View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18989_low_14 (Length: 334)
Name: NF18989_low_14
Description: NF18989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18989_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 44 - 248
Target Start/End: Original strand, 25107985 - 25108185
Alignment:
| Q |
44 |
gaggatccaattccatgatatcatacacaaaagtttatgctttattaattgatatactttgaatgaccggattatagaatccatgtcttactttctttga |
143 |
Q |
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| T |
25107985 |
gaggatccaattccatgatatcatacacaaaagtttatgctttattaattaatatactttgaatgaccggattatagaatccatgtcttactttctttga |
25108084 |
T |
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| Q |
144 |
atgaacatgcatatgcatatgtttcaatataattaaatactggttcaagattctaatctaagaatacaaccatacatgcatgcaagttgctattgctcct |
243 |
Q |
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| T |
25108085 |
acgaa----catatgcatatgcttcaatataattaaatactggtttaagattctaatctaagaatacaaccatacatgcatgcaagttgctattgctcct |
25108180 |
T |
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| Q |
244 |
gtacc |
248 |
Q |
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||||| |
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| T |
25108181 |
gtacc |
25108185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 301
Target Start/End: Original strand, 25108200 - 25108237
Alignment:
| Q |
264 |
gggaataaacaagtctaatcaccttgtcacattttctc |
301 |
Q |
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| T |
25108200 |
gggaataaacaagtctagtcaccttgtcacattttctc |
25108237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 13234409 - 13234474
Alignment:
| Q |
152 |
gcatatgcatatgtttcaatataattaaatactggttcaagattctaatctaagaatacaaccata |
217 |
Q |
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| T |
13234409 |
gcatatgtatatgattcaatataactaaatatcgatttaatattccaatctaagaatacaaccata |
13234474 |
T |
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