View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18989_low_13 (Length: 335)
Name: NF18989_low_13
Description: NF18989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18989_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 8e-92; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 36147143 - 36146973
Alignment:
| Q |
1 |
ctaatgatgtgatttttatgccaataataatgtgattttatgtacatatatattataatcataatatattacggatagtaaaacttaagacttgcataca |
100 |
Q |
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| T |
36147143 |
ctaatgatgtgatttttatgccaataataatgtgattttatgtacatatatattataatcataatatattacggatagtaaaacttaagacttgcataca |
36147044 |
T |
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| Q |
101 |
catataatagtagtatataataatatgacattttctcctgatattttcattatgtatgcagaaatgtagaa |
171 |
Q |
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| T |
36147043 |
catataatagtagtatataataatatgacattttctcctgatattttcattatgtatgcagaaatgtagaa |
36146973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 36146883 - 36146809
Alignment:
| Q |
261 |
catttggacaggtttttaaaaagctacttgaacctataattgatcccaacactattcaaaggcatccagtcacag |
335 |
Q |
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| T |
36146883 |
catttggacaggtttttaaaaagctacttgaacctataattgatcccaacactattcaaaggcatccagtcacag |
36146809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 36075501 - 36075442
Alignment:
| Q |
268 |
acaggtttttaaaaagctacttgaacctataattgatcccaacactattcaaaggcatcc |
327 |
Q |
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| T |
36075501 |
acagttttttaaaaagctactcgtacctgtaattgatccccacactattcaaaggcatcc |
36075442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 36079916 - 36079865
Alignment:
| Q |
48 |
atatattataatcataatatattacggatagtaaaacttaagacttgcatac |
99 |
Q |
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| T |
36079916 |
atatattataatcataatatatgacaaatagtaaaacttaagacttgcatac |
36079865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 36075708 - 36075673
Alignment:
| Q |
118 |
taataatatgacattttctcctgatattttcattat |
153 |
Q |
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| T |
36075708 |
taataatatgacattttctcctgatattttcattat |
36075673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 26530139 - 26530205
Alignment:
| Q |
261 |
catttggacaggtttttaaaaagctacttgaacctataattgatcccaacactattcaaaggcatcc |
327 |
Q |
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| T |
26530139 |
catttggataggtttttaaaaagttactcgaacccataattgatcccaacactattcaaaggcatcc |
26530205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 26529972 - 26530015
Alignment:
| Q |
122 |
aatatgacattttctcctgatattttcattatgtatgcagaaat |
165 |
Q |
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| T |
26529972 |
aatatgacattttctcctgatattttcattatgtatgcagaaat |
26530015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 26529831 - 26529875
Alignment:
| Q |
23 |
aataataatgtgattttatgtacatatatattataatcataatatat |
69 |
Q |
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| T |
26529831 |
aataataatgtgattttatgtac--atatattttaatcataatatat |
26529875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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