View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18989_low_11 (Length: 372)
Name: NF18989_low_11
Description: NF18989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18989_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 108 - 354
Target Start/End: Original strand, 7960627 - 7960869
Alignment:
| Q |
108 |
agtttaaaactaatttacagagacaaatgcaatgcatgtctaaatctaatttgtaagaattgtacttgttaaacagtttcggagctgggtccagaggatt |
207 |
Q |
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| T |
7960627 |
agtttaaaactaatttacacagacaaa----atgcatgtctaaatctaatttgtaagaattgtacttgttaaacagtttcggagctgggtccagaggatt |
7960722 |
T |
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| Q |
208 |
caggtaggaacatagtagagataatcttcaaatctagctggttaaagagagagactccaatgtgcaagattgaacggatactaaaagtccacaacacaca |
307 |
Q |
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| T |
7960723 |
caggtaggaacatagtagagataatcttcaaatctagctggttaaagagagagactccaatgtgcaagattgaacggatactaaaagtccacaacacaca |
7960822 |
T |
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| Q |
308 |
acgaacaatccaacggttcgaggaatgcagagacgcagtaaaatccc |
354 |
Q |
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| T |
7960823 |
acgaacaatccaacggttcgaggaatgcagagacgcagtaaaatccc |
7960869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 7960446 - 7960489
Alignment:
| Q |
41 |
tatataaataaaatgcaacaatttaatcttcttttgacatttaa |
84 |
Q |
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| T |
7960446 |
tatataaataaaatgaaacaatttaatcttcttttgacatttaa |
7960489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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