View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18989_high_8 (Length: 395)
Name: NF18989_high_8
Description: NF18989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18989_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 45681498 - 45681824
Alignment:
| Q |
19 |
ctatggatattcaccgcaaaaatattcaattgggtaagtatttaattatttgtgacnnnnnnnnn---gaatttgatcagctacataattgaagcaatan |
115 |
Q |
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| T |
45681498 |
ctatggatattcaccgcaaaaatattcaattgggtaagtatttaattatttgtgacaaaaaaaaaaaagaatttgatcagctacataattgaagcaat-t |
45681596 |
T |
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| Q |
116 |
nnnnnnnnccttcccagaaaacaaaattgatgtctatgtttccaggacaaatgaattatcagaattgttttaagttttgacaataaataaatatgcttgc |
215 |
Q |
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| T |
45681597 |
ttttttttccttcccagaaaacaaaattgatgtctatgtttccaggacagatgaattatcagaattgttttaagttttgacaataaataaatatgcttgc |
45681696 |
T |
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| Q |
216 |
ttatgattaacgtttagtctgtatataaatatagagataaagattcgcagccataggatagagggtaaggtgccaccttaattcttgtttgaaaaaatgt |
315 |
Q |
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| T |
45681697 |
ttatgattaacgtttagtctgtatataaatatagagataaagattcgcagcc-----atagagggtaaggtgccaccttaattcttgtttgaaaaaatgt |
45681791 |
T |
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| Q |
316 |
tgtacaagaaacatgcatgtatgggaaggactg |
348 |
Q |
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| T |
45681792 |
tgtacaagaaacatgcatgtatgggaaggactg |
45681824 |
T |
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