View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18989_high_5 (Length: 445)
Name: NF18989_high_5
Description: NF18989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18989_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Complemental strand, 43345052 - 43344631
Alignment:
| Q |
17 |
caactattacggttattcaaatcccccaccttcttcttccttctatggatcttcaccacctcctatacctccttcttcaaagccacctccagctccacct |
116 |
Q |
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| T |
43345052 |
caactattacggttattcaaatcccccaccttcttcttccttctatggatcttccccacctcctatacctccttcttcaaagccacctcctgctccacct |
43344953 |
T |
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| Q |
117 |
tctcctccaaaaacttctacttgggattttctcaatttcttcgaaaaccatgacaaatactatccacagactactcaatacacacccactgctacaccta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43344952 |
tctcctccaaaaacttctacttgggattttctcaatttcttcgaaaaccatgacaaatactatccacagactactcaatacacacccactgctacaccta |
43344853 |
T |
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| Q |
217 |
gccgagattcaaatgttgtcagggaggaagaagggattcctgatttggaagatgaggatgaagttgttaaacaggttcatggagatcaaaagcttgttcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43344852 |
gccgagattcaaatgttgtcagggaggaagaagggattcctgatttggaagatgaggatgaagttgttaaacaggttcatggagatcaaaagcttgttcc |
43344753 |
T |
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| Q |
317 |
tccacctaattctaatcattccaatgatcatcatgatcatggtcatcttgaagatgaagaagatgagtctgaagttgaatatgaggttcatgttgtagaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43344752 |
tccacctaattctaatcattccaatgatcatcatgatcatggtcatcttgaagatgaagaagatgagtctgaagttgaatatgaggttcatgttgtagaa |
43344653 |
T |
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| Q |
417 |
aagaaagttgttaatgatgatg |
438 |
Q |
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|||||||||||||||||||||| |
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| T |
43344652 |
aagaaagttgttaatgatgatg |
43344631 |
T |
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