View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18989_low_15 (Length: 324)
Name: NF18989_low_15
Description: NF18989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18989_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 4 - 308
Target Start/End: Complemental strand, 18645345 - 18645027
Alignment:
| Q |
4 |
agagacctctaaaacatttacaatatggtcgcagttttgtaccatagtttataaatgtaactggctaagttttaaa-----------------tgcatct |
86 |
Q |
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| T |
18645345 |
agagacctctaaaacatttacaatatggttgcagttttgtagcatagtttctaaatgtaactgactaagtttaaaaaacctcataaaatagcatgcatct |
18645246 |
T |
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| Q |
87 |
gaacttgataaccacggacacatgttgatgaataatttgtcaagattttcgtatgctagtattgaaaaattgtcgattttatgatgactagaatcactaa |
186 |
Q |
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| T |
18645245 |
gaacttgataatcacaaacacatgttga---ataatttgtcaagattttcgtatgctagtattgaaaaattgtcgattttatgatgactagaatcactaa |
18645149 |
T |
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| Q |
187 |
tatgtgagcactatgattctcaggatgaattgaagcaactagcaaaaagtgagaggctagcagttaatgtgtcaaatgcagttaacttggtactatttgc |
286 |
Q |
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| T |
18645148 |
tatgtgagcactatgattctcaggatgaattgaagcaactagcaaaacgtgagaggctagcagttaatgtgtcaaatgcagtcaacttggtgctatttgc |
18645049 |
T |
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| Q |
287 |
agcaaaggtatatgcatcaatt |
308 |
Q |
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| T |
18645048 |
agcgaaggtatatgcatcaatt |
18645027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 123 - 308
Target Start/End: Complemental strand, 18649011 - 18648826
Alignment:
| Q |
123 |
ttgtcaagattttcgtatgctagtattgaaaaattgtcgattttatgatgactagaatcactaatatgtgagcactatgattctcaggatgaattgaagc |
222 |
Q |
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| T |
18649011 |
ttgtcaagattttcgtatgctagtattgaaaaattgtcgattttatgatgactagaatcactaacatgtgagcactatgattctcaggatgaattgaagc |
18648912 |
T |
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| Q |
223 |
aactagcaaaaagtgagaggctagcagttaatgtgtcaaatgcagttaacttggtactatttgcagcaaaggtatatgcatcaatt |
308 |
Q |
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| T |
18648911 |
aactagcaaaaagtgagaggctagcagttaatgtgtcaaatgcagttaacttggtactatttgcagcaaaggtatatgcatcaatt |
18648826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 295
Target Start/End: Complemental strand, 27309451 - 27309363
Alignment:
| Q |
207 |
caggatgaattgaagcaactagcaaaaagtgagaggctagcagttaatgtgtcaaatgcagttaacttggtactatttgcagcaaaggt |
295 |
Q |
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| T |
27309451 |
caggatgaaatgaagcaacttgcaaagagcgagaggacggcagtacttgtgtcaaatgcatgcaacttggtgctgtttgcagcaaaggt |
27309363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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