View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18989_low_10 (Length: 376)
Name: NF18989_low_10
Description: NF18989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18989_low_10 |
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| [»] scaffold0187 (2 HSPs) |
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Alignment Details
Target: scaffold0187 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 45 - 376
Target Start/End: Original strand, 12863 - 13196
Alignment:
| Q |
45 |
aattagtatatattttgtggttaatactgcattagcaggtatggttctgttgtaatatattgcgattttttgtgattaataatgtttgtagtttcctccg |
144 |
Q |
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| T |
12863 |
aattagtatatattttgtggttaatactgcattagcaggtatggttctgttgtaatacattgcgatttattgtgattaataatgtttgtagtttcctccg |
12962 |
T |
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| Q |
145 |
ttaacattgagataggcccttgagatttttaattagtaaatattgatcgcctaggctaggtggcaatttcagattggagattttatgcaattaatccctc |
244 |
Q |
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| T |
12963 |
ttaacattgagataggcccttgagatttttaattagtaaatattgatcgcctaggctaggtggcaatttcagattggagattttatgc----aatccccc |
13058 |
T |
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| Q |
245 |
tactttttctgttcttacagtgttccttctattgagcatgaattcattatcgg----agtagtgttgcatgctaatgctttatttctcaatcttttaaga |
340 |
Q |
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| T |
13059 |
tactttttctgttcttacagtgttccttctattgagcatgaattcattatcggagtaagtagtgttgcatgctaatgctttatttctcaatcttttaaga |
13158 |
T |
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| Q |
341 |
tttaaaaaatg--tttgatttatattcttcgacatccg |
376 |
Q |
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| T |
13159 |
tttaaaaaatgtttttgatttatgtttttcaacatccg |
13196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 45 - 376
Target Start/End: Original strand, 23191 - 23524
Alignment:
| Q |
45 |
aattagtatatattttgtggttaatactgcattagcaggtatggttctgttgtaatatattgcgattttttgtgattaataatgtttgtagtttcctccg |
144 |
Q |
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| T |
23191 |
aattagtatatattttgtggttaatactgcattagcaggtatggttctgttgtaatacattgcgatttattgtgattaataatgtttgtagtttcctccg |
23290 |
T |
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| Q |
145 |
ttaacattgagataggcccttgagatttttaattagtaaatattgatcgcctaggctaggtggcaatttcagattggagattttatgcaattaatccctc |
244 |
Q |
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| T |
23291 |
ttaacattgagataggcccttgagatttttaattagtaaatattgatcgcctaggctaggtggcaatttcagattggagattttatgc----aatccccc |
23386 |
T |
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| Q |
245 |
tactttttctgttcttacagtgttccttctattgagcatgaattcattatcgg----agtagtgttgcatgctaatgctttatttctcaatcttttaaga |
340 |
Q |
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| T |
23387 |
tactttttctgttcttacagtgttccttctattgagcatgaattcattatcggagtaagtagtgttgcatgctaatgctttatttctcaatcttttaaga |
23486 |
T |
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| Q |
341 |
tttaaaaaatg--tttgatttatattcttcgacatccg |
376 |
Q |
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| T |
23487 |
tttaaaaaatgtttttgatttatgtttttcaacatccg |
23524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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