View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18989_high_7 (Length: 413)
Name: NF18989_high_7
Description: NF18989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18989_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 5 - 399
Target Start/End: Complemental strand, 52380243 - 52379851
Alignment:
| Q |
5 |
ctattacttttccgacctatccttttctcacgtatcctatcaaattccaaaaatgcctttgaaattttcagactataaaaatccttaagagtttttcccc |
104 |
Q |
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| T |
52380243 |
ctattacttttcccacctatgcttttctcacgcatcctatcaaattccaaaaatgcctttgaaattttcagactataaaa-tcct-aagagtttttcccc |
52380146 |
T |
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| Q |
105 |
gatttttggatggaaagatgcatttttcatcaattcaaattataaaacctgaaaacattagtgctttggattttataattagattaccccttatacacca |
204 |
Q |
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| T |
52380145 |
aatttttggacggaaagatgcatttttcatcaattcaaattataaaacctgaaaacattagtgctttgaattttataattagattaccccttatacacca |
52380046 |
T |
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| Q |
205 |
tacttcgaagcatgtatagaagacgttcggattataaaattcgaaaatgtttgttgtttcgaattatacaccctattgtgccaaaaatctatgaattata |
304 |
Q |
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| T |
52380045 |
tacttcgaagcatgtatagaagacgttcggattataaaattcgaaaatgtttgttgtttcgaattatacaccctgttgtgccaaaaatctatgaattata |
52379946 |
T |
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| Q |
305 |
tcagcacaaagacaaagtatgtttatgagagggataactaatttaagaatcatactaaccatcataacctctagtgtttcaggtcattgttagtt |
399 |
Q |
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| T |
52379945 |
tcagcacaaagacaaagtatgtttatgagagggataactaatttaagaatcatactaaccatcataacccccagtgtttcaggtcattgttagtt |
52379851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 16525746 - 16525646
Alignment:
| Q |
123 |
tgcatttttcatcaattcaaattataaaacctgaaaacattagtgctttggattttataattagattaccccttatacaccatacttcgaagcatgtata |
222 |
Q |
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| T |
16525746 |
tgcatttttcaccaattcagattgtaaaatccaaaaacataagtgctttagattttataatccaaacactccatatacaccatacttcaaagcatgtata |
16525647 |
T |
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| Q |
223 |
g |
223 |
Q |
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| T |
16525646 |
g |
16525646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 27623268 - 27623337
Alignment:
| Q |
298 |
aattatatcagcacaaagacaaagtatgtttatgagagggataactaatttaagaatcatactaaccatc |
367 |
Q |
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| T |
27623268 |
aattgtatgagcacaaagactgaatttgtttgtgatagggataaccaatttaagaaccatactaaccatc |
27623337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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