Q
    |||||||||||  ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||    
T  42807498 tgataatgtgcggttgatttgcttgcaatttgtgaaaatggctttggtgaagattggagagaaattgagaatttt 42807572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 49144427 - 49144490
Alignment:
Q  276 ttctacgttctggttatgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||    
T  49144427 ttctgcgttctggttatgttcagatttcctcggcagttaactaccgaggttttcttcggcagtt 49144490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 42805958 - 42806061
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||| ||||||||||||||| |||||||||  ||||||| ||||||||| |||||        |||| ||||||||||||||||||| || |||||    
T  42805958 caacatagacaacaactacattcatttatcaattcataaactatacatgcaattatcaa--------ttttaaaatcaaccctaaccacatacaaactac 42806049  T
Q  101 tctaatttttct 112  Q
    ||||||||||||    
T  42806050 tctaatttttct 42806061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 276 - 337
Target Start/End: Original strand, 2967896 - 2967957
Alignment:
Q  276 ttctacgttctggttatgttcagatttcctcgccagttagctaccgaggttttcctcggcag 337  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  2967896 ttctgcgttctggttatgttcagatttcctcggcagttaactaccgaggttttcttcggcag 2967957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 2647890 - 2647828
Alignment:
Q  185 ttgatttgcttgcaattcgtgaaaatggatttggtgaagattggaaagaaattgagaattttg 247  Q
    ||||||||||||||||||||||||   ||||||| |||||||||| |||||||||||||||||    
T  2647890 ttgatttgcttgcaattcgtgaaagaagatttggcgaagattggagagaaattgagaattttg 2647828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 41844332 - 41844398
Alignment:
Q  273 tggttctacgttctggttatgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||  |||||||||||||| || |||||||| |||||| ||||||||||||||||||||||||    
T  41844332 tggttctgggttctggttatgttgagttttcctcggcagttaactaccgaggttttcctcggcagtt 41844398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 46697796 - 46697750
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||    
T  46697796 gttcagatttcctcggcagttaactaccgaggttttcctcggcagtt 46697750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 31045302 - 31045348
Alignment:
Q  14 aactacattcaattatcaatttctaaactacacatgcaatcatcaaa 60  Q
    ||||||||||  |||||||||| ||||||||||||||||||||||||    
T  31045302 aactacattcgtttatcaatttataaactacacatgcaatcatcaaa 31045348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 35743570 - 35743616
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||||    
T  35743570 gttcatatttcctcggcagttaactaccgaggttttcctcggcagtt 35743616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 50477265 - 50477219
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||| |||||||||| |||||| ||||||||||||||||||||||||    
T  50477265 gttcggatttcctcggcagttaactaccgaggttttcctcggcagtt 50477219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 600534 - 600578
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||| |||||| |||||||||||||||||| |||||    
T  600534 tcagatttcctcggcagttaactaccgaggttttcctcgacagtt 600578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 2271439 - 2271395
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||| |||||| || |||||||||||||||||||||    
T  2271439 tcagatttcctcggcagttaactcccgaggttttcctcggcagtt 2271395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 4004929 - 4004885
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||| |||||| |||||||||||||||||| |||||    
T  4004929 tcagatttcctcggcagttaactaccgaggttttcctcgacagtt 4004885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 30943268 - 30943228
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  30943268 atttcctcggcagttaactaccgaggttttcctcggcagtt 30943228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 35743500 - 35743457
Alignment:
Q  271 tctggttctacgttctggttatgttcagatttcctcgccagtta 314  Q
    ||||||||| |||||||||||||||||| |||||||| ||||||    
T  35743500 tctggttctgcgttctggttatgttcagttttcctcggcagtta 35743457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Original strand, 1835252 - 1835294
Alignment:
Q  297 agatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||| |||||| |||||||||||||| |||||||||    
T  1835252 agatttcctcggcagttaactaccgaggttttcttcggcagtt 1835294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 34049157 - 34049119
Alignment:
Q  301 ttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  34049157 ttcctcggcagttaactaccgaggttttcctcggcagtt 34049119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 41844309 - 41844267
Alignment:
Q  297 agatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||| |||||| |||||||||||||| |||||||||    
T  41844309 agatttcctcggcagttaactaccgaggttttcttcggcagtt 41844267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 54389872 - 54389834
Alignment:
Q  301 ttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  54389872 ttcctcggcagttaactaccgaggttttcctcggcagtt 54389834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 2647696 - 2647733
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  2647696 tcctcggcagttaactaccgaggttttcctcggcagtt 2647733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 41803074 - 41803037
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  41803074 tcctcggcagttaactaccgaggttttcctcggcagtt 41803037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 43476268 - 43476231
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  43476268 tcctcggcagttaactaccgaggttttcctcggcagtt 43476231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 46402324 - 46402373
Alignment:
Q  290 tatgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||||| |||||| |||||||||||||| ||| |||||    
T  46402324 tatgttcagttttcctcggcagttaactaccgaggttttcttcgacagtt 46402373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 49268834 - 49268879
Alignment:
Q  294 ttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||||| ||| |||||| ||||||| ||||||||||||||||    
T  49268834 ttcagatttcttcggcagttaactaccgatgttttcctcggcagtt 49268879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 55385213 - 55385176
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  55385213 tcctcgacagttaactaccgaggttttcctcggcagtt 55385176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 2647816 - 2647768
Alignment:
Q  291 atgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| |||||||| |||||| | |||||||||||| |||||||||    
T  2647816 atgttcagttttcctcggcagttaaccaccgaggttttcttcggcagtt 2647768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 2743481 - 2743437
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||| |||||||| |||||| || |||||||||||||||||||||    
T  2743481 tcagttttcctcggcagttaactcccgaggttttcctcggcagtt 2743437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 3953209 - 3953249
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| || |||||||||||||||||||||    
T  3953209 atttcctcggcagttaactcccgaggttttcctcggcagtt 3953249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 4002495 - 4002539
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||| |||||||| |||||| || |||||||||||||||||||||    
T  4002495 tcagttttcctcggcagttaactcccgaggttttcctcggcagtt 4002539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 6745320 - 6745360
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| |||||||||||||||| |||||||    
T  6745320 atttcctcggcagttaactaccgaggttttccttggcagtt 6745360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 8156587 - 8156547
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| || |||||||||||||||||||||    
T  8156587 atttcctcggcagttaactgccgaggttttcctcggcagtt 8156547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 20918009 - 20918045
Alignment:
Q  303 cctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  20918009 cctcggcagttaactaccgaggttttcctcggcagtt 20918045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 20926971 - 20927007
Alignment:
Q  303 cctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  20926971 cctcggcagttaactaccgaggttttcctcggcagtt 20927007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 42166404 - 42166444
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||| ||||||||||||||||    
T  42166404 atttcctcggcagttaactaccgaagttttcctcggcagtt 42166444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 44227187 - 44227151
Alignment:
Q  303 cctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  44227187 cctcggcagttaactaccgaggttttcctcggcagtt 44227151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 44227278 - 44227246
Alignment:
Q  214 tttggtgaagattggaaagaaattgagaatttt 246  Q
    |||||||||||||||| ||||||||||||||||    
T  44227278 tttggtgaagattggagagaaattgagaatttt 44227246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 46389060 - 46389012
Alignment:
Q  276 ttctacgttctggttatgttcagatttcctcgccagttagctaccgagg 324  Q
    |||| |||||||||||||||||| |||||||| |||||| || ||||||    
T  46389060 ttctgcgttctggttatgttcagttttcctcggcagttaactgccgagg 46389012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 46701996 - 46702044
Alignment:
Q  276 ttctacgttctggttatgttcagatttcctcgccagttagctaccgagg 324  Q
    |||| |||||||||||||||||| |||||||| |||||| || ||||||    
T  46701996 ttctgcgttctggttatgttcagttttcctcggcagttaactgccgagg 46702044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 52387881 - 52387837
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||| |||||| ||||||| |||||| |||||||||    
T  52387881 tcagatttcctcggcagttaactaccgaagttttcgtcggcagtt 52387837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 5 - 339
Target Start/End: Complemental strand, 28877016 - 28876682
Alignment:
Q  5 ataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactcta 104  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| || |||||||||    
T  28877016 ataggcaacaactacatttaattatcaatttctaaactacacatgcaatcatcaaattctcaattttgaattcaaccctaaccacatacaaactactcta 28876917  T
Q  105 atttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgt 204  Q
    |||||| |       |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  28876916 atttttttaaaaaaatcaacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatggccacttgatttgcttgcaattcgt 28876817  T
Q  205 gaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagatttcc 304  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  28876816 gaaaatggatttggggaagattggagagaaattgagaattttgaaggttttttggaaatgggaggttctggttctgcgttctggttatgttcagatttcc 28876717  T
Q  305 tcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||| |||||| || |||||||||||||||| ||||    
T  28876716 tcggcagttaactgccgaggttttcctcgggagtt 28876682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 8580201 - 8580514
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| || |||||    
T  8580201 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattgtcaattttgaaatcaaccctaaccacatacaaactac 8580300  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  8580301 tctaattttttttaaaaaatcaacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttggtttgcttgcaat 8580400  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagat 300  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| ||  ||||||||||||||||  |    
T  8580401 tcgtgaaaatggatttggtgaagattggagagaaattgagaatttagaaggttttttggaaatgggaggttctggtactgtgttctggttatgttcaatt 8580500  T
Q  301 ttcctcgccagtta 314  Q
    ||||||| ||||||    
T  8580501 ttcctcggcagtta 8580514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 14385 - 14703
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||| | ||||||||| ||||||||| |||||||||||||||||  ||||||||||||||||||||||||||| || |||||    
T  14385 caacataggcaacaactacatttatttatcaattcctaaactacgcatgcaatcatcaaattttcaattttgaaatcaaccctaaccacatacaaactac 14484  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14485 tctaattttttttaaaaaatcaacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaat 14584  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagat 300  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||  | ||||||||||||||  |||||||||| ||||||||||  ||||||||    
T  14585 tcgtgaaaatggatttgttgaagattggagagaaattgagaattttgaaattgttttggaaatgggaagttctggttctgcgttctggtttagttcagat 14684  T
Q  301 ttcctcgccagttagctac 319  Q
    ||||||| |||||| ||||    
T  14685 ttcctcggcagttaactac 14703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 7757701 - 7757364
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| || |||||    
T  7757701 caacataggcaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 7757602  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7757601 tctaattttttttaaaaaatcaacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcagttgatttgcttgcaat 7757502  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagat 300  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||  | |||||||||||| |  |||||||||| ||   || ||| || |||||    
T  7757501 tcgtgaaaatagatttggtgaagattggagagaaattgagaattttgaaattgttttggaaatggaaagttctggttctgcg-agtgattaagtccagat 7757403  T
Q  301 ttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||| |||||| ||| ||||||||||||||||||||    
T  7757402 ttcctcggcagttaactagcgaggttttcctcggcagtt 7757364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 3 - 324
Target Start/End: Original strand, 28241497 - 28241818
Alignment:
Q  3 acataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactc 102  Q
    |||||||||||| ||||||||| ||||||||   ||||||||||||||||| || |||||  |||||     || || |||||||||||||| |||||||    
T  28241497 acataggcaacatctacattcatttatcaatacataaactacacatgcaatgatgaaattgtcaattcatttataaaacctaaccacatgcaaactactc 28241596  T
Q  103 taatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattc 202  Q
     ||||||| |       | ||| |||||||||||||||||  |||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||    
T  28241597 -aattttttttaaaaacttaacataaacaaattaacattaacattaaaatgattggtacaacttacttgtgataatgtgcacttgatttgcttgcaattc 28241695  T
Q  203 gtgaaaatggatttggtgaagattggaaagaaattgagaattttgaa-ggttttttggaaatgggagattctggttctacgttctggttatgttcagatt 301  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| | ||||||| ||||||||| |||||||||| |||||||||||||| ||||||    
T  28241696 gtgaaaatggatttggtgaagattggagagaatttgagaattttgaatgtttttttgtaaatgggaggttctggttctgcgttctggttatgtccagatt 28241795  T
Q  302 tcctcgccagttagctaccgagg 324  Q
    |||||| |||||| |||||||||    
T  28241796 tcctcggcagttaactaccgagg 28241818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 512468 - 512714
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||| ||||||||||||||| |||||||||  ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  512468 caacatagacaacaactacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 512567  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||| ||||| |       | |||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  512568 tctattttttttttaaaaataaacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtacagttgatttgcttgcaat 512667  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttg 247  Q
    || ||||||||| ||||||||||||||||||||| ||||||| ||||    
T  512668 tcatgaaaatggctttggtgaagattggaaagaatttgagaagtttg 512714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 19228368 - 19228614
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  19228368 caacataggcaacaactacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 19228467  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    | || |||||         | |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  19228468 tatatttttttaaaaaaaataaacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaat 19228567  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttg 247  Q
    |||||||||||  ||||||||||||||||||||| ||||||| ||||    
T  19228568 tcgtgaaaatgattttggtgaagattggaaagaatttgagaagtttg 19228614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 38968474 - 38968231
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||  ||||||| |||| ||||||||||||||||| |||||    
T  38968474 caacataggcaacaactacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaataaaccctaaccacatgcaaactac 38968375  T
Q  101 tctaatttttctnnnnnnntc--aacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgca 198  Q
    |||||||||| |           ||||| |||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  38968374 tctaatttttttttttaaaaagaaaccttaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgca 38968275  T
Q  199 attcgtgaaaatggatttggtgaagattggaaagaaattgagaa 242  Q
    |||||||||||||  ||||||||||||||||||||| |||||||    
T  38968274 attcgtgaaaatgactttggtgaagattggaaagaatttgagaa 38968231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 42537526 - 42537276
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||  ||||||| |||| ||||||||| ||||||| |||||    
T  42537526 caacataggcaacaactacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaattaaccctaacaacatgcaaactac 42537427  T
Q  101 tctaatttttctnnnnnnntcaa------cctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgct 194  Q
    |||||||||| |       | ||      ||||||||||  |||||||| |||||||||||||| ||||||| |||||||||||||||| ||||||||||    
T  42537426 tctaatttttattttttttttaaaataaacctaaacaaaccaacattatcattaaaatgattgatacaacttgcttgtgataatgtgcagttgatttgct 42537327  T
Q  195 tgcaattcgtgaaaatggatttggtgaagattggaaagaaattgagaatttt 246  Q
    |||||||||| | ||||| ||||||| |||||||||||||||||||||||||    
T  42537326 tgcaattcgt-agaatggctttggtgcagattggaaagaaattgagaatttt 42537276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 42942185 - 42942403
Alignment:
Q  4 cataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactct 103  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| ||||||||    
T  42942185 cataggcaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactct 42942284  T
Q  104 aa-tttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattc 202  Q
    || ||||| |       | |||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||||||||  |||||||||||||||||     
T  42942285 aatttttttttaaaaaataaacctaaacaaactaacattatcattaaaatgattgatgcaacttacttgtgataatgtgcggttgatttgcttgcaatta 42942384  T
Q  203 gtgaaaatggatttggtga 221  Q
      | |||||||||||||||    
T  42942385 acggaaatggatttggtga 42942403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 8701920 - 8702131
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    ||||||| ||||| |||||||||| |||||||||  ||||||||||||||||||||||||||  |||||     || || |||||||||||||| |||||    
T  8701920 caacatatgcaactactacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattcatttataaaacctaaccacatgcaaactac 8702019  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    || ||||||| |       | ||||||||||||||||||||| ||||  ||||||| | |  |||||||||||||||||||    |||||  ||||||||    
T  8702020 tcaaattttt-ttaaaaacttaacctaaacaaattaacattaagattgcaatgattaatagtacttacttgtgataatgtggggatgattaacttgcaat 8702118  T
Q  201 tcgtgaaaatgga 213  Q
    |||||||||||||    
T  8702119 tcgtgaaaatgga 8702131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 40624623 - 40624720
Alignment:
Q  4 cataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactc 102  Q
    ||||||||||||||||||||| |||||||||  |||| |||||||||||||||||||||  ||||||| |||| |||||||| |||||||| |||||||    
T  40624623 cataggcaacaactacattcatttatcaattcataaaatacacatgcaatcatcaaattgtcaattttaaaattaaccctaa-cacatgcaaactactc 40624720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 20422315 - 20422210
Alignment:
Q  2 aacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactact 101  Q
    ||||||| ||||||||||||||| |||||||||  || ||||||||| |||||||||||||  |||||   | |||||||||||||||||||| ||||||    
T  20422315 aacatagacaacaactacattcatttatcaattcatacactacacatccaatcatcaaattgtcaattcctacatcaaccctaaccacatgcaaactact 20422216  T
Q  102 ctaatt 107  Q
    | ||||    
T  20422215 caaatt 20422210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 276 - 337
Target Start/End: Original strand, 19041088 - 19041149
Alignment:
Q  276 ttctacgttctggttatgttcagatttcctcgccagttagctaccgaggttttcctcggcag 337  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  19041088 ttctgcgttctggttatgttcagatttcctcggcagttaactaccgaggttttcttcggcag 19041149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 17658699 - 17658488
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||| ||||||||||||| ||||||||   ||||||||||||||||| || |||||  |||||     ||||| ||||||||||| || |||||    
T  17658699 caacataggccacaactacattcatttatcaataaataaactacacatgcaatgatgaaattgtcaattcatttatcaaacctaaccacatacaaactac 17658600  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    || ||||||| |       | |||||||||||||||||||||  |||  ||||||| |    |||||| ||||||||||||    |||||  ||||||||    
T  17658599 tcaaattttt-taaaaaacttaacctaaacaaattaacattaacattgcaatgattaatggtacttacctgtgataatgtggggatgattgtcttgcaat 17658501  T
Q  201 tcgtgaaaatgga 213  Q
    |||||||||||||    
T  17658500 tcgtgaaaatgga 17658488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 28238224 - 28238178
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||    
T  28238224 gttcagatttcctcggcagttaactaccgaggttttcctcggcagtt 28238178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 28880203 - 28880265
Alignment:
Q  185 ttgatttgcttgcaattcgtgaaaatggatttggtgaagattggaaagaaattgagaattttg 247  Q
    ||||||||| ||||||||||||||   ||||||| |||||||||| | |||||||||||||||    
T  28880203 ttgatttgcatgcaattcgtgaaataagatttggcgaagattggagaaaaattgagaattttg 28880265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 30708785 - 30708847
Alignment:
Q  185 ttgatttgcttgcaattcgtgaaaatggatttggtgaagattggaaagaaattgagaattttg 247  Q
    ||||||||| | ||||||||||||   ||||||| |||||||||| |||||||||||||||||    
T  30708785 ttgatttgcctccaattcgtgaaagaagatttggcgaagattggagagaaattgagaattttg 30708847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 27660018 - 27659979
Alignment:
Q  300 tttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  27660018 tttcctcggcagttaactaccgaggttttcctcggcagtt 27659979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 31787598 - 31787559
Alignment:
Q  300 tttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  31787598 tttcctcggcagttaactaccgaggttttcctcggcagtt 31787559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 8577055 - 8577013
Alignment:
Q  297 agatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||| |||||| |||||||||||||| |||||||||    
T  8577055 agatttcctcggcagttaactaccgaggttttcttcggcagtt 8577013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 13837801 - 13837763
Alignment:
Q  301 ttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  13837801 ttcctcggcagttaactaccgaggttttcctcggcagtt 13837763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 40624781 - 40624831
Alignment:
Q  163 acttacttgtgataatgtgcatttgatttgcttgcaattcgtgaaaatgga 213  Q
    |||||||||||||||||||    ||||| ||||||||||||||||||||||    
T  40624781 acttacttgtgataatgtggggatgattggcttgcaattcgtgaaaatgga 40624831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 11346083 - 11346046
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  11346083 tcctcgacagttaactaccgaggttttcctcggcagtt 11346046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 18307330 - 18307293
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  18307330 tcctcggcagttaactaccgaggttttcctcggcagtt 18307293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 19037467 - 19037504
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  19037467 tcctcggcagttaactaccgaggttttcctcggcagtt 19037504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 19037601 - 19037552
Alignment:
Q  290 tatgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||||| |||||| |||||||||||||| ||| |||||    
T  19037601 tatgttcagttttcctcggcagttaactaccgaggttttcttcgacagtt 19037552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 14280894 - 14280934
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| | |||| ||||||||||||||||||||||||    
T  14280894 atttcctcggccgttaactaccgaggttttcctcggcagtt 14280934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 28388509 - 28388553
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||| |||| ||| |||||| ||||||||||||||||||||||||    
T  28388509 tcagttttcttcggcagttaactaccgaggttttcctcggcagtt 28388553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 34122607 - 34122563
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||| |||||||| |||||| |||||||| |||||||||||||||    
T  34122607 tcagttttcctcggcagttaactaccgagcttttcctcggcagtt 34122563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 37814665 - 37814621
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| ||| |||||| ||||| ||||||||||||||||||    
T  37814665 tcagatttcttcggcagttaactaccaaggttttcctcggcagtt 37814621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 38855705 - 38855745
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||| | |||||| ||||||||||||||||||||||||    
T  38855705 atttccttggcagttaactaccgaggttttcctcggcagtt 38855745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 28469018 - 28468680
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| || |||||    
T  28469018 caacataggcaacaattacattcaattatcaatttctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 28468919  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28468918 tctaatttttttaaaaaaatcaacctaaacaaattaacattaacattcaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaat 28468819  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagat 300  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||| |  |||| ||| ||||||||    
T  28468818 tcgtgaaaatggatttggtgaagattggagagaaattgagaattttggaggttttttggaaatgggaggttctggttctgccatctgtttaagttcagat 28468719  T
Q  301 ttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  28468718 ttcctcggcagttaactaccgaggttttcctcggcagtt 28468680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 21998567 - 21998252
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||| |||||| || ||||||||||||||| |||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| || |||||    
T  21998567 caacatagacaacaaataaattcaattatcaattactaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 21998468  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  21998467 tctaatttttttaaaaaaatcaacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtacaattgatttgcttgcaat 21998368  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggtt--ttttggaaatgggagattctggttctacgttctggttatgttcag 298  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||  ||||||||||||||| |||||||||| ||||||||||||||||||    
T  21998367 tcgtgaaaatggatttggtgaagattggagagaaattgagaatttagaaggttttttttggaaatgggaggttctggttctgcgttctggttatgttcag 21998268  T
Q  299 atttcctcgccagtta 314  Q
     |||||||| ||||||    
T  21998267 ttttcctcggcagtta 21998252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 17420944 - 17420607
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  17420944 caacataggcaacaactacattcaatgatcaatttctaaactacacatgcaatcatcaaattctcaattttgaaatcaaccctaaccacatgcaaactac 17420845  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttg-caa 199  Q
    ||||||||||||       |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||   | |||  ||    
T  17420844 tctaatttttctaaaaaaatcaacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttga--aggttgagaa 17420747  T
Q  200 ttcgtgaaaatggatttggt-gaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcag 298  Q
    |||||| ||||||||||||| | | || ||| |||||||||||||||||||||||||||||||||||||| |||||||||| || |||| ||| ||||||    
T  17420746 ttcgtg-aaatggatttggtaggaaatgggagagaaattgagaattttgaaggttttttggaaatgggaggttctggttctgcgatctgtttaagttcag 17420648  T
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||| ||| ||||||||||    
T  17420647 atttcctcggcagttaactaccgaggattttctcggcagtt 17420607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 6 - 314
Target Start/End: Complemental strand, 45428963 - 45428654
Alignment:
Q  6 taggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactctaa 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||| ||||||||||||||||||| || ||||||||||    
T  45428963 taggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattgtcattttttaaatcaaccctaaccacatacaaactactctaa 45428864  T
Q  106 tttttctnnnnnnn-tcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgt 204  Q
    ||||| |        |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45428863 ttttttttttaaaaatcaacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgt 45428764  T
Q  205 gaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagatttcc 304  Q
    |||||||||||||| ||||||| || ||||||||  || ||||||    ||||||||||| ||  |||||||||| |||||||||||||| ||| ||||     
T  45428763 gaaaatggatttggagaagatttgagagaaattgttaaatttgaaaaggttttggaaatgagaagttctggttctgcgttctggttatgtccagttttct 45428664  T
Q  305 tcgccagtta 314  Q
    ||| ||||||    
T  45428663 tcggcagtta 45428654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 7185406 - 7185127
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||  ||||||| ||||||||||||||||||| || |||||    
T  7185406 caacataggcaacaactacattcatttatcaattcctaaacaacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 7185307  T
Q  101 tctaatttttctnnnnnnn-tcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaa 199  Q
    |||| ||||| |        ||||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||| ||| |||||||||||||||    
T  7185306 tctatttttttttttaaaaatcaacctaaacaaatcaacattaacattaaaattattgacacaacttacttgtgataatgcgcacttgatttgcttgcaa 7185207  T
Q  200 ttcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttct 279  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||  | ||||||||||||||  ||||||||||    
T  7185206 ttcgtgaaaatggatttggtgaagattggagagaaattgagaattttgaaattgttttggaaatgggaagttctggttct 7185127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 39947977 - 39947638
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||  ||||||| ||||||||||||||||||| || |||||    
T  39947977 caacataggcaacaactacattcatttatcaattcctaaactacacatgcaatcatcgaattgtcaattttaaaatcaaccctaaccacatacaaactac 39947878  T
Q  101 tctaatttttctnnnnnnn-tcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaa 199  Q
    |||||||||| |        |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  39947877 tctaatttttttaaaaaaaatcaacctaaacatattaacattatgattaaaatgattgacacaacttacttgtgataatgtgccgttgatttgcttgcaa 39947778  T
Q  200 ttcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcaga 299  Q
    |||||||||   |||||||||||||||||| | || ||  ||||||||     |||| | |||||||| | ||||||||| |||||| |||  |||||||    
T  39947777 ttcgtgaaagaagatttggtgaagattggagaaaatttatgaattttgtgaagttttggaaaatgggaaagtctggttctgcgttctagtttagttcaga 39947678  T
Q  300 tttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||  |||||| ||||||| ||||||||||||||||    
T  39947677 tttcctctgcagttaactaccgaagttttcctcggcagtt 39947638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 25965197 - 25964850
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    ||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  25965197 caacataggaaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 25965098  T
Q  101 tcta--------atttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttg 192  Q
    ||||        |||||| |       | |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  25965097 tctattttttttattttttttttaaaataaacctaaacaaactaacattatgattaaaatgattgatacaacttacttgtgataatgtgcagttgatttg 25964998  T
Q  193 cttgcaattcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatggga--gattctggttctacgttctggtt 290  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||  ||   ||||| |||||| |  | ||||| |||| || |||| ||    
T  25964997 cttgcaattcgtgaaaatggctttggtgaagattggagagaaattgagaattttttagaagttttgaaaatggtaatgtttctgtttctgcg-tctgatt 25964899  T
Q  291 atgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||||||| |||| |  ||| ||||||||||||||||||||||||    
T  25964898 atgttcagattttctcggctattaactaccgaggttttcctcggcagtt 25964850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 45137129 - 45137392
Alignment:
Q  2 aacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactact 101  Q
    ||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| ||||||||| |||||||||||| ||||||    
T  45137129 aacataggcaagaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccttaaccacatgcaaactact 45137228  T
Q  102 ctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaatt 201  Q
    ||||||||| |       | |||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  45137229 ctaatttttttttaaaaataaacctaaacaaactaacactatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaatt 45137328  T
Q  202 cgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgg 265  Q
     |||||||||| |||||||||||||||| |||||||| |||||||| ||   ||||||||||||    
T  45137329 tgtgaaaatggctttggtgaagattggagagaaattgtgaattttggagaaattttggaaatgg 45137392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 126 - 324
Target Start/End: Original strand, 42505582 - 42505781
Alignment:
Q  126 taaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgtgaaaatggatttggtgaagat 225  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42505582 taaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtgaagat 42505681  T
Q  226 tggaaagaaattgagaattttgaa-ggttttttggaaatgggagattctggttctacgttctggttatgttcagatttcctcgccagttagctaccgagg 324  Q
    |||| |||| |||| ||||||||| | ||||||| ||||||||| |||||||||| |||||||||||||| |||||||||||| |||||| |||||||||    
T  42505682 tggagagaatttgaaaattttgaatgtttttttgtaaatgggaggttctggttctgcgttctggttatgtccagatttcctcggcagttaactaccgagg 42505781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 32956050 - 32956265
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| |||||||||| |||||||| || |||||    
T  32956050 caacataggcaacaagtacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaacccaaaccacatacaaactac 32956149  T
Q  101 tctaa-tttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaa 199  Q
    ||||| ||||| |       |||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |    
T  32956150 tctaattttttttaaaaaaatcaacctaaacaaattaacattaacattaaaatgattggcacaacttacttgtgataatgtgcagttgatttgcttgcta 32956249  T
Q  200 ttcgtgaaaatggatt 215  Q
    || |||||||||||||    
T  32956250 tttgtgaaaatggatt 32956265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 43536187 - 43536141
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||    
T  43536187 gttcagatttcctcggcagttaactaccgaggttttcctcggcagtt 43536141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 18000311 - 18000271
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  18000311 atttcctcgccagttaactaccgaggttttcctcggcagtt 18000271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 30493444 - 30493398
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||||| |||||| |||||||| |||||||||||||||    
T  30493444 gttcagatttcctcggcagttaactaccgagattttcctcggcagtt 30493398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 5351726 - 5351766
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  5351726 atttcctcggcagttaactaccgaggttttcctcggcagtt 5351766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 5352066 - 5352018
Alignment:
Q  276 ttctacgttctggttatgttcagatttcctcgccagttagctaccgagg 324  Q
    |||| |||||||||||||||||| |||||||| |||||| |||||||||    
T  5352066 ttctgcgttctggttatgttcagttttcctcggcagttaactaccgagg 5352018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 7189941 - 7189985
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||| |||||| ||||||| ||||||||||||||||    
T  7189941 tcagatttcctcggcagttaactaccgaagttttcctcggcagtt 7189985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 22003396 - 22003435
Alignment:
Q  300 tttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  22003396 tttcctcggcagttaactaccgaggttttcctcggcagtt 22003435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 23347323 - 23347362
Alignment:
Q  300 tttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  23347323 tttcctcggcagttagctaccgaggttttcctcggtagtt 23347362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 25184825 - 25184864
Alignment:
Q  300 tttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  25184825 tttcctcggcagttaactaccgaggttttcctcggcagtt 25184864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 43982276 - 43982238
Alignment:
Q  301 ttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  43982276 ttcctcggcagttaactaccgaggttttcctcggcagtt 43982238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 44100786 - 44100832
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||| |||||||||  ||||| ||||||||||||||||||||||||    
T  44100786 gttcatatttcctcggtagttaactaccgaggttttcctcggcagtt 44100832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 15835163 - 15835208
Alignment:
Q  291 atgttcagatttcctcgccagttagctaccgaggttttcctcggca 336  Q
    |||||||| |||||||| |||||| ||||||||||||| |||||||    
T  15835163 atgttcagttttcctcggcagttaactaccgaggttttactcggca 15835208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 17424208 - 17424171
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  17424208 tcctcggcagttaactaccgaggttttcctcggcagtt 17424171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 3940700 - 3940748
Alignment:
Q  276 ttctacgttctggttatgttcagatttcctcgccagttagctaccgagg 324  Q
    |||| |||||||||||||||||| |||||||| |||||| || ||||||    
T  3940700 ttctgcgttctggttatgttcagttttcctcggcagttaactgccgagg 3940748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 3943186 - 3943226
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||||||| ||||||||||    
T  3943186 atttcctcggcagttaactaccgaggtttttctcggcagtt 3943226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 7267434 - 7267478
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||| |||||| |||||||| ||||||| |||||||    
T  7267434 tcagatttcctcggcagttaactaccgagattttccttggcagtt 7267478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 15831229 - 15831181
Alignment:
Q  276 ttctacgttctggttatgttcagatttcctcgccagttagctaccgagg 324  Q
    |||| |||||||||||||||||| |||||||| |||||| || ||||||    
T  15831229 ttctgcgttctggttatgttcagttttcctcggcagttaactgccgagg 15831181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 20938000 - 20937952
Alignment:
Q  276 ttctacgttctggttatgttcagatttcctcgccagttagctaccgagg 324  Q
    |||| |||||||||||||||||| |||||||| |||||| || ||||||    
T  20938000 ttctgcgttctggttatgttcagttttcctcggcagttaactgccgagg 20937952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 35464313 - 35464357
Alignment:
Q  14 aactacattcaattatcaatttctaaactacacatgcaatcatca 58  Q
    ||||||||||| |||| ||||  ||||||||||||||||||||||    
T  35464313 aactacattcatttataaattcataaactacacatgcaatcatca 35464357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 7795 - 7462
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||| || |||||    
T  7795 caacataggcaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttgaaatcaaccctaaccacatacaaactac 7696  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7695 tctaatttttttaaaaaaatcaacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaat 7596  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagat 300  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||| || ||||||||||||||| |||||||||| || | || ||| ||||||||    
T  7595 tcgtgaaaatggatttggtgaagattggagagaaattgagaatttagaaagtgttttggaaatgggaggttctggttctgcgatttgtttaagttcagat 7496  T
Q  301 ttcctcgccagttagctaccgaggttttcctcgg 334  Q
    ||||||| |||||| |||||||||||||||||||    
T  7495 ttcctcggcagttaactaccgaggttttcctcgg 7462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 44)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 45064618 - 45064340
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| || |||||    
T  45064618 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattgtcaattttgaaatcaaccctaaccacatacaaactac 45064519  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45064518 tctaatttttttaaaaaaatcaacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaat 45064419  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttct 279  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||  || ||||||||||    
T  45064418 tcgtgaaaatggatttggtgaagattggagagaaattgagaatttagaaggttttttggaaatgaaaggttctggttct 45064340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 15036424 - 15036737
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||  ||||||||||||||||||||||||||| || || ||    
T  15036424 caacataggcaacaactacattcatttatcaattcctgaactacacatgcaatcatcaaattgtcaattttgaaatcaaccctaaccacatacaaaccac 15036523  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       | |||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  15036524 tctaatttttttaaaaaaataaacctaaacaaattaacattaacattaaaatgattgacacaacttatttgtgataatgtgcacttgatttgcttgcaat 15036623  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagat 300  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| ||||||||| |||||||||| || |||| ||| ||||||||    
T  15036624 tcgcgaaaatggatttggtgaagattggagagaaattgagaatttagaaagttttttgaaaatgggaggttctggttctgcgatctgtttaagttcagat 15036723  T
Q  301 ttcctcgccagtta 314  Q
    ||||||| ||||||    
T  15036724 ttcctcggcagtta 15036737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 41249769 - 41250105
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| ||||| |||||||||||||||| |||||    
T  41249769 caacataggcaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatctaccctaaccacatgcaaactac 41249868  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    ||||||||||         |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41249869 tctaatttttaaaaaaaaatcaacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaat 41249968  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagat 300  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||    ||||||||||||||  |||||||||| |    || ||| || |||||    
T  41249969 tcgtgaaaatggatttggtgaagattggagagaaattgtgaattttgaacaagttttggaaatgggaagttctggttctgc-aaatgattaagtccagat 41250067  T
Q  301 ttcctcgccagttagctaccgaggttttcctcggcagt 338  Q
    ||||||| |||||| | | |||||||||||||||||||    
T  41250068 ttcctcggcagttaaccatcgaggttttcctcggcagt 41250105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 39938912 - 39939249
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||||  ||||||| |||||||||||||||||||| | |||||    
T  39938912 caacataggcaacaactacattcatttatcaattcctaaactatacatgtaatcatcaaattatcaattttaaaatcaaccctaaccacatgtaaactac 39939011  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  39939012 tctaattttttttaaaaaatcaacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatgtgcaattgatttgctttcaat 39939111  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagat 300  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||  | ||||||||||||||  |||||||||| ||   || ||| || |||||    
T  39939112 tcgtgaaaatggacttggtgaagattggagagaaattgagaattttgaaattgttttggaaatgggaagttctggttctgcg-aatgattaagtccagat 39939210  T
Q  301 ttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    || || | |||||| ||||| |||||||||| |||||||    
T  39939211 tttctaggcagttaactacctaggttttccttggcagtt 39939249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 3 - 324
Target Start/End: Original strand, 42485236 - 42485557
Alignment:
Q  3 acataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactc 102  Q
    |||||||||||| ||||||||| ||||||||   ||||||||||||||||| || |||||  |||||     || || |||||||||||||| |||||||    
T  42485236 acataggcaacatctacattcatttatcaatacataaactacacatgcaatgatgaaattgtcaattcatttataaaacctaaccacatgcaaactactc 42485335  T
Q  103 taatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattc 202  Q
     ||||||| |       | ||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42485336 -aatttttttaaaaaacttaacataaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattc 42485434  T
Q  203 gtgaaaatggatttggtgaagattggaaagaaattgagaattttgaa-ggttttttggaaatgggagattctggttctacgttctggttatgttcagatt 301  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||| | ||||||| ||||||||| |||||||||| |||||||||||||| ||||||    
T  42485435 gtgaaaatggatttggtgaagattggagagaatttgagaattttgaatgtttttttgtaaatgggaggttctggttctgcgttctggttatgtccagatt 42485534  T
Q  302 tcctcgccagttagctaccgagg 324  Q
    ||||||  ||||| |||||||||    
T  42485535 tcctcggtagttaactaccgagg 42485557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 43211882 - 43211570
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||  ||||||| ||||||||||||| ||||| || |||||    
T  43211882 caacataggcaacaactacattcatttatcaattcctaaactacacatgcaatcatcgaattgtcaattttaaaatcaaccctaagcacatacaaactac 43211783  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  43211782 tctaattttt-taaaaaaatcaaccaaaacaaattaacattatgattaaaatgattgacacaacttacttgtggtaatgtgcagttgatttgcttgcaat 43211684  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagat 300  Q
    ||||||||   |||||||||||||||||| | || ||| ||||||||     ||||   |||||||  | ||||||||||||||||||||  ||||||||    
T  43211683 tcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttgaaaaatggggaagtctggttctacgttctggtttagttcagat 43211584  T
Q  301 ttcctcgccagtta 314  Q
    ||||||| ||||||    
T  43211583 ttcctcggcagtta 43211570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 3 - 325
Target Start/End: Original strand, 489327 - 489649
Alignment:
Q  3 acataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactc 102  Q
    |||||||||||| ||||||||| ||||||||   ||||||||||||||||| || |||||  |||||      | || |||||||||||||| |||||||    
T  489327 acataggcaacatctacattcatttatcaatacataaactacacatgcaatgatgaaattgtcaattcatttgtaaaacctaaccacatgcaaactactc 489426  T
Q  103 taatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattc 202  Q
     ||||||| |       | ||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  489427 -aattttttttaaaaatttaacataaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattc 489525  T
Q  203 gtgaaaatggatttggtgaagattggaaagaaattgagaattttgaa-ggttttttggaaatgggagattctggttctacgttctggttatgttcagatt 301  Q
    ||||||||||||||||||||||| ||| |||| |||| ||||||||| | ||||||| ||||||||| |||||||||| |||||||||||||| ||||||    
T  489526 gtgaaaatggatttggtgaagatcggagagaatttgaaaattttgaatgtttttttgtaaatgggaggttctggttctgcgttctggttatgtccagatt 489625  T
Q  302 tcctcgccagttagctaccgaggt 325  Q
    |||||| |||||| ||||||||||    
T  489626 tcctcggcagttaactaccgaggt 489649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 39846682 - 39846931
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  39846682 caacataggcaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 39846781  T
Q  101 tctaatttttctnnnnnnn---tcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgc 197  Q
    |||| ||||| |          | |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| ||| |||||||||    
T  39846782 tctattttttttttataaaaaataaacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcaattggtttgcttgc 39846881  T
Q  198 aattcgtgaaaatggatttggtgaagattggaaagaaattgagaattttg 247  Q
    |||| |||||||||| |||||||||||||||| |||||||| ||||||||    
T  39846882 aatttgtgaaaatggctttggtgaagattggagagaaattgtgaattttg 39846931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 40076946 - 40077284
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||| ||||||||| |||||||||  ||||||||||||  ||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  40076946 caacataggcaacagctacattcatttatcaattcataaactacacatataatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 40077045  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       | |||||||||||| ||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  40077046 tctaattttttttaaaaaataaacctaaacaaactaacattatcattaaaatgattgatacaacttacttctgataatgtgcacttgatttgcttgcaat 40077145  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatggga-gattctggttctacgttctggttatgttcaga 299  Q
    |||||||||||| |||| |||||||||||||||| | ||||| |||| ||  || ||| || ||  | | || || |||| | ||||||||||||||||     
T  40077146 tcgtgaaaatggctttgttgaagattggaaagaattagagaagtttggagaattcttgaaactgaaatgtttgtgtttctgc-ttctggttatgttcagc 40077244  T
Q  300 tttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
       ||||| |||||| ||||||||||||||||||||||||    
T  40077245 acgcctcggcagttaactaccgaggttttcctcggcagtt 40077284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 43188426 - 43188181
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||| ||||||||||||||| |||| |||| |||||||||||||||||||||||||||  ||||||| ||||||||| |||||||||||| |||||    
T  43188426 caacatagacaacaactacattcatttattaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccataaccacatgcaaactac 43188327  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       | |||||||||||| ||||||||| |||||||||||||| ||||||||||||||| ||| |||| ||||||||||||||||    
T  43188326 tctaatttttttttaaaaataaacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgacaatatgcagttgatttgcttgcaat 43188227  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaatttt 246  Q
    || ||||||||  |||||||||||||||| ||||||||||||||||    
T  43188226 tcttgaaaatgactttggtgaagattggagagaaattgagaatttt 43188181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 34822713 - 34822961
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  34822713 caacataggcaacaactacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 34822812  T
Q  101 tctaa-tttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaact--tacttgtgataatgtgcatttgatttgcttgc 197  Q
    ||||| ||||| |       | |||||||||||| ||||||||| |||||||||||||| ||||||  |||||||||||||||||| || ||||||||||    
T  34822813 tctaatttttttttaaaaaataaacctaaacaaactaacattatcattaaaatgattgatacaacttatacttgtgataatgtgcagttaatttgcttgc 34822912  T
Q  198 aattcgtgaaaatggatttggtgaagattggaaagaaattgagaatttt 246  Q
    ||||||||||||  | |||||||||||||||| ||||||||||||||||    
T  34822913 aattcgtgaaaaaagttttggtgaagattggagagaaattgagaatttt 34822961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 25864636 - 25864880
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  25864636 caacataggcaacaactacattcatttatcaattcataa-ctacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 25864734  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||| ||| |       | |||||||||||| ||||||||| |||||||||||| | |||||||||||||||||||||| | |||||||| |||||||    
T  25864735 tctaatatttttttaaaaataaacctaaacaaactaacattatcattaaaatgattaatacaacttacttgtgataatgtgtagttgatttgattgcaat 25864834  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaatttt 246  Q
    |||||||||||  ||||||||||||| || ||||||||||||||||    
T  25864835 tcgtgaaaatgactttggtgaagattagagagaaattgagaatttt 25864880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 120 - 339
Target Start/End: Complemental strand, 39601961 - 39601743
Alignment:
Q  120 tcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgtgaaaatggatttggt 219  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||     
T  39601961 tcaacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaatgaatttggc 39601862  T
Q  220 gaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagatttcctcgccagttagctac 319  Q
    |||||||||| |||||||||||||||||||  | ||||||||||||||  |||||||||| ||   || ||| || |||||||||||| |||||| || |    
T  39601861 gaagattggagagaaattgagaattttgaaattgttttggaaatgggaagttctggttctgcg-aatgattaagtccagatttcctcggcagttaactcc 39601763  T
Q  320 cgaggttttcctcggcagtt 339  Q
    ||||||||||||||||||||    
T  39601762 cgaggttttcctcggcagtt 39601743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 39252388 - 39252149
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    ||||||| |||||||||||||||| |||| |||| |||||||||||||||||||||||||||  ||||||| ||||||||| ||||||||| || |||||    
T  39252388 caacatatgcaacaactacattcatttattaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaacc-taaccacatacaaactac 39252290  T
Q  101 tctaatttttctnnnnnnn---tcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgc 197  Q
    |||||||||| |          |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| | ||| |||||||||||||    
T  39252289 tctaattttttttttttaaaaatcaacctaaacaaattaacattaacattaaaatgattgacacaacttacttgtgataacgcgcacttgatttgcttgc 39252190  T
Q  198 aattcgtgaaaatggatttggtgaagattggaaagaaattg 238  Q
    |||||||||||||| ||||||||||||||||| ||||||||    
T  39252189 aattcgtgaaaatgaatttggtgaagattggagagaaattg 39252149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 120 - 333
Target Start/End: Complemental strand, 35026745 - 35026532
Alignment:
Q  120 tcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgtgaaaatggatttggt 219  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| |||||||    
T  35026745 tcaacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatgtgtagttaatttgcttgcaattcgtgaaaatgaatttggt 35026646  T
Q  220 gaagattggaaagaaattgagaattttgaaggttttttggaaat-gggagattctggttctacgttctggttatgttcagatttcctcgccagttagcta 318  Q
    |||||||| | |||||||  ||||||||||| | ||||| |||| |  || ||||||| || |  | || ||||||||||||||| ||| | |||| |||    
T  35026645 gaagattgtagagaaatttcgaattttgaagatgttttgaaaatagaaaggttctggtgctgc-atatgattatgttcagatttcatcggcggttaacta 35026547  T
Q  319 ccgaggttttcctcg 333  Q
    |||||||||| ||||    
T  35026546 ccgaggtttttctcg 35026532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 5304010 - 5304112
Alignment:
Q  145 attaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgtgaaaatggatttggtgaagattggaaagaaattgagaatt 244  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |    
T  5304010 attaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaatggctttggtgaagattggaaagaatttgagaagt 5304109  T
Q  245 ttg 247  Q
    |||    
T  5304110 ttg 5304112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 39602092 - 39601985
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| || |||||    
T  39602092 caacataggcaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 39601993  T
Q  101 tctaattt 108  Q
    ||||||||    
T  39601992 tctaattt 39601985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 5303917 - 5304011
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcat 95  Q
    |||||||| ||||||||||||||| |||||||||  |||||||||||||||||||| |||||  ||||||| |||||||||||||||||||||||    
T  5303917 caacatagacaacaactacattcatttatcaattcataaactacacatgcaatcatgaaattgtcaattttaaaatcaaccctaaccacatgcat 5304011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 24249851 - 24249759
Alignment:
Q  10 caacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactc 102  Q
    ||||||||||||||| |||||||||  ||||||||||||||||||||||||||  |||||   | |||||||||||||||||||| |||||||    
T  24249851 caacaactacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattcctatatcaaccctaaccacatgcaaactactc 24249759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 2984457 - 2984390
Alignment:
Q  43 acacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactctaattttt 110  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||||||||||||    
T  2984457 acacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactctaattttt 2984390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 37327164 - 37327080
Alignment:
Q  17 tacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactc 102  Q
    |||||||| |||||||||  ||||||||||||||||||||||||||  ||||||| |||| |||||||| |||||||| |||||||    
T  37327164 tacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaattaaccctaa-cacatgcaaactactc 37327080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 184520 - 184586
Alignment:
Q  273 tggttctacgttctggttatgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||  |||||||||||||| || |||||||| |||||| ||||||||||||||||||||||||    
T  184520 tggttctgggttctggttatgttgagttttcctcggcagttaactaccgaggttttcctcggcagtt 184586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 26663021 - 26663067
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||    
T  26663021 gttcagatttcctcggcagttaactaccgaggttttcctcggcagtt 26663067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 36677906 - 36677963
Alignment:
Q  282 gttctggttatgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||||||||| || | |||| | |||||| ||||||||||||||||||||||||    
T  36677906 gttctggttatgttgagttctccttggcagttaactaccgaggttttcctcggcagtt 36677963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 8419483 - 8419443
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  8419483 atttcctcggcagttaactaccgaggttttcctcggcagtt 8419443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 32375730 - 32375690
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  32375730 atttcctcggcagttaactaccgaggttttcctcggcagtt 32375690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 35026784 - 35026740
Alignment:
Q  37 taaactacacatgcaatcatcaaattcacaattttgaaatcaacc 81  Q
    ||||||||||||||||||||||||||  ||||||| |||||||||    
T  35026784 taaactacacatgcaatcatcaaattgtcaattttaaaatcaacc 35026740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 22495272 - 22495225
Alignment:
Q  13 caactacattcaattatcaatttctaaactacacatgcaatcatcaaa 60  Q
    |||||||||||| |||||||||  |||||||||||||||| |||||||    
T  22495272 caactacattcatttatcaattcgtaaactacacatgcaaccatcaaa 22495225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 22550860 - 22550899
Alignment:
Q  300 tttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  22550860 tttcctcggcagttaactaccgaggttttcctcggcagtt 22550899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 41016492 - 41016453
Alignment:
Q  300 tttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  41016492 tttcctcggcagttaactaccgaggttttcctcggcagtt 41016453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 45128005 - 45127946
Alignment:
Q  122 aacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtg 181  Q
    |||||||||||| |||||||| ||||||| ||||| |  | |||||||||||||||||||    
T  45128005 aacctaaacaaactaacattaagattaaattgattaatgctacttacttgtgataatgtg 45127946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 184422 - 184376
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||| |||||||||  ||||| ||||||||||||||||||||||||    
T  184422 gttcatatttcctcggtagttaactaccgaggttttcctcggcagtt 184376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 184497 - 184455
Alignment:
Q  297 agatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||| |||||| |||||||||||||| |||||||||    
T  184497 agatttcctcggcagttaactaccgaggttttcttcggcagtt 184455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 22014331 - 22014285
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||| |||||||||  ||||| ||||||||||||||||||||||||    
T  22014331 gttcatatttcctcggtagttaactaccgaggttttcctcggcagtt 22014285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 22014406 - 22014364
Alignment:
Q  297 agatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||| |||||| |||||||||||||| |||||||||    
T  22014406 agatttcctcggcagttaactaccgaggttttcttcggcagtt 22014364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 23018770 - 23018724
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||||| |||||| |||| ||||||||||| |||||||    
T  23018770 gttcagatttcctcggcagttaactactgaggttttccttggcagtt 23018724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 26451556 - 26451519
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  26451556 tcctcggcagttaactaccgaggttttcctcggcagtt 26451519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 42481648 - 42481603
Alignment:
Q  291 atgttcagatttcctcgccagttagctaccgaggttttcctcggca 336  Q
    |||||||| |||||||| |||||| ||||||||||||| |||||||    
T  42481648 atgttcagttttcctcggcagttaactaccgaggttttactcggca 42481603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 42602536 - 42602499
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  42602536 tcctcggcagttaactaccgaggttttcctcggcagtt 42602499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 7344551 - 7344591
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| || |||||||||||||||||||||    
T  7344551 atttcctcggcagttaactcccgaggttttcctcggcagtt 7344591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 17924277 - 17924317
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||||||| ||||||||||    
T  17924277 atttcctcggcagttaactaccgaggtttttctcggcagtt 17924317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 34366994 - 34366950
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| ||| |||||| ||||||||||||||||||| ||||    
T  34366994 tcagatttcatcggcagttaactaccgaggttttcctcggaagtt 34366950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 35962390 - 35962346
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||| |||||||| |||||| || |||||||||||||||||||||    
T  35962390 tcagttttcctcggcagttaactcccgaggttttcctcggcagtt 35962346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 43262500 - 43262460
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||| ||||||||||||||||    
T  43262500 atttcctcggcagttaactaccgaagttttcctcggcagtt 43262460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 34738743 - 34738406
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    ||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  34738743 caacataggtaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 34738644  T
Q  101 tctaatttttctnnnnnnn--tcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgca 198  Q
    |||||||||| |         |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  34738643 tctaatttttttttttaaaaatcaacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatgtgcagatgatttgcttgca 34738544  T
Q  199 attcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgg-gagattctggttctacgttctggttatgttca 297  Q
    |||||||||||| |||||||||||||||||| |||||||| ||||||||||| | ||||||||||||  || |||||||||| || | || |||||||||    
T  34738543 attcgtgaaaatagatttggtgaagattggagagaaattgtgaattttgaagatgttttggaaatggaaaggttctggttctgcg-tatgattatgttca 34738445  T
Q  298 gatttcctcgccagttagctaccgaggttttcctcggca 336  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  34738444 gatttcctcggcagttaactaccgaggttttcctcggca 34738406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 3 - 339
Target Start/End: Original strand, 15073926 - 15074262
Alignment:
Q  3 acataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactc 102  Q
    |||||||||||||||||||||| ||||||||   ||||||||||||||||| || |||||  |||||     || || |||||||||||||| |||||||    
T  15073926 acataggcaacaactacattcatttatcaatacataaactacacatgcaatgatgaaattgtcaattcatttataaaacctaaccacatgcaaactactc 15074025  T
Q  103 taatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattc 202  Q
     ||||||| |       | ||| |||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  15074026 -aatttttttaaaaaacttaacataaacaaattaatattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttacaattc 15074124  T
Q  203 gtgaaaatggatttggtgaagattggaaagaaattgagaattttgaa-ggttttttggaaatgggagattctggttctacgttctggttatgttcagatt 301  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||||||| |||||||||| |||||||||||||| ||||||    
T  15074125 gtgaaaatggatttggtgaagattggagagaaattgagaattttgaatgtttttttgtaaatgggaggttctggttctgcgttctggttatgtccagatt 15074224  T
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  15074225 tcctcgacagttaactaccgaggttttcctcggcagtt 15074262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 17835453 - 17835188
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| ||||||||| ||||||||| || |||||    
T  17835453 caacataggcaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccttaaccacatacaaactac 17835354  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       ||||| |||||||||||||||||  |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  17835353 tctaatttttttaaaaaaatcaacataaacaaattaacattaacattaaaatgattga-acaacttacttgtgataatgtgcacttgatttgcttgcaat 17835255  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatggga 267  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||  | ||||||||||||||    
T  17835254 tcgtgaaaatggatttggtgaagattggagagaaattgagaattttgaaattgttttggaaatggga 17835188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 27453315 - 27453579
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    ||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||| |||||    
T  27453315 caacataggtaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttgaaatcaactctaaccacatgcaaactac 27453414  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       | |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  27453415 tctaattttttttttaaaataaacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcaattgatttgcttgcaat 27453514  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgg 265  Q
    | |||||||||| |||||||||||||||| |||||||| |||||||||||   ||||||||||||    
T  27453515 ttgtgaaaatggctttggtgaagattggagagaaattgtgaattttgaagaagttttggaaatgg 27453579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 47776711 - 47776371
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  47776711 caacataggcaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 47776612  T
Q  101 tctaat-ttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaa 199  Q
    |||||| |||| |       | |||||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||| |||||||||||||||    
T  47776611 tctaatttttttttaaaaaataaacctaaacaaactaacattatcattaaaatgattgatacaccttacttgtgataatgtgcagttgatttgcttgcaa 47776512  T
Q  200 ttcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatggga--gattctggttctacgttctggttatgttca 297  Q
    || |||||||||  |||||||||||||||| |||||| | |||||||| ||   |||||||||||| |  | ||||| |||| || | || ||| |||||    
T  47776511 tttgtgaaaatgactttggtgaagattggagagaaatggtgaattttggagaagttttggaaatggtaatgtttctgtttctgcg-tatgattaagttca 47776413  T
Q  298 gatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||||| ||||||  |||||||||||||||||||||||    
T  47776412 gatttcctcggcagttaattaccgaggttttcctcggcagtt 47776371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 10517357 - 10517130
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| || |||||    
T  10517357 caacataggcaacaactacattcatttatcaattcctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 10517258  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  10517257 tctaattttt-ttaaaaaatcaacctaaacaaattaacattatgattaaaatgattgacacagcttacttgtgataatgtgcagttgatttgcttgcaat 10517159  T
Q  201 tcgtgaaaatggatttggtgaagattgga 229  Q
    ||||||||   ||||||||||||||||||    
T  10517158 tcgtgaaagaagatttggtgaagattgga 10517130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 5 - 246
Target Start/End: Complemental strand, 39460901 - 39460660
Alignment:
Q  5 ataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactcta 104  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||||||    
T  39460901 ataggcaacaactacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactactcta 39460802  T
Q  105 atttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgt 204  Q
    |||||| |       | |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  39460801 attttttttaaaaaataaacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgt 39460702  T
Q  205 gaaaatggatttggtgaagattggaaagaaattgagaatttt 246  Q
    |||||||  ||||||||| ||| || ||||||||||||||||    
T  39460701 gaaaatgactttggtgaacattagagagaaattgagaatttt 39460660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 3 - 339
Target Start/End: Original strand, 42507725 - 42508061
Alignment:
Q  3 acataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactc 102  Q
    |||||||||||||||||||||| ||||||||   ||||||||||||||||| || |||||   ||||     || || |||||||||||||| |||| ||    
T  42507725 acataggcaacaactacattcatttatcaatacataaactacacatgcaatgatgaaattgttaattcatttataaaacctaaccacatgcaaactagtc 42507824  T
Q  103 taatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattc 202  Q
     ||||||| |       | ||| |||||||||||||||||  ||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  42507825 -aatttttttaaaaaacttaacataaacaaattaacattaacattaaaatgtttgacacaagttacttgtgataatgtgcacttgatttgcttgcaattc 42507923  T
Q  203 gtgaaaatggatttggtgaagattggaaagaaattgagaattttgaa-ggttttttggaaatgggagattctggttctacgttctggttatgttcagatt 301  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||| ||| |||||||||| |||||||||||||| ||||||    
T  42507924 gtgaaaatggatttggtgaagattggagagaaattgagaattttgaatgtttttttgtaaatgagaggttctggttctgcgttctggttatgtccagatt 42508023  T
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| |||| ||| |||||||| ||||||    
T  42508024 tcctcggcagttaactactgagattttcctcagcagtt 42508061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 36977975 - 36977733
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  36977975 caacataggcaacaactacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 36977876  T
Q  101 tctaatttttctnnnnnnn--tcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgca 198  Q
    ||  |||||| |         | |||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| || ||||||||||||||    
T  36977875 tcagattttttttaaaaaaaataaacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtacagttgatttgcttgca 36977776  T
Q  199 attcgtgaaaatggatttggtgaagattggaaagaaattgaga 241  Q
    |||||||||||||| ||||||||||||||||||||| ||||||    
T  36977775 attcgtgaaaatggctttggtgaagattggaaagaatttgaga 36977733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 37340681 - 37340435
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    ||||||||||||||| |||||||| || ||||||  ||||||||||||| ||||||||||||  ||||||| ||||||| ||||||||||| || |||||    
T  37340681 caacataggcaacaagtacattcatttttcaattcataaactacacatgaaatcatcaaattgtcaattttaaaatcaatcctaaccacatccaaactac 37340582  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    | |||||||| |       | |||||||||||| |||||||||  ||||||||||||| |||||||||||||||||||||||  ||||||||||||||||    
T  37340581 tataatttttttaaaaaaataaacctaaacaaactaacattattgttaaaatgattgatacaacttacttgtgataatgtgctgttgatttgcttgcaat 37340482  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttg 247  Q
    |||||||||||| ||||||||||||||||||||| ||||||| ||||    
T  37340481 tcgtgaaaatggctttggtgaagattggaaagaatttgagaagtttg 37340435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 47672781 - 47673004
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  || | || ||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  47672781 caacataggcaacaactacattcatttatcaattcatagattatacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 47672880  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    | |||||||| |       | |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  47672881 tataatttttttttaaaaataaacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaat 47672980  T
Q  201 tcgtgaaaatggatttggtgaaga 224  Q
    |||||||||| | |||| ||||||    
T  47672981 tcgtgaaaatagctttgatgaaga 47673004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 9494491 - 9494840
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  |||| ||||||||||| |||||||||  ||||||| |||||||||| ||||||||||| |||||    
T  9494491 caacataggcaacaactacattcatttatcaattcataaattacacatgcaaccatcaaattttcaattttaaaatcaacccaaaccacatgcaaactac 9494590  T
Q  101 tctaatttttctnnnnnnntc-----------aacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgat 189  Q
    |||||||||| |       |            |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||    
T  9494591 tctaatttttttattttatttttttaaaaataaacctaaacaaactaacattatcattaaaatgattgatacaacttacttgtgataatgtgcagttgat 9494690  T
Q  190 ttgcttgcaattcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatggga-gattctggttctacgttctgg 288  Q
    ||||||| ||||||||||||||| |||||||||||||| |||||| ||||||| |||| ||   ||||| || ||  | | ||||| |||||| |||||     
T  9494691 ttgcttggaattcgtgaaaatggctttggtgaagattgaaaagaatttgagaagtttggagaagttttgaaactgatatgtttctgtttctac-ttctgt 9494789  T
Q  289 ttatgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||    ||||| |||||| || |||||||||||||||||||||    
T  9494790 ttatgttcagtacgcctcgacagttaactcccgaggttttcctcggcagtt 9494840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 10098085 - 10098151
Alignment:
Q  273 tggttctacgttctggttatgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||  |||||||||||||| || |||||||| |||||| || |||||||||||||||||||||    
T  10098085 tggttctgggttctggttatgttgagttttcctcgtcagttaactcccgaggttttcctcggcagtt 10098151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 35606874 - 35606828
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||    
T  35606874 gttcagatttcctcggcagttaactaccgaggttttcctcggcagtt 35606828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 17741163 - 17741255
Alignment:
Q  10 caacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactc 102  Q
    ||||||||||||||| |||||||||  |||||||||||||||||| ||||| |  |||||     || ||||||||||||||||| |||||||    
T  17741163 caacaactacattcatttatcaattcataaactacacatgcaatcttcaaaatgtcaattcattcataaaccctaaccacatgcaaactactc 17741255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 14689754 - 14689965
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||| ||||||||||||||| ||||||||   ||||||||||||||||| || |||||  |||||     ||||| | ||||||||| || |||||    
T  14689754 caacatagacaacaactacattcatttatcaataaataaactacacatgcaatgatgaaattgtcaattcatttatcaaacttaaccacatacaaactac 14689853  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |  ||||||| |       | |||||||||||||||||||||  |||  ||||||| |    |||||||||||||||||||    ||| |  ||||||||    
T  14689854 t-aaattttttttaaaaacttaacctaaacaaattaacattaccattgcaatgattaatggtacttacttgtgataatgtgaggatgaatgtcttgcaat 14689952  T
Q  201 tcgtgaaaatgga 213  Q
    |||||||||||||    
T  14689953 tcgtgaaaatgga 14689965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 17741274 - 17741373
Alignment:
Q  122 aacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgtgaaaatggatttggtga 221  Q
    |||||||||||| |||||||| ||||| ||||| | |  | |||||||| ||||||||||    ||||| ||||| ||||||||||||||| ||||||||    
T  17741274 aacctaaacaaactaacattaagattacaatgactaatgctacttacttttgataatgtggggatgattggcttgtaattcgtgaaaatggctttggtga 17741373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 15070668 - 15070606
Alignment:
Q  185 ttgatttgcttgcaattcgtgaaaatggatttggtgaagattggaaagaaattgagaattttg 247  Q
    |||||||||| |||||||||||||   ||||||| ||||||| || |||||||||||||||||    
T  15070668 ttgatttgctcgcaattcgtgaaagaagatttggcgaagatttgagagaaattgagaattttg 15070606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 41884114 - 41884160
Alignment:
Q  293 gttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||||| |||||| || |||||||||||||||||||||    
T  41884114 gttcagatttcctcggcagttaacttccgaggttttcctcggcagtt 41884160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 45767855 - 45767895
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  45767855 atttcctcggcagttaactaccgaggttttcctcggcagtt 45767895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 15070433 - 15070394
Alignment:
Q  300 tttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  15070433 tttcctcggcagttaactaccgaggttttcctcggcagtt 15070394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 17834569 - 17834526
Alignment:
Q  296 cagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||||||| |||||| ||||||| ||||||||||||||||    
T  17834569 cagatttcctcggcagttaactaccgaagttttcctcggcagtt 17834526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 17840885 - 17840924
Alignment:
Q  300 tttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  17840885 tttcctcggcagttaactaccgaggttttcctcggcagtt 17840924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 18105451 - 18105412
Alignment:
Q  300 tttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  18105451 tttcctcggcagttaactaccgaggttttcctcggcagtt 18105412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 7975605 - 7975643
Alignment:
Q  301 ttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  7975605 ttcctcgacagttacctaccgaggttttcctcggcagtt 7975643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 9367720 - 9367758
Alignment:
Q  301 ttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  9367720 ttcctcggcagttaactaccgaggttttcctcggcagtt 9367758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 30355236 - 30355273
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  30355236 tcctcggcagttaactaccgaggttttcctcggcagtt 30355273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 42499485 - 42499448
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  42499485 tcctcggcagttaactaccgaggttttcctcggcagtt 42499448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 48407273 - 48407318
Alignment:
Q  291 atgttcagatttcctcgccagttagctaccgaggttttcctcggca 336  Q
    |||||||| |||||||| |||||| ||||||||||||| |||||||    
T  48407273 atgttcagttttcctcggcagttaactaccgaggttttactcggca 48407318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 9491457 - 9491497
Alignment:
Q  298 gatttcctcgccagttagctaccgaggttttcctcggcagt 338  Q
    |||||||||| |||||| ||||||||| |||||||||||||    
T  9491457 gatttcctcgacagttaactaccgaggatttcctcggcagt 9491497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 17465684 - 17465732
Alignment:
Q  276 ttctacgttctggttatgttcagatttcctcgccagttagctaccgagg 324  Q
    |||| |||||||||||||||||| |||||||| |||||| || ||||||    
T  17465684 ttctgcgttctggttatgttcagttttcctcggcagttaactgccgagg 17465732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 17587530 - 17587482
Alignment:
Q  276 ttctacgttctggttatgttcagatttcctcgccagttagctaccgagg 324  Q
    |||| |||||||||||||||||| |||||||| |||||| || ||||||    
T  17587530 ttctgcgttctggttatgttcagttttcctcggcagttaactgccgagg 17587482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 30791002 - 30791042
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||||||||||||| ||||    
T  30791002 atttcctcggcagttaactaccgaggttttcctcggtagtt 30791042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 3 - 339
Target Start/End: Original strand, 426 - 756
Alignment:
Q  3 acataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| || |||||||    
T  426 acataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattgtcaattttgaaatcaaccctaaccacatacaaactactc 525  T
Q  103 taatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattc 202  Q
    ||||||||         |||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  526 taattttttaaaaaaaatcaacctaaacaaattaacatta------aaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattc 619  T
Q  203 gtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagattt 302  Q
    |||||||||||||||| ||||||| || ||||||||  || ||||||    ||||||||||| ||  |||||||||| |||| ||||||||| ||| |||    
T  620 gtgaaaatggatttggagaagatttgagagaaattgttaaatttgaaaaagttttggaaatgagaagttctggttctgcgttatggttatgtccagtttt 719  T
Q  303 cctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||| |||||| |||||||||||||||| |||||||    
T  720 cctcggcagttaactaccgaggttttcctgggcagtt 756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 15319 - 15656
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| || |||||    
T  15319 caacataggcaataactacattcatttatcaatttctaaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatacaaactac 15418  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  15419 tctaattttt-ttaaaaaatcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttatgataatgtgcagttgatttgcttgcaat 15517  T
Q  201 tcgtgaaaatggatttggtgaagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagat 300  Q
    ||||||||   |||||||||||||||||| | || ||| ||||||||     |||| | |||||||  | |||| ||||  |||||||||  ||||| ||    
T  15518 tcgtgaaagaagatttggtgaagattggagaaaatttgtgaattttgtgaagttttggaaaatggggaagtctgcttctgtgttctggtttagttcatat 15617  T
Q  301 ttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    || |||| |||||| ||||| ||||||||||||||||||    
T  15618 tttctcggcagttaactaccaaggttttcctcggcagtt 15656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 40746 - 41056
Alignment:
Q  16 ctacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactactctaatttttctnnn 115  Q
    ||||||||| ||||||||   ||||||||||||||||| || |||||  |||||     || || |||||||||||||| ||||||| ||||||| |       
T  40746 ctacattcatttatcaatacataaactacacatgcaatgatgaaattgtcaattcatttataaaacctaaccacatgcaaactactc-aatttttttaaa 40844  T
Q  116 nnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgtgaaaatggatt 215  Q
        | ||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40845 aaacttaacataaacaaattaacattaacattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatt 40944  T
Q  216 tggtgaagattggaaagaaattgagaattttgaa-ggttttttggaaatgggagattctggttctacgttctggttatgttcagatttcctcgccagtta 314  Q
    |||||||||||||| ||||||||||||||||||| | ||||||| |||||||||             ||||||||||||| |||||||||||| ||||||    
T  40945 tggtgaagattggagagaaattgagaattttgaatgtttttttgtaaatgggag-------------gttctggttatgtccagatttcctcggcagtta 41031  T
Q  315 gctaccgaggttttcctcggcagtt 339  Q
     || |||||||||||||||||||||    
T  41032 actcccgaggttttcctcggcagtt 41056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 36738 - 36676
Alignment:
Q  185 ttgatttgcttgcaattcgtgaaaatggatttggtgaagattggaaagaaattgagaattttg 247  Q
    |||||||||| |||||||||||||   ||||||| | ||||| || |||||||||||||||||    
T  36738 ttgatttgctcgcaattcgtgaaagaagatttggcggagatttgagagaaattgagaattttg 36676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 36531 - 36568
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  36531 tcctcggcagttaactaccgaggttttcctcggcagtt 36568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 121 - 338
Target Start/End: Original strand, 18111 - 18326
Alignment:
Q  121 caacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgtgaaaatggatttggtg 220  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18111 caacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtg 18210  T
Q  221 aagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagatttcctcgccagttagctacc 320  Q
    ||||||||| |||||||| ||||||||||    ||||||||||||||  |||||||||| ||   || ||| || ||||||| |||| |||||| |||||    
T  18211 aagattggagagaaattgtgaattttgaa-aaattttggaaatgggaagttctggttctgcg-aatgattaagtccagattttctcggcagttaactacc 18308  T
Q  321 gaggttttcctcggcagt 338  Q
    ||||||||| ||| ||||    
T  18309 gaggttttcttcgacagt 18326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 121 - 338
Target Start/End: Complemental strand, 54733 - 54518
Alignment:
Q  121 caacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgtgaaaatggatttggtg 220  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  54733 caacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatgtgcacttgatttgcttgcaattcgtgaaaatggatttggtg 54634  T
Q  221 aagattggaaagaaattgagaattttgaaggttttttggaaatgggagattctggttctacgttctggttatgttcagatttcctcgccagttagctacc 320  Q
    ||||||||| |||||||| ||||||||||    ||||||||||||||  |||||||||| ||   || ||| || ||||||| |||| |||||| |||||    
T  54633 aagattggagagaaattgtgaattttgaa-aaattttggaaatgggaagttctggttctgcg-aatgattaagtccagattttctcggcagttaactacc 54536  T
Q  321 gaggttttcctcggcagt 338  Q
    ||||||||| ||| ||||    
T  54535 gaggttttcttcgacagt 54518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8580 - 8361
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  ||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  8580 caacataggcaacaactacattcatttatcaattcataaactatacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 8481  T
Q  101 tctaatttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaat 200  Q
    |||||||||| |       | |||||||||||| ||||||||| |||||||| |||||  |||||||||||||||||||||   ||||||||||||||||    
T  8480 tctaattttt-ttaaaaattaaacctaaacaaactaacattatcattaaaataattgatgcaacttacttgtgataatgtgtggttgatttgcttgcaat 8382  T
Q  201 tcgtgaaaatggatttggtga 221  Q
    ||| ||||| || ||||||||    
T  8381 tcgcgaaaacggctttggtga 8361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 24088478 - 24088722
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||| ||||||||||||||| |||||||||  ||||||||||||||||| ||||||||  ||||||| |||||||| ||||||||||||| |||||    
T  24088478 caacatagacaacaactacattcatttatcaattcataaactacacatgcaattatcaaattgtcaattttaaaatcaacactaaccacatgcaaactac 24088577  T
Q  101 tcta--atttttctnnnnnnntcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgca 198  Q
    ||||   ||||| |       | |||||||||||| ||||||||| |||||||||||||| |||||||| |||||||||| |||  ||||||||||||||    
T  24088578 tctattttttttttttaaaaataaacctaaacaaactaacattatcattaaaatgattgatacaacttatttgtgataatttgcggttgatttgcttgca 24088677  T
Q  199 attcgtgaaaatggatttggtgaagattggaaagaaattgagaat 243  Q
    ||||||||||||   |||  |||| |||||| |||||||||||||    
T  24088678 attcgtgaaaataactttaatgaaaattggagagaaattgagaat 24088722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 31769082 - 31768861
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaa----tcatcaaattcacaattttgaaatcaaccctaaccacatgcata 96  Q
    ||||||| |||||||||||||||| || |||||| |||||| ||||||||||    ||||||||||  | ||||| |||||||||||||||||||||| |    
T  31769082 caacataagcaacaactacattcatttgtcaattcctaaaccacacatgcaagcaatcatcaaattgtcgattttaaaatcaaccctaaccacatgcaaa 31768983  T
Q  97 ctactctaatttttctnnnnnnn-tcaacctaaacaaattaacattatgattaaaatgattgacacaacttacttgtgataatgtgcatttgatttgctt 195  Q
    ||||||||||||||          |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |  ||||||||    
T  31768982 ctactctaatttttaaaaaaaaaatcaacctaaacaaattaacattatcattaaaatgattgacacaacttacttgtgataatgtgcaatctatttgctt 31768883  T
Q  196 gcaattcgtgaaaatggatttg 217  Q
    ||||||  ||||||||||||||    
T  31768882 gcaatttatgaaaatggatttg 31768861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 6320259 - 6320368
Alignment:
Q  1 caacataggcaacaactacattcaattatcaatttctaaactacacatgcaatcatcaaattcacaattttgaaatcaaccctaaccacatgcatactac 100  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||||    
T  6320259 caacataggcaacaactacattcatttatcaattcataaactacacatgcaatcatcaaattgtcaattttaaaatcaaccctaaccacatgcaaactac 6320358  T
Q  101 tctaattttt 110  Q
    ||||||||||    
T  6320359 tctaattttt 6320368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 6320371 - 6320470
Alignment:
Q  148 aaaatgattgacacaacttacttgtgataatgtgcatttgatttgcttgcaattcgtgaaaatggatttggtgaagattggaaagaaattgagaattttg 247  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||    
T  6320371 aaaatgattgatacaacttacttgtgataatgtgcagttgatttgcttgcaattcgtgaaaatggctttggtgaagattggaaagaatttgagaagtttg 6320470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 27616817 - 27616754
Alignment:
Q  276 ttctacgttctggttatgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||    
T  27616817 ttctgcgttctggttatgttcagatttcctcggcagttaactaccgaggttttcttcggcagtt 27616754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 26712144 - 26712087
Alignment:
Q  282 gttctggttatgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||||||||| || |||||||| |||||| ||||||||||||||||||||||||    
T  26712144 gttctggttatgttgagttttcctcggcagttaactaccgaggttttcctcggcagtt 26712087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 31768842 - 31768795
Alignment:
Q  289 ttatgttcagatttcctcgccagttagctaccgaggttttcctcggca 336  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||    
T  31768842 ttatgttcagatttcctcggcagttaactaccgaggttttcctcggca 31768795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 30424143 - 30424189
Alignment:
Q  14 aactacattcaattatcaatttctaaactacacatgcaatcatcaaa 60  Q
    ||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  30424143 aactacattcatttatcaattcctaaactatacatgcaatcatcaaa 30424189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 11840240 - 11840284
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||| |||||| |||||||||||||||||| |||||    
T  11840240 tcagatttcctcggcagttaactaccgaggttttcctcgacagtt 11840284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 13382712 - 13382668
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||| |||||||| |||||| ||||||||||||||||||||||||    
T  13382712 tcagttttcctcggcagttaactaccgaggttttcctcggcagtt 13382668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 18351633 - 18351677
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| ||| |||||| ||||||||||||||||||||||||    
T  18351633 tcagatttcttcggcagttaactaccgaggttttcctcggcagtt 18351677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 28249963 - 28249924
Alignment:
Q  300 tttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  28249963 tttcctcggcagttaactaccgaggttttcctcggcagtt 28249924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 21600809 - 21600751
Alignment:
Q  163 acttacttgtgataatgtgcatttgatttgcttgcaattcgtgaaaatggatttggtga 221  Q
    |||||||||||||||||||    ||||| | |||||| |||||||||||||||||||||    
T  21600809 acttacttgtgataatgtggcgatgattggtttgcaaatcgtgaaaatggatttggtga 21600751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 6204903 - 6204866
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  6204903 tcctcggcagttaactaccgaggttttcctcggcagtt 6204866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 11691870 - 11691833
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  11691870 tcctcggcagttaactaccgaggttttcctcggcagtt 11691833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 22305184 - 22305147
Alignment:
Q  302 tcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  22305184 tcctcggcagttaactaccgaggttttcctcggcagtt 22305147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 27639526 - 27639574
Alignment:
Q  291 atgttcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| |||||||| |||||| |||||||||||||| ||| |||||    
T  27639526 atgttcagttttcctcggcagttaactaccgaggttttcttcgacagtt 27639574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 29076317 - 29076357
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||||||||||| ||||||    
T  29076317 atttcctcggcagttaactaccgaggttttcctcagcagtt 29076357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 29109850 - 29109890
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||||||||||| ||||||    
T  29109850 atttcctcggcagttaactaccgaggttttcctcagcagtt 29109890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 29111290 - 29111330
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||||||||||| ||||||    
T  29111290 atttcctcggcagttaactaccgaggttttcctcagcagtt 29111330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 30424247 - 30424299
Alignment:
Q  122 aacctaaacaaattaacattatgatta-aaatgattgacacaacttacttgtg 173  Q
    |||||| ||||| |||||||||||||| |||||||| |||| |||||||||||    
T  30424247 aacctacacaaactaacattatgattacaaatgattaacactacttacttgtg 30424299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 30829622 - 30829670
Alignment:
Q  276 ttctacgttctggttatgttcagatttcctcgccagttagctaccgagg 324  Q
    |||| |||||||||||||||||| |||||||| |||||| || ||||||    
T  30829622 ttctgcgttctggttatgttcagttttcctcggcagttaactgccgagg 30829670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 417 - 457
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  417 atttcctcggcagttaactaccgaggttttcctcggcagtt 457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 936 - 896
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  936 atttcctcggcagttaactaccgaggttttcctcggcagtt 896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 909 - 870
Alignment:
Q  300 tttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  909 tttcctcggcagttaactaccgaggttttcctcggcagtt 870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 5409 - 5370
Alignment:
Q  300 tttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  5409 tttcctcggcagttaactaccgaggttttcctcggcagtt 5370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 11424 - 11472
Alignment:
Q  276 ttctacgttctggttatgttcagatttcctcgccagttagctaccgagg 324  Q
    |||| |||||||||||||||||| |||||||| |||||| || ||||||    
T  11424 ttctgcgttctggttatgttcagttttcctcgacagttaactgccgagg 11472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 50125 - 50086
Alignment:
Q  300 tttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  50125 tttcctcggcagttaactaccgaggttttcctcggcagtt 50086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Original strand, 232827 - 232866
Alignment:
Q  300 tttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  232827 tttcctcggcagttaactaccgaggttttcctcggcagtt 232866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 251183 - 251230
Alignment:
Q  13 caactacattcaattatcaatttctaaactacacatgcaatcatcaaa 60  Q
    |||||||||||| |||||||||  ||||||||||||||||| ||||||    
T  251183 caactacattcatttatcaattcataaactacacatgcaattatcaaa 251230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 17345 - 17385
Alignment:
Q  299 atttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||| |||||| ||||||||| ||||||||||||||    
T  17345 atttcctcggcagttaactaccgaggatttcctcggcagtt 17385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 15945 - 15989
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    |||| ||||||||  ||||| ||||||||||||||||||||||||    
T  15945 tcagttttcctcggaagttaactaccgaggttttcctcggcagtt 15989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 236224 - 236268
Alignment:
Q  295 tcagatttcctcgccagttagctaccgaggttttcctcggcagtt 339  Q
    ||||||||||||| |||||| ||||||| ||||||||| ||||||    
T  236224 tcagatttcctcggcagttaactaccgaagttttcctctgcagtt 236268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University